Wall clock time and date at job start Tue Mar 31 2020 14:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47054 * 2 1 4 4 O 1.42898 * 109.47365 * 120.00217 * 2 1 3 5 5 C 1.35685 * 117.00105 * 150.00011 * 4 2 1 6 6 C 1.38851 * 119.61694 * 179.97438 * 5 4 2 7 7 C 1.39669 * 118.93763 * 179.97438 * 6 5 4 8 8 C 1.48002 * 120.90317 * 179.97438 * 7 6 5 9 9 O 1.21558 * 120.00108 * 133.39845 * 8 7 6 10 10 N 1.34777 * 119.99734 * 313.40253 * 8 7 6 11 11 C 1.36803 * 119.99950 * 184.52079 * 10 8 7 12 12 H 1.07999 * 120.00233 * 223.13531 * 11 10 8 13 13 C 1.39100 * 119.99769 * 43.12654 * 11 10 8 14 14 N 1.31326 * 120.00080 * 14.24084 * 13 11 10 15 15 Si 1.86800 * 119.99818 * 194.23096 * 13 11 10 16 16 H 1.48503 * 109.46981 * 60.00932 * 15 13 11 17 17 H 1.48501 * 109.46929 * 180.02562 * 15 13 11 18 18 H 1.48493 * 109.47417 * 300.00318 * 15 13 11 19 19 C 1.46498 * 120.00254 * 4.52247 * 10 8 7 20 20 C 1.54268 * 110.03332 * 232.32634 * 19 10 8 21 21 C 1.54959 * 104.16123 * 217.13637 * 20 19 10 22 22 C 1.54892 * 102.78135 * 37.88790 * 21 20 19 23 23 C 1.53876 * 110.03445 * 115.11157 * 19 10 8 24 24 C 1.40057 * 118.20066 * 0.02562 * 7 6 5 25 25 C 1.37937 * 119.12527 * 359.97438 * 24 7 6 26 26 N 1.31936 * 120.98099 * 359.75099 * 25 24 7 27 27 H 1.08999 * 109.47249 * 299.99680 * 1 2 3 28 28 H 1.08996 * 109.47525 * 59.99852 * 1 2 3 29 29 H 1.09002 * 109.47594 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47249 * 240.00319 * 2 1 3 31 31 H 1.09003 * 109.47650 * 300.00104 * 3 2 1 32 32 H 1.08997 * 109.47568 * 60.00085 * 3 2 1 33 33 H 1.09007 * 109.47275 * 180.02562 * 3 2 1 34 34 H 1.07998 * 120.53515 * 0.02562 * 6 5 4 35 35 H 0.96995 * 120.00117 * 184.96833 * 14 13 11 36 36 H 1.09001 * 110.01970 * 353.72228 * 19 10 8 37 37 H 1.08999 * 110.48283 * 335.78638 * 20 19 10 38 38 H 1.08996 * 110.48203 * 98.42500 * 20 19 10 39 39 H 1.08998 * 110.72392 * 279.57788 * 21 20 19 40 40 H 1.09000 * 110.92738 * 156.29877 * 21 20 19 41 41 H 1.08994 * 110.49074 * 203.40571 * 22 21 20 42 42 H 1.09004 * 110.59427 * 80.81384 * 22 21 20 43 43 H 1.09001 * 110.03297 * 238.57168 * 23 19 10 44 44 H 1.09006 * 110.03196 * 359.94971 * 23 19 10 45 45 H 1.07996 * 120.44119 * 180.02562 * 24 7 6 46 46 H 1.07998 * 119.51022 * 180.02562 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 3.1988 -1.3130 1.0651 6 6 3.7132 -1.9848 2.1661 7 6 4.9415 -2.6385 2.0456 8 6 5.5304 -3.3672 3.1913 9 8 5.9804 -4.4854 3.0340 10 7 5.5676 -2.7910 4.4091 11 6 6.1939 -3.4250 5.4470 12 1 5.7337 -3.4458 6.4239 13 6 7.4234 -4.0432 5.2441 14 7 8.1143 -3.7897 4.1565 15 14 8.0918 -5.2337 6.5190 16 1 7.1444 -6.3653 6.6843 17 1 9.4089 -5.7520 6.0696 18 1 8.2538 -4.5301 7.8165 19 6 4.9373 -1.4857 4.6215 20 6 5.9425 -0.5130 5.2719 21 6 5.0819 0.3203 6.2549 22 6 4.0892 -0.7284 6.8150 23 6 3.7592 -1.6224 5.6019 24 6 5.6015 -2.5850 0.8114 25 6 5.0197 -1.8950 -0.2317 26 7 3.8548 -1.2937 -0.0823 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 3.1300 1.4425 -0.0005 34 1 3.1718 -2.0022 3.1004 35 1 8.9360 -4.2738 3.9800 36 1 4.5875 -1.0813 3.6716 37 1 6.7121 -1.0645 5.8120 38 1 6.3926 0.1316 4.5170 39 1 4.5503 1.1118 5.7267 40 1 5.6960 0.7361 7.0538 41 1 3.1878 -0.2406 7.1859 42 1 4.5570 -1.3154 7.6054 43 1 2.8378 -1.2837 5.1281 44 1 3.6558 -2.6602 5.9190 45 1 6.5531 -3.0780 0.6780 46 1 5.5230 -1.8501 -1.1861 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268308333.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:19 Heat of formation + Delta-G solvation = -47.436856 kcal Electronic energy + Delta-G solvation = -28011.476829 eV Core-core repulsion = 24287.074182 eV Total energy + Delta-G solvation = -3724.402648 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.92519 -40.58025 -39.07532 -38.27468 -35.28729 -34.26825 -34.10258 -32.89938 -31.14989 -29.47847 -28.49291 -28.10667 -27.33589 -25.19872 -24.37101 -22.75401 -21.57755 -21.34135 -21.04307 -19.59247 -18.07418 -17.82723 -17.55254 -17.07198 -16.72813 -16.68117 -16.12340 -15.88696 -15.55915 -15.47207 -14.92239 -14.80970 -14.66604 -14.23052 -14.07074 -13.96575 -13.38162 -13.23105 -13.13065 -12.98469 -12.86738 -12.82958 -12.73427 -12.52659 -12.33756 -12.11885 -11.88543 -11.86247 -11.82228 -11.71110 -11.53052 -11.38186 -10.91501 -10.74666 -10.66122 -10.09482 -9.48749 -9.14688 -8.20007 -6.00631 -0.08636 0.15693 1.38270 1.45327 1.49510 1.95574 2.20489 2.41131 2.76203 3.04598 3.23235 3.32170 3.77489 3.86017 3.92775 3.96660 3.99832 4.04761 4.09522 4.21887 4.26714 4.33943 4.55636 4.58374 4.66850 4.75408 4.76194 4.78227 4.84159 4.89212 4.91064 4.93348 4.95309 5.06592 5.16167 5.24602 5.25548 5.28340 5.32377 5.39273 5.42469 5.50465 5.54713 5.64200 6.19489 6.27657 6.76483 6.97674 7.13186 7.60352 8.24272 8.86246 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015300 B = 0.004590 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.628434 B = 6099.028353 C = 7265.775214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.071 3.929 3 C -0.163 4.163 4 O -0.308 6.308 5 C 0.320 3.680 6 C -0.180 4.180 7 C -0.034 4.034 8 C 0.495 3.505 9 O -0.581 6.581 10 N -0.438 5.438 11 C -0.339 4.339 12 H 0.085 0.915 13 C 0.016 3.984 14 N -0.866 5.866 15 Si 0.968 3.032 16 H -0.280 1.280 17 H -0.289 1.289 18 H -0.256 1.256 19 C 0.104 3.896 20 C -0.125 4.125 21 C -0.110 4.110 22 C -0.111 4.111 23 C -0.129 4.129 24 C -0.184 4.184 25 C 0.150 3.850 26 N -0.535 5.535 27 H 0.068 0.932 28 H 0.100 0.900 29 H 0.057 0.943 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.064 0.936 33 H 0.043 0.957 34 H 0.147 0.853 35 H 0.260 0.740 36 H 0.088 0.912 37 H 0.056 0.944 38 H 0.048 0.952 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.087 0.913 42 H 0.055 0.945 43 H 0.080 0.920 44 H 0.051 0.949 45 H 0.128 0.872 46 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.310 12.513 -5.485 18.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.015 3.985 3 C -0.220 4.220 4 O -0.216 6.216 5 C 0.142 3.858 6 C -0.201 4.201 7 C -0.045 4.045 8 C 0.284 3.716 9 O -0.463 6.463 10 N -0.157 5.157 11 C -0.466 4.466 12 H 0.103 0.897 13 C -0.190 4.190 14 N -0.501 5.501 15 Si 0.793 3.207 16 H -0.206 1.206 17 H -0.214 1.214 18 H -0.180 1.180 19 C 0.001 3.999 20 C -0.163 4.163 21 C -0.148 4.148 22 C -0.149 4.149 23 C -0.167 4.167 24 C -0.205 4.205 25 C -0.005 4.005 26 N -0.260 5.260 27 H 0.087 0.913 28 H 0.119 0.881 29 H 0.077 0.923 30 H 0.100 0.900 31 H 0.111 0.889 32 H 0.083 0.917 33 H 0.063 0.937 34 H 0.165 0.835 35 H 0.069 0.931 36 H 0.106 0.894 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.099 0.901 40 H 0.092 0.908 41 H 0.106 0.894 42 H 0.073 0.927 43 H 0.098 0.902 44 H 0.069 0.931 45 H 0.146 0.854 46 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -12.454 12.454 -6.062 18.626 hybrid contribution 1.454 -1.549 0.966 2.334 sum -10.999 10.905 -5.095 16.305 Atomic orbital electron populations 1.21916 0.90965 1.03116 1.04214 1.22638 0.95866 0.93012 0.86958 1.22186 1.01051 0.95075 1.03731 1.86293 1.30798 1.64484 1.40048 1.19566 0.86604 0.90435 0.89230 1.21254 0.96854 1.02203 0.99800 1.20580 0.94284 0.94052 0.95588 1.18343 0.83120 0.86119 0.84039 1.90561 1.50196 1.21411 1.84140 1.43451 1.48574 1.15805 1.07840 1.19099 1.00409 1.35609 0.91504 0.89716 1.26069 0.95365 0.99221 0.98374 1.69909 1.14387 1.37936 1.27919 0.85405 0.76919 0.79185 0.79218 1.20613 1.21429 1.17989 1.22449 0.93750 0.84358 0.99380 1.22574 0.98369 0.96789 0.98596 1.22416 0.97134 0.97159 0.98064 1.22244 0.99584 0.96530 0.96504 1.22464 0.97249 1.00273 0.96741 1.22133 1.02343 1.02980 0.93050 1.22793 0.88959 0.89701 0.99022 1.67213 1.10811 1.24032 1.23951 0.91311 0.88134 0.92346 0.89977 0.88877 0.91699 0.93745 0.83549 0.93091 0.89443 0.92502 0.93312 0.90098 0.90766 0.89403 0.92655 0.90175 0.93053 0.85400 0.78173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.56 71.98 0.69 -1.54 16 2 C 0.07 1.51 3.11 30.59 0.10 1.60 16 3 C -0.16 -2.99 9.53 71.98 0.69 -2.30 16 4 O -0.31 -8.78 9.76 -90.04 -0.88 -9.66 16 5 C 0.32 10.47 7.45 84.79 0.63 11.10 16 6 C -0.18 -6.67 7.35 22.76 0.17 -6.51 16 7 C -0.03 -1.48 5.17 -19.90 -0.10 -1.58 16 8 C 0.50 26.60 6.46 86.83 0.56 27.16 16 9 O -0.58 -36.43 14.78 -3.90 -0.06 -36.49 16 10 N -0.44 -22.17 2.43 -612.47 -1.49 -23.65 16 11 C -0.34 -18.46 7.22 84.12 0.61 -17.85 16 12 H 0.09 4.43 7.51 -2.91 -0.02 4.41 16 13 C 0.02 0.90 4.52 84.98 0.38 1.29 16 14 N -0.87 -52.27 11.47 21.69 0.25 -52.02 16 15 Si 0.97 45.25 29.58 68.60 2.03 47.28 16 16 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 17 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 18 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 19 C 0.10 4.16 2.44 45.72 0.11 4.27 16 20 C -0.12 -4.73 6.40 31.69 0.20 -4.53 16 21 C -0.11 -3.06 6.91 31.91 0.22 -2.84 16 22 C -0.11 -3.10 6.83 31.67 0.22 -2.89 16 23 C -0.13 -4.31 5.75 31.32 0.18 -4.13 16 24 C -0.18 -7.08 9.82 22.64 0.22 -6.86 16 25 C 0.15 4.49 11.17 84.61 0.94 5.43 16 26 N -0.54 -16.38 8.61 -309.17 -2.66 -19.04 16 27 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.08 1.86 6.97 -2.39 -0.02 1.84 16 31 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.04 0.98 8.14 -2.38 -0.02 0.96 16 34 H 0.15 5.25 5.75 -2.91 -0.02 5.23 16 35 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 36 H 0.09 3.39 4.17 -2.39 -0.01 3.38 16 37 H 0.06 2.56 6.82 -2.39 -0.02 2.54 16 38 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.09 1.91 8.14 -2.39 -0.02 1.90 16 42 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.08 2.27 7.64 -2.39 -0.02 2.25 16 44 H 0.05 1.95 7.34 -2.38 -0.02 1.93 16 45 H 0.13 5.22 8.06 -2.91 -0.02 5.20 16 46 H 0.20 4.16 8.06 -2.91 -0.02 4.14 16 Total: -1.00 -72.56 367.83 3.98 -68.58 By element: Atomic # 1 Polarization: 24.21 SS G_CDS: 0.97 Total: 25.18 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: 5.82 Total: -0.18 kcal Atomic # 7 Polarization: -90.82 SS G_CDS: -3.90 Total: -94.72 kcal Atomic # 8 Polarization: -45.21 SS G_CDS: -0.94 Total: -46.14 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -72.56 3.98 -68.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268308333.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.144 kcal (2) G-P(sol) polarization free energy of solvation -72.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds