Wall clock time and date at job start Tue Mar 31 2020 14:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50707 * 119.99850 * 2 1 4 4 N 1.46497 * 109.47214 * 124.99899 * 3 2 1 5 5 C 1.46494 * 120.00025 * 269.99878 * 4 3 2 6 6 C 1.50706 * 109.47387 * 270.00263 * 5 4 3 7 7 H 1.08003 * 119.99726 * 359.97438 * 6 5 4 8 8 C 1.37872 * 119.99987 * 180.02562 * 6 5 4 9 9 N 1.31524 * 119.99836 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 120.00413 * 359.97438 * 8 6 5 11 11 H 1.48498 * 109.47061 * 89.99809 * 10 8 6 12 12 H 1.48494 * 109.47207 * 210.00489 * 10 8 6 13 13 H 1.48508 * 109.46803 * 330.00136 * 10 8 6 14 14 C 1.34774 * 119.99925 * 89.99995 * 4 3 2 15 15 O 1.21595 * 120.00124 * 179.97438 * 14 4 3 16 16 N 1.34780 * 120.00214 * 0.27403 * 14 4 3 17 17 C 1.40163 * 120.00116 * 175.59401 * 16 14 4 18 18 C 1.38711 * 120.08876 * 34.28563 * 17 16 14 19 19 C 1.38208 * 119.98448 * 179.97438 * 18 17 16 20 20 C 1.38265 * 120.16383 * 0.02562 * 19 18 17 21 21 C 1.38248 * 120.17825 * 359.97438 * 20 19 18 22 22 C 1.38548 * 120.01218 * 359.74638 * 21 20 19 23 23 O 1.35982 * 120.08520 * 180.25891 * 22 21 20 24 24 C 1.42903 * 116.99991 * 4.23481 * 23 22 21 25 25 C 1.53005 * 109.47114 * 83.73352 * 24 23 22 26 26 C 1.52996 * 109.47637 * 203.73818 * 24 23 22 27 27 H 1.07988 * 120.00021 * 359.97438 * 1 2 3 28 28 H 1.08004 * 119.99651 * 180.02562 * 1 2 3 29 29 H 1.07998 * 120.00544 * 179.97438 * 2 1 3 30 30 H 1.09004 * 109.46771 * 4.99628 * 3 2 1 31 31 H 1.09002 * 109.46668 * 244.99793 * 3 2 1 32 32 H 1.09007 * 109.47324 * 30.00043 * 5 4 3 33 33 H 1.09003 * 109.47245 * 150.00207 * 5 4 3 34 34 H 0.96993 * 119.99981 * 180.02562 * 9 8 6 35 35 H 0.96997 * 119.99876 * 355.60168 * 16 14 4 36 36 H 1.07998 * 120.00773 * 359.95362 * 18 17 16 37 37 H 1.08001 * 119.91376 * 180.02562 * 19 18 17 38 38 H 1.08005 * 119.91384 * 179.97438 * 20 19 18 39 39 H 1.08002 * 119.99812 * 179.97438 * 21 20 19 40 40 H 1.09005 * 109.46853 * 323.74039 * 24 23 22 41 41 H 1.08996 * 109.46828 * 180.02562 * 25 24 23 42 42 H 1.09002 * 109.47031 * 300.00487 * 25 24 23 43 43 H 1.08997 * 109.46580 * 60.00238 * 25 24 23 44 44 H 1.08997 * 109.47207 * 59.99071 * 26 24 23 45 45 H 1.08996 * 109.47374 * 180.02562 * 26 24 23 46 46 H 1.09002 * 109.46478 * 300.00212 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.5588 1.8651 2.4248 6 6 2.8441 3.3438 2.4803 7 1 3.3039 3.8371 1.6366 8 6 2.5192 4.0667 3.6085 9 7 2.7677 5.3573 3.6567 10 14 1.7247 3.2134 5.0679 11 1 2.7807 2.7223 5.9892 12 1 0.8486 4.1736 5.7860 13 1 0.9130 2.0658 4.5886 14 6 4.2496 0.8663 0.9824 15 8 5.0219 0.8890 1.9213 16 7 4.6515 0.3810 -0.2091 17 6 5.9830 -0.0174 -0.3904 18 6 6.6863 -0.5911 0.6586 19 6 7.9990 -0.9837 0.4772 20 6 8.6144 -0.8057 -0.7481 21 6 7.9198 -0.2347 -1.7982 22 6 6.6018 0.1562 -1.6262 23 8 5.9156 0.7132 -2.6597 24 6 6.5841 0.7807 -3.9208 25 6 6.4255 -0.5527 -4.6542 26 6 5.9724 1.9020 -4.7631 27 1 -0.5399 0.9352 0.0004 28 1 -0.5400 -0.9354 0.0004 29 1 1.8501 -0.9352 0.0004 30 1 1.3585 2.1317 0.0895 31 1 2.6213 1.4026 -0.9314 32 1 1.4887 1.6968 2.5459 33 1 3.0989 1.3605 3.2259 34 1 2.5395 5.8658 4.4505 35 1 4.0193 0.3076 -0.9410 36 1 6.2083 -0.7305 1.6169 37 1 8.5454 -1.4305 1.2946 38 1 9.6405 -1.1136 -0.8853 39 1 8.4035 -0.0967 -2.7540 40 1 7.6431 0.9833 -3.7603 41 1 6.9359 -0.5013 -5.6160 42 1 6.8614 -1.3515 -4.0542 43 1 5.3667 -0.7553 -4.8147 44 1 6.0852 2.8519 -4.2406 45 1 6.4820 1.9532 -5.7252 46 1 4.9134 1.6993 -4.9235 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292633599.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:29 Heat of formation + Delta-G solvation = -5.592059 kcal Electronic energy + Delta-G solvation = -27146.687172 eV Core-core repulsion = 23424.099052 eV Total energy + Delta-G solvation = -3722.588121 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.66685 -39.46501 -37.57162 -35.82616 -34.47330 -33.26203 -33.01662 -32.11926 -30.07673 -29.20858 -27.77546 -27.47113 -25.56796 -23.69216 -22.92686 -21.63405 -20.89137 -20.07546 -19.22061 -18.53148 -17.44008 -16.91648 -16.82687 -15.82242 -15.51925 -15.33984 -14.83225 -14.66706 -14.43455 -14.29866 -14.00169 -13.82479 -13.40462 -13.10830 -13.02175 -12.84417 -12.52040 -12.42798 -12.30074 -11.95134 -11.87526 -11.66900 -11.54987 -11.44363 -11.24271 -10.98575 -10.92154 -10.68379 -10.50596 -10.19928 -9.96417 -9.53048 -9.29256 -9.27368 -8.55077 -8.40688 -7.87823 -7.47291 -6.04802 -4.03237 1.48412 1.55379 2.33667 3.07529 3.24013 3.32688 3.38570 3.40354 3.69725 4.07499 4.40827 4.43533 4.54932 4.68414 4.77997 5.00028 5.02629 5.13038 5.23450 5.27753 5.28966 5.31395 5.44278 5.47042 5.51417 5.54093 5.60099 5.74803 5.87016 5.92213 5.93150 6.02080 6.10455 6.27379 6.38736 6.60676 6.65995 6.70329 6.80068 6.83571 6.91918 7.05844 7.29459 7.51771 7.55253 7.66612 8.49440 8.51898 8.99133 9.19311 9.55543 11.08729 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013124 B = 0.003841 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.927378 B = 7288.077569 C = 7948.120833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.172 4.172 3 C 0.135 3.865 4 N -0.598 5.598 5 C 0.233 3.767 6 C -0.528 4.528 7 H 0.074 0.926 8 C 0.073 3.927 9 N -0.898 5.898 10 Si 0.875 3.125 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.265 1.265 14 C 0.703 3.297 15 O -0.570 6.570 16 N -0.686 5.686 17 C 0.152 3.848 18 C -0.088 4.088 19 C -0.137 4.137 20 C -0.108 4.108 21 C -0.195 4.195 22 C 0.097 3.903 23 O -0.310 6.310 24 C 0.077 3.923 25 C -0.178 4.178 26 C -0.149 4.149 27 H 0.100 0.900 28 H 0.095 0.905 29 H 0.105 0.895 30 H 0.093 0.907 31 H 0.073 0.927 32 H 0.032 0.968 33 H 0.038 0.962 34 H 0.264 0.736 35 H 0.404 0.596 36 H 0.150 0.850 37 H 0.124 0.876 38 H 0.120 0.880 39 H 0.128 0.872 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.062 0.938 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.074 0.926 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.161 -14.138 -17.151 22.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.192 4.192 3 C 0.011 3.989 4 N -0.331 5.331 5 C 0.112 3.888 6 C -0.566 4.566 7 H 0.093 0.907 8 C -0.129 4.129 9 N -0.537 5.537 10 Si 0.702 3.298 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.190 1.190 14 C 0.405 3.595 15 O -0.446 6.446 16 N -0.335 5.335 17 C 0.055 3.945 18 C -0.108 4.108 19 C -0.156 4.156 20 C -0.127 4.127 21 C -0.214 4.214 22 C 0.049 3.951 23 O -0.225 6.225 24 C 0.021 3.979 25 C -0.236 4.236 26 C -0.206 4.206 27 H 0.119 0.881 28 H 0.113 0.887 29 H 0.123 0.877 30 H 0.112 0.888 31 H 0.091 0.909 32 H 0.049 0.951 33 H 0.056 0.944 34 H 0.074 0.926 35 H 0.241 0.759 36 H 0.167 0.833 37 H 0.141 0.859 38 H 0.138 0.862 39 H 0.146 0.854 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.081 0.919 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.093 0.907 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.406 -13.790 -16.288 22.016 hybrid contribution -0.500 -0.287 0.292 0.647 sum 4.905 -14.077 -15.996 21.866 Atomic orbital electron populations 1.23837 0.95782 1.01866 1.00296 1.23479 0.96537 0.98999 1.00138 1.20572 0.93223 0.95606 0.89460 1.47171 1.09207 1.63174 1.13572 1.19594 0.94706 0.94971 0.79532 1.21364 1.40963 0.91214 1.03108 0.90746 1.24836 0.95325 0.94709 0.98073 1.69903 1.47924 1.06614 1.29218 0.86870 0.79865 0.79661 0.83414 1.19889 1.21116 1.19014 1.15862 0.82931 0.78302 0.82417 1.90872 1.52533 1.61981 1.39219 1.42704 1.09157 1.67157 1.14526 1.16914 0.85132 1.00373 0.92048 1.21316 0.94739 0.95650 0.99121 1.20964 0.94917 1.02414 0.97335 1.20828 0.99474 0.99601 0.92801 1.20967 0.93405 1.06276 1.00782 1.18716 0.90814 0.97718 0.87830 1.86109 1.42652 1.76367 1.17329 1.22403 0.97275 0.96232 0.82013 1.22357 1.03269 0.97242 1.00687 1.21843 1.02084 0.97803 0.98879 0.88145 0.88699 0.87726 0.88831 0.90927 0.95056 0.94425 0.92611 0.75870 0.83283 0.85851 0.86180 0.85410 0.90889 0.91227 0.91881 0.91503 0.91448 0.90704 0.91448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.20 14.32 29.01 0.42 -1.79 16 2 C -0.17 -2.36 9.85 -36.02 -0.35 -2.72 16 3 C 0.14 2.21 5.58 -5.19 -0.03 2.18 16 4 N -0.60 -12.64 2.44 -182.18 -0.44 -13.08 16 5 C 0.23 5.77 4.23 -5.19 -0.02 5.75 16 6 C -0.53 -15.38 9.94 -34.44 -0.34 -15.72 16 7 H 0.07 2.40 8.06 -52.48 -0.42 1.97 16 8 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 9 N -0.90 -28.03 13.96 55.43 0.77 -27.25 16 10 Si 0.87 21.78 27.47 -169.99 -4.67 17.11 16 11 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 14 C 0.70 15.17 8.12 -86.92 -0.71 14.47 16 15 O -0.57 -14.39 13.33 5.28 0.07 -14.32 16 16 N -0.69 -11.97 5.04 -14.10 -0.07 -12.04 16 17 C 0.15 2.56 6.33 -83.48 -0.53 2.03 16 18 C -0.09 -1.46 8.70 -39.42 -0.34 -1.81 16 19 C -0.14 -1.87 10.04 -39.58 -0.40 -2.27 16 20 C -0.11 -1.29 10.04 -39.57 -0.40 -1.69 16 21 C -0.20 -2.39 8.42 -39.46 -0.33 -2.72 16 22 C 0.10 1.40 6.56 -39.08 -0.26 1.14 16 23 O -0.31 -4.13 9.35 -19.68 -0.18 -4.31 16 24 C 0.08 0.74 2.87 -26.73 -0.08 0.66 16 25 C -0.18 -1.38 9.30 37.16 0.35 -1.04 16 26 C -0.15 -1.23 9.56 37.16 0.36 -0.88 16 27 H 0.10 1.20 7.84 -52.49 -0.41 0.79 16 28 H 0.09 0.99 8.06 -52.48 -0.42 0.57 16 29 H 0.10 1.37 8.06 -52.49 -0.42 0.95 16 30 H 0.09 1.58 7.72 -51.93 -0.40 1.18 16 31 H 0.07 1.05 6.42 -51.93 -0.33 0.71 16 32 H 0.03 0.74 7.13 -51.93 -0.37 0.37 16 33 H 0.04 0.99 6.85 -51.93 -0.36 0.64 16 34 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 35 H 0.40 6.06 6.34 -40.82 -0.26 5.80 16 36 H 0.15 2.77 6.17 -52.49 -0.32 2.45 16 37 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 38 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 39 H 0.13 1.23 5.74 -52.49 -0.30 0.93 16 40 H 0.07 0.65 5.92 -51.93 -0.31 0.34 16 41 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 0.52 7.47 -51.93 -0.39 0.13 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 378.57 15.07 5.71 5.71 Total: -1.00 -34.67 378.57 -8.43 -43.10 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -6.85 Total: 7.46 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: -2.77 Total: -2.35 kcal Atomic # 7 Polarization: -52.64 SS G_CDS: 0.26 Total: -52.38 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: -0.11 Total: -18.64 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.67 -8.43 -43.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292633599.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.507 kcal (2) G-P(sol) polarization free energy of solvation -34.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds