Wall clock time and date at job start Tue Mar 31 2020 14:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.46651 * 2 1 4 4 O 1.42905 * 109.47281 * 119.99792 * 2 1 3 5 5 C 1.35429 * 117.00108 * 150.00490 * 4 2 1 6 6 N 1.32224 * 119.80157 * 0.02562 * 5 4 2 7 7 C 1.31901 * 121.80349 * 179.97438 * 6 5 4 8 8 C 1.38368 * 121.19746 * 0.02562 * 7 6 5 9 9 C 1.38318 * 119.46569 * 359.97359 * 8 7 6 10 10 C 1.40049 * 118.34320 * 359.75570 * 9 8 7 11 11 C 1.47423 * 120.60278 * 180.24314 * 10 9 8 12 12 O 1.21625 * 120.00211 * 205.52352 * 11 10 9 13 13 N 1.34777 * 119.99965 * 25.52410 * 11 10 9 14 14 C 1.36905 * 120.00204 * 8.96574 * 13 11 10 15 15 H 1.07999 * 120.00180 * 225.87032 * 14 13 11 16 16 C 1.39030 * 119.99550 * 45.87178 * 14 13 11 17 17 N 1.31385 * 119.99484 * 199.16494 * 16 14 13 18 18 Si 1.86797 * 120.00316 * 19.16218 * 16 14 13 19 19 H 1.48496 * 109.47270 * 95.25983 * 18 16 14 20 20 H 1.48504 * 109.47042 * 215.25981 * 18 16 14 21 21 H 1.48503 * 109.47254 * 335.25530 * 18 16 14 22 22 C 1.46496 * 120.00036 * 188.96578 * 13 11 10 23 23 C 1.54273 * 110.03508 * 237.90977 * 22 13 11 24 24 C 1.54960 * 104.15980 * 217.13839 * 23 22 13 25 25 C 1.54889 * 102.78168 * 37.88509 * 24 23 22 26 26 C 1.53876 * 110.03424 * 120.69310 * 22 13 11 27 27 H 1.08995 * 109.47567 * 299.99652 * 1 2 3 28 28 H 1.08998 * 109.47012 * 60.00444 * 1 2 3 29 29 H 1.09005 * 109.46984 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47553 * 239.99986 * 2 1 3 31 31 H 1.08998 * 109.47050 * 299.99533 * 3 2 1 32 32 H 1.09000 * 109.47630 * 60.00329 * 3 2 1 33 33 H 1.09007 * 109.46824 * 180.02562 * 3 2 1 34 34 H 1.07997 * 119.39769 * 179.97438 * 7 6 5 35 35 H 1.08003 * 120.26749 * 180.02562 * 8 7 6 36 36 H 1.08004 * 120.82949 * 180.02562 * 9 8 7 37 37 H 0.97002 * 119.99804 * 180.02562 * 17 16 14 38 38 H 1.08997 * 110.01889 * 359.29619 * 22 13 11 39 39 H 1.09005 * 110.47710 * 335.78402 * 23 22 13 40 40 H 1.08995 * 110.48354 * 98.42134 * 23 22 13 41 41 H 1.09007 * 110.71747 * 279.56789 * 24 23 22 42 42 H 1.08995 * 110.92396 * 156.29663 * 24 23 22 43 43 H 1.08994 * 110.48587 * 203.40714 * 25 24 23 44 44 H 1.09001 * 110.59937 * 80.81384 * 25 24 23 45 45 H 1.09003 * 110.02936 * 238.56915 * 26 22 13 46 46 H 1.09003 * 110.02736 * 359.97438 * 26 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.1966 -1.3117 1.0655 6 7 3.8589 -1.2893 -0.0786 7 6 5.0211 -1.8967 -0.2210 8 6 5.6014 -2.5886 0.8273 9 6 4.9524 -2.6448 2.0475 10 6 3.7224 -1.9878 2.1773 11 6 2.9905 -2.0110 3.4568 12 8 1.7824 -1.8713 3.4689 13 7 3.6602 -2.1869 4.6131 14 6 5.0290 -2.1604 4.6223 15 1 5.5801 -2.9177 5.1600 16 6 5.7094 -1.1585 3.9395 17 7 6.9742 -1.3215 3.6234 18 14 4.8254 0.4191 3.4717 19 1 5.0759 1.4529 4.5079 20 1 5.3310 0.8997 2.1606 21 1 3.3666 0.1590 3.3743 22 6 2.9234 -2.4065 5.8601 23 6 3.2982 -1.3236 6.8931 24 6 3.3168 -2.0800 8.2454 25 6 3.9245 -3.4522 7.8622 26 6 3.3211 -3.7594 6.4761 27 1 -0.3634 0.5137 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.6765 1.9563 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 3.1299 1.4426 -0.0005 34 1 5.5285 -1.8537 -1.1734 35 1 6.5539 -3.0801 0.6942 36 1 5.3855 -3.1784 2.8807 37 1 7.4490 -0.6223 3.1473 38 1 1.8507 -2.3843 5.6686 39 1 4.2830 -0.9113 6.6731 40 1 2.5473 -0.5337 6.9071 41 1 2.3055 -2.2004 8.6339 42 1 3.9487 -1.5665 8.9700 43 1 3.6306 -4.2145 8.5836 44 1 5.0107 -3.3865 7.7992 45 1 2.4411 -4.3934 6.5842 46 1 4.0619 -4.2527 5.8468 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000284150086.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:22 Heat of formation + Delta-G solvation = -40.689385 kcal Electronic energy + Delta-G solvation = -28979.984592 eV Core-core repulsion = 25255.874536 eV Total energy + Delta-G solvation = -3724.110055 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.05706 -40.62831 -39.13473 -38.29910 -36.27499 -34.24133 -33.84439 -33.06833 -31.19563 -29.50780 -28.78914 -28.27727 -26.69953 -25.20633 -24.53674 -22.20270 -21.87062 -21.42136 -21.04970 -19.53116 -18.88665 -17.88467 -17.77936 -17.22242 -16.79324 -16.22286 -16.15019 -15.71669 -15.63190 -15.44342 -15.24983 -14.93601 -14.66291 -14.43722 -14.11161 -13.97335 -13.70951 -13.36237 -13.27474 -13.23686 -12.97109 -12.87498 -12.73722 -12.64213 -12.53762 -12.04608 -11.97285 -11.87408 -11.85498 -11.75472 -11.45463 -11.36355 -11.15411 -10.85585 -10.45352 -10.14088 -9.50000 -9.35197 -8.60053 -6.14872 -0.06362 0.47973 1.05123 1.15122 1.35544 2.00836 2.05451 2.18183 2.61997 2.84181 3.03972 3.37672 3.80663 3.83524 3.87800 3.95084 4.11123 4.12623 4.16975 4.21136 4.23190 4.43733 4.56745 4.58984 4.64290 4.70335 4.74306 4.76265 4.76729 4.77544 4.84359 4.92036 5.03447 5.06688 5.14485 5.15959 5.24843 5.28366 5.37339 5.43380 5.47964 5.59054 5.64812 5.70341 5.90239 6.39034 6.45199 6.85414 6.98502 7.37995 7.84931 8.48767 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.014684 B = 0.006145 C = 0.005301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.355949 B = 4555.613592 C = 5280.458554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.062 3.938 3 C -0.162 4.162 4 O -0.302 6.302 5 C 0.332 3.668 6 N -0.564 5.564 7 C 0.146 3.854 8 C -0.224 4.224 9 C 0.033 3.967 10 C -0.231 4.231 11 C 0.532 3.468 12 O -0.609 6.609 13 N -0.468 5.468 14 C -0.327 4.327 15 H 0.104 0.896 16 C 0.079 3.921 17 N -0.851 5.851 18 Si 0.861 3.139 19 H -0.286 1.286 20 H -0.292 1.292 21 H -0.266 1.266 22 C 0.123 3.877 23 C -0.131 4.131 24 C -0.109 4.109 25 C -0.109 4.109 26 C -0.121 4.121 27 H 0.053 0.947 28 H 0.110 0.890 29 H 0.056 0.944 30 H 0.090 0.910 31 H 0.107 0.893 32 H 0.048 0.952 33 H 0.034 0.966 34 H 0.200 0.800 35 H 0.164 0.836 36 H 0.169 0.831 37 H 0.279 0.721 38 H 0.066 0.934 39 H 0.060 0.940 40 H 0.048 0.952 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.086 0.914 44 H 0.060 0.940 45 H 0.071 0.929 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.125 -1.437 -2.864 4.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.007 3.993 3 C -0.219 4.219 4 O -0.208 6.208 5 C 0.154 3.846 6 N -0.289 5.289 7 C -0.010 4.010 8 C -0.244 4.244 9 C 0.008 3.992 10 C -0.237 4.237 11 C 0.323 3.677 12 O -0.495 6.495 13 N -0.189 5.189 14 C -0.454 4.454 15 H 0.121 0.879 16 C -0.128 4.128 17 N -0.486 5.486 18 Si 0.690 3.310 19 H -0.213 1.213 20 H -0.218 1.218 21 H -0.191 1.191 22 C 0.019 3.981 23 C -0.170 4.170 24 C -0.147 4.147 25 C -0.147 4.147 26 C -0.159 4.159 27 H 0.072 0.928 28 H 0.128 0.872 29 H 0.075 0.925 30 H 0.108 0.892 31 H 0.125 0.875 32 H 0.067 0.933 33 H 0.053 0.947 34 H 0.216 0.784 35 H 0.181 0.819 36 H 0.186 0.814 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.067 0.933 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.105 0.895 44 H 0.079 0.921 45 H 0.090 0.910 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.111 -0.818 -3.372 5.380 hybrid contribution 0.277 1.032 0.218 1.090 sum -3.834 0.213 -3.154 4.970 Atomic orbital electron populations 1.21853 0.91009 1.02960 1.03711 1.22694 0.96220 0.92803 0.87624 1.22198 1.00399 0.95849 1.03475 1.86514 1.31347 1.63812 1.39171 1.19941 0.86104 0.89182 0.89419 1.67326 1.12254 1.26004 1.23330 1.23219 0.88563 0.89038 1.00195 1.22235 1.03551 1.05466 0.93161 1.22541 0.88490 0.90115 0.98054 1.20072 1.00118 1.09069 0.94439 1.18157 0.86172 0.78754 0.84626 1.90596 1.15502 1.55523 1.87843 1.43769 1.06238 1.64578 1.04291 1.18680 0.79384 1.11696 1.35644 0.87853 1.25482 0.94982 0.96832 0.95539 1.69669 1.09008 1.34092 1.35830 0.86955 0.81649 0.85111 0.77308 1.21327 1.21798 1.19106 1.21885 0.95576 0.96140 0.84476 1.22653 1.01046 0.97444 0.95840 1.22399 1.01596 0.95631 0.95044 1.22238 0.99963 0.97203 0.95283 1.22361 1.00798 0.95454 0.97320 0.92763 0.87152 0.92452 0.89223 0.87477 0.93268 0.94669 0.78377 0.81855 0.81422 0.90998 0.91615 0.92109 0.93271 0.90287 0.90443 0.89545 0.92149 0.90992 0.92061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.90 9.56 71.98 0.69 -3.21 16 2 C 0.06 2.20 3.11 30.59 0.10 2.29 16 3 C -0.16 -5.18 9.53 71.98 0.69 -4.50 16 4 O -0.30 -14.18 8.17 -68.16 -0.56 -14.74 16 5 C 0.33 15.51 6.27 85.15 0.53 16.04 16 6 N -0.56 -22.60 8.64 -307.94 -2.66 -25.26 16 7 C 0.15 4.89 11.17 84.71 0.95 5.84 16 8 C -0.22 -7.99 10.09 22.32 0.23 -7.77 16 9 C 0.03 1.45 6.37 22.73 0.14 1.60 16 10 C -0.23 -11.24 3.08 -19.91 -0.06 -11.30 16 11 C 0.53 27.86 4.65 86.66 0.40 28.27 16 12 O -0.61 -34.78 15.00 14.97 0.22 -34.55 16 13 N -0.47 -22.49 2.03 -613.05 -1.24 -23.73 16 14 C -0.33 -15.75 5.36 84.09 0.45 -15.30 16 15 H 0.10 5.08 7.34 -2.91 -0.02 5.06 16 16 C 0.08 3.97 2.96 84.95 0.25 4.22 16 17 N -0.85 -41.93 13.35 21.68 0.29 -41.64 16 18 Si 0.86 44.65 24.55 68.60 1.68 46.33 16 19 H -0.29 -14.86 7.11 99.48 0.71 -14.15 16 20 H -0.29 -15.38 7.11 99.48 0.71 -14.67 16 21 H -0.27 -15.19 5.04 99.48 0.50 -14.69 16 22 C 0.12 5.11 3.29 45.72 0.15 5.26 16 23 C -0.13 -4.98 6.42 31.70 0.20 -4.77 16 24 C -0.11 -3.06 6.91 31.91 0.22 -2.84 16 25 C -0.11 -3.05 6.83 31.67 0.22 -2.83 16 26 C -0.12 -4.10 6.22 31.32 0.19 -3.91 16 27 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 30 H 0.09 3.02 6.98 -2.39 -0.02 3.01 16 31 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 32 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 34 H 0.20 4.59 8.06 -2.91 -0.02 4.56 16 35 H 0.16 4.76 8.06 -2.91 -0.02 4.73 16 36 H 0.17 7.66 5.32 -2.91 -0.02 7.65 16 37 H 0.28 13.39 8.31 -92.71 -0.77 12.62 16 38 H 0.07 2.95 6.97 -2.39 -0.02 2.93 16 39 H 0.06 2.59 7.03 -2.38 -0.02 2.58 16 40 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 42 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 44 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 46 H 0.06 2.25 6.95 -2.39 -0.02 2.24 16 Total: -1.00 -66.27 355.53 3.85 -62.42 By element: Atomic # 1 Polarization: 23.33 SS G_CDS: 0.76 Total: 24.09 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: 5.35 Total: 7.08 kcal Atomic # 7 Polarization: -87.02 SS G_CDS: -3.61 Total: -90.63 kcal Atomic # 8 Polarization: -48.96 SS G_CDS: -0.33 Total: -49.29 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.68 Total: 46.33 kcal Total: -66.27 3.85 -62.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000284150086.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.729 kcal (2) G-P(sol) polarization free energy of solvation -66.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds