Wall clock time and date at job start Tue Mar 31 2020 14:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.46651 * 2 1 4 4 O 1.42905 * 109.47281 * 119.99792 * 2 1 3 5 5 C 1.35429 * 117.00108 * 150.00490 * 4 2 1 6 6 N 1.32224 * 119.80157 * 0.02562 * 5 4 2 7 7 C 1.31901 * 121.80349 * 179.97438 * 6 5 4 8 8 C 1.38368 * 121.19746 * 0.02562 * 7 6 5 9 9 C 1.38318 * 119.46569 * 359.97359 * 8 7 6 10 10 C 1.40049 * 118.34320 * 359.75570 * 9 8 7 11 11 C 1.47423 * 120.60278 * 180.24314 * 10 9 8 12 12 O 1.21625 * 120.00211 * 205.52352 * 11 10 9 13 13 N 1.34777 * 119.99965 * 25.52410 * 11 10 9 14 14 C 1.36905 * 120.00204 * 8.96574 * 13 11 10 15 15 H 1.07999 * 120.00180 * 225.87032 * 14 13 11 16 16 C 1.39030 * 119.99550 * 45.87178 * 14 13 11 17 17 N 1.31385 * 119.99484 * 199.16494 * 16 14 13 18 18 Si 1.86797 * 120.00316 * 19.16218 * 16 14 13 19 19 H 1.48496 * 109.47270 * 95.25983 * 18 16 14 20 20 H 1.48504 * 109.47042 * 215.25981 * 18 16 14 21 21 H 1.48503 * 109.47254 * 335.25530 * 18 16 14 22 22 C 1.46496 * 120.00036 * 188.96578 * 13 11 10 23 23 C 1.54273 * 110.03508 * 237.90977 * 22 13 11 24 24 C 1.54960 * 104.15980 * 217.13839 * 23 22 13 25 25 C 1.54889 * 102.78168 * 37.88509 * 24 23 22 26 26 C 1.53876 * 110.03424 * 120.69310 * 22 13 11 27 27 H 1.08995 * 109.47567 * 299.99652 * 1 2 3 28 28 H 1.08998 * 109.47012 * 60.00444 * 1 2 3 29 29 H 1.09005 * 109.46984 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47553 * 239.99986 * 2 1 3 31 31 H 1.08998 * 109.47050 * 299.99533 * 3 2 1 32 32 H 1.09000 * 109.47630 * 60.00329 * 3 2 1 33 33 H 1.09007 * 109.46824 * 180.02562 * 3 2 1 34 34 H 1.07997 * 119.39769 * 179.97438 * 7 6 5 35 35 H 1.08003 * 120.26749 * 180.02562 * 8 7 6 36 36 H 1.08004 * 120.82949 * 180.02562 * 9 8 7 37 37 H 0.97002 * 119.99804 * 180.02562 * 17 16 14 38 38 H 1.08997 * 110.01889 * 359.29619 * 22 13 11 39 39 H 1.09005 * 110.47710 * 335.78402 * 23 22 13 40 40 H 1.08995 * 110.48354 * 98.42134 * 23 22 13 41 41 H 1.09007 * 110.71747 * 279.56789 * 24 23 22 42 42 H 1.08995 * 110.92396 * 156.29663 * 24 23 22 43 43 H 1.08994 * 110.48587 * 203.40714 * 25 24 23 44 44 H 1.09001 * 110.59937 * 80.81384 * 25 24 23 45 45 H 1.09003 * 110.02936 * 238.56915 * 26 22 13 46 46 H 1.09003 * 110.02736 * 359.97438 * 26 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.1966 -1.3117 1.0655 6 7 3.8589 -1.2893 -0.0786 7 6 5.0211 -1.8967 -0.2210 8 6 5.6014 -2.5886 0.8273 9 6 4.9524 -2.6448 2.0475 10 6 3.7224 -1.9878 2.1773 11 6 2.9905 -2.0110 3.4568 12 8 1.7824 -1.8713 3.4689 13 7 3.6602 -2.1869 4.6131 14 6 5.0290 -2.1604 4.6223 15 1 5.5801 -2.9177 5.1600 16 6 5.7094 -1.1585 3.9395 17 7 6.9742 -1.3215 3.6234 18 14 4.8254 0.4191 3.4717 19 1 5.0759 1.4529 4.5079 20 1 5.3310 0.8997 2.1606 21 1 3.3666 0.1590 3.3743 22 6 2.9234 -2.4065 5.8601 23 6 3.2982 -1.3236 6.8931 24 6 3.3168 -2.0800 8.2454 25 6 3.9245 -3.4522 7.8622 26 6 3.3211 -3.7594 6.4761 27 1 -0.3634 0.5137 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.6765 1.9563 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 3.1299 1.4426 -0.0005 34 1 5.5285 -1.8537 -1.1734 35 1 6.5539 -3.0801 0.6942 36 1 5.3855 -3.1784 2.8807 37 1 7.4490 -0.6223 3.1473 38 1 1.8507 -2.3843 5.6686 39 1 4.2830 -0.9113 6.6731 40 1 2.5473 -0.5337 6.9071 41 1 2.3055 -2.2004 8.6339 42 1 3.9487 -1.5665 8.9700 43 1 3.6306 -4.2145 8.5836 44 1 5.0107 -3.3865 7.7992 45 1 2.4411 -4.3934 6.5842 46 1 4.0619 -4.2527 5.8468 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000284150086.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:23 Heat of formation + Delta-G solvation = -23.607170 kcal Electronic energy + Delta-G solvation = -28979.243851 eV Core-core repulsion = 25255.874536 eV Total energy + Delta-G solvation = -3723.369315 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.38676 -38.94608 -37.59416 -36.65799 -34.44203 -32.84730 -32.04771 -31.35359 -29.62069 -28.09977 -27.24694 -27.03501 -24.82556 -23.59855 -22.96092 -20.71037 -20.21369 -20.10012 -19.31469 -17.93139 -17.17483 -16.24736 -15.92324 -15.56627 -15.21105 -14.75749 -14.49292 -14.14757 -13.96878 -13.92461 -13.51592 -13.34228 -13.00212 -12.76282 -12.61903 -12.40301 -12.09929 -12.08326 -11.91758 -11.67545 -11.50731 -11.17125 -11.06594 -10.87480 -10.72317 -10.59673 -10.57388 -10.50384 -10.38690 -10.09980 -10.00120 -9.79177 -9.34543 -9.15938 -8.66731 -8.33516 -7.78411 -7.59217 -6.61757 -4.21731 1.56104 2.11314 3.11766 3.24567 3.39142 3.57751 3.86876 4.12999 4.34789 4.66992 4.81303 4.85365 5.13979 5.22806 5.25105 5.27859 5.46041 5.48735 5.60689 5.71167 5.73322 5.84791 5.87863 5.94719 5.98218 6.04951 6.14821 6.15575 6.18904 6.24075 6.25211 6.33751 6.35537 6.40768 6.42326 6.43125 6.58280 6.79370 6.82380 6.93365 6.99645 7.07745 7.32744 7.56328 7.72707 7.93919 8.38944 8.44273 8.91663 9.28572 9.73271 10.44286 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.014684 B = 0.006145 C = 0.005301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.355949 B = 4555.613592 C = 5280.458554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.075 3.925 3 C -0.168 4.168 4 O -0.270 6.270 5 C 0.345 3.655 6 N -0.563 5.563 7 C 0.136 3.864 8 C -0.228 4.228 9 C 0.040 3.960 10 C -0.196 4.196 11 C 0.542 3.458 12 O -0.575 6.575 13 N -0.466 5.466 14 C -0.346 4.346 15 H 0.107 0.893 16 C 0.083 3.917 17 N -0.844 5.844 18 Si 0.834 3.166 19 H -0.279 1.279 20 H -0.282 1.282 21 H -0.235 1.235 22 C 0.135 3.865 23 C -0.130 4.130 24 C -0.120 4.120 25 C -0.117 4.117 26 C -0.127 4.127 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.086 0.914 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.149 0.851 35 H 0.133 0.867 36 H 0.182 0.818 37 H 0.277 0.723 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.053 0.947 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.054 0.946 44 H 0.067 0.933 45 H 0.054 0.946 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.689 -0.920 -2.373 4.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.019 3.981 3 C -0.226 4.226 4 O -0.176 6.176 5 C 0.166 3.834 6 N -0.287 5.287 7 C -0.020 4.020 8 C -0.248 4.248 9 C 0.015 3.985 10 C -0.202 4.202 11 C 0.332 3.668 12 O -0.458 6.458 13 N -0.188 5.188 14 C -0.473 4.473 15 H 0.124 0.876 16 C -0.127 4.127 17 N -0.478 5.478 18 Si 0.659 3.341 19 H -0.205 1.205 20 H -0.207 1.207 21 H -0.159 1.159 22 C 0.031 3.969 23 C -0.169 4.169 24 C -0.158 4.158 25 C -0.155 4.155 26 C -0.165 4.165 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.104 0.896 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.166 0.834 35 H 0.151 0.849 36 H 0.199 0.801 37 H 0.088 0.912 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.072 0.928 44 H 0.086 0.914 45 H 0.073 0.927 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.690 -0.302 -2.903 5.524 hybrid contribution 0.497 0.870 0.167 1.016 sum -4.193 0.568 -2.736 5.039 Atomic orbital electron populations 1.21835 0.93291 1.02859 1.02281 1.22267 0.94390 0.92557 0.88933 1.22222 1.02034 0.96300 1.02016 1.86549 1.31162 1.63404 1.36516 1.19781 0.85692 0.88954 0.88958 1.67196 1.11418 1.25671 1.24444 1.22364 0.89670 0.91403 0.98529 1.21898 1.02796 1.05871 0.94267 1.22658 0.88795 0.90034 0.96985 1.20015 0.98852 1.06803 0.94570 1.17749 0.86304 0.79146 0.83574 1.90651 1.14146 1.53823 1.87221 1.43631 1.06251 1.65262 1.03610 1.18819 0.79268 1.12500 1.36705 0.87565 1.25513 0.95008 0.97018 0.95118 1.69686 1.09207 1.33959 1.34968 0.87285 0.83682 0.84792 0.78367 1.20489 1.20724 1.15873 1.21610 0.96737 0.93528 0.85054 1.22680 1.02824 0.97615 0.93753 1.22415 0.99910 0.96332 0.97148 1.22264 1.00605 0.96338 0.96246 1.22410 1.00350 0.97406 0.96352 0.91745 0.91169 0.91865 0.89649 0.91507 0.92234 0.92282 0.83368 0.84945 0.80054 0.91220 0.89841 0.89664 0.92784 0.92312 0.92193 0.92770 0.91387 0.92676 0.90600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.56 37.16 0.36 -1.75 16 2 C 0.08 1.33 3.11 -26.73 -0.08 1.25 16 3 C -0.17 -2.73 9.53 37.16 0.35 -2.38 16 4 O -0.27 -6.15 8.17 -37.94 -0.31 -6.46 16 5 C 0.35 7.93 6.27 -16.59 -0.10 7.82 16 6 N -0.56 -11.53 8.64 -12.96 -0.11 -11.65 16 7 C 0.14 2.46 11.17 -17.47 -0.20 2.27 16 8 C -0.23 -4.28 10.09 -39.50 -0.40 -4.68 16 9 C 0.04 0.88 6.37 -38.87 -0.25 0.63 16 10 C -0.20 -4.66 3.08 -104.69 -0.32 -4.98 16 11 C 0.54 13.63 4.65 -12.52 -0.06 13.57 16 12 O -0.58 -15.60 15.00 -14.70 -0.22 -15.82 16 13 N -0.47 -10.85 2.03 -107.75 -0.22 -11.07 16 14 C -0.35 -8.21 5.36 -14.99 -0.08 -8.29 16 15 H 0.11 2.59 7.34 -52.49 -0.39 2.21 16 16 C 0.08 2.04 2.96 -17.45 -0.05 1.99 16 17 N -0.84 -21.01 13.35 55.50 0.74 -20.27 16 18 Si 0.83 21.08 24.55 -169.99 -4.17 16.91 16 19 H -0.28 -7.08 7.11 56.52 0.40 -6.67 16 20 H -0.28 -7.31 7.11 56.52 0.40 -6.91 16 21 H -0.24 -6.38 5.04 56.52 0.28 -6.09 16 22 C 0.13 2.75 3.29 -66.81 -0.22 2.53 16 23 C -0.13 -2.45 6.42 -25.03 -0.16 -2.61 16 24 C -0.12 -1.82 6.91 -24.70 -0.17 -1.99 16 25 C -0.12 -1.77 6.83 -25.07 -0.17 -1.94 16 26 C -0.13 -2.20 6.22 -25.61 -0.16 -2.36 16 27 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.09 1.47 6.98 -51.93 -0.36 1.11 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.06 1.07 8.14 -51.92 -0.42 0.65 16 34 H 0.15 2.07 8.06 -52.49 -0.42 1.64 16 35 H 0.13 2.15 8.06 -52.48 -0.42 1.73 16 36 H 0.18 4.11 5.32 -52.48 -0.28 3.83 16 37 H 0.28 6.75 8.31 -40.82 -0.34 6.41 16 38 H 0.08 1.80 6.97 -51.93 -0.36 1.44 16 39 H 0.08 1.79 7.03 -51.93 -0.37 1.43 16 40 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 45 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.08 1.40 6.95 -51.93 -0.36 1.04 16 LS Contribution 355.53 15.07 5.36 5.36 Total: -1.00 -29.05 355.53 -7.93 -36.99 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -7.29 Total: 6.93 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -1.71 Total: -0.92 kcal Atomic # 7 Polarization: -43.39 SS G_CDS: 0.41 Total: -42.98 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -0.53 Total: -22.29 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.17 Total: 16.91 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.05 -7.93 -36.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000284150086.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.382 kcal (2) G-P(sol) polarization free energy of solvation -29.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds