Wall clock time and date at job start Tue Mar 31 2020 14:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50693 * 120.00235 * 2 1 4 4 N 1.46503 * 109.47312 * 125.00276 * 3 2 1 5 5 C 1.46506 * 119.99711 * 89.99714 * 4 3 2 6 6 C 1.50702 * 109.46998 * 90.00660 * 5 4 3 7 7 H 1.08001 * 119.99742 * 359.97438 * 6 5 4 8 8 C 1.37870 * 120.00221 * 179.97438 * 6 5 4 9 9 N 1.31521 * 119.99859 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00247 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46790 * 0.02562 * 10 8 6 12 12 H 1.48495 * 109.46755 * 120.00230 * 10 8 6 13 13 H 1.48500 * 109.47299 * 240.00000 * 10 8 6 14 14 C 1.34772 * 119.99789 * 269.73010 * 4 3 2 15 15 O 1.21591 * 119.99783 * 179.97438 * 14 4 3 16 16 N 1.34772 * 119.99994 * 359.97438 * 14 4 3 17 17 C 1.40180 * 119.99702 * 174.37317 * 16 14 4 18 18 C 1.38700 * 120.08852 * 335.23624 * 17 16 14 19 19 C 1.38209 * 119.98642 * 179.97438 * 18 17 16 20 20 C 1.38266 * 120.15880 * 0.02562 * 19 18 17 21 21 C 1.38249 * 120.18045 * 359.97438 * 20 19 18 22 22 C 1.38549 * 120.00726 * 359.74654 * 21 20 19 23 23 O 1.35991 * 120.07649 * 180.25603 * 22 21 20 24 24 C 1.42900 * 117.00229 * 0.27714 * 23 22 21 25 25 C 1.52997 * 109.47259 * 179.97438 * 24 23 22 26 26 C 1.52996 * 109.47184 * 179.97438 * 25 24 23 27 27 H 1.07998 * 119.99921 * 179.97438 * 1 2 3 28 28 H 1.08001 * 119.99763 * 359.97438 * 1 2 3 29 29 H 1.08005 * 119.99676 * 180.02562 * 2 1 3 30 30 H 1.09002 * 109.46936 * 5.00176 * 3 2 1 31 31 H 1.09000 * 109.47262 * 245.00401 * 3 2 1 32 32 H 1.09003 * 109.46669 * 210.00105 * 5 4 3 33 33 H 1.08993 * 109.47218 * 330.00493 * 5 4 3 34 34 H 0.96993 * 119.99940 * 179.97438 * 9 8 6 35 35 H 0.96993 * 120.00242 * 354.36859 * 16 14 4 36 36 H 1.08005 * 120.00584 * 359.95209 * 18 17 16 37 37 H 1.07998 * 119.91817 * 179.97438 * 19 18 17 38 38 H 1.08002 * 119.90980 * 179.97438 * 20 19 18 39 39 H 1.07991 * 119.99532 * 180.02562 * 21 20 19 40 40 H 1.09010 * 109.46894 * 299.99721 * 24 23 22 41 41 H 1.08997 * 109.47109 * 59.99952 * 24 23 22 42 42 H 1.09001 * 109.47363 * 300.00133 * 25 24 23 43 43 H 1.09001 * 109.47118 * 59.99430 * 25 24 23 44 44 H 1.09004 * 109.47168 * 179.97438 * 26 25 24 45 45 H 1.08996 * 109.47259 * 299.99823 * 26 25 24 46 46 H 1.09004 * 109.46856 * 60.00596 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9939 1.3318 1.1314 5 6 4.3590 0.8254 0.9693 6 6 5.2617 1.9477 0.5258 7 1 4.8587 2.9389 0.3790 8 6 6.6020 1.7092 0.3075 9 7 7.0926 0.5021 0.4858 10 14 7.7208 3.1002 -0.2429 11 1 6.9298 4.3506 -0.3703 12 1 8.7974 3.2961 0.7610 13 1 8.3245 2.7598 -1.5562 14 6 2.5955 1.8272 2.3198 15 8 3.3675 1.8490 3.2589 16 7 1.3415 2.2984 2.4672 17 6 0.8892 2.7040 3.7305 18 6 1.4681 2.1811 4.8773 19 6 1.0209 2.5829 6.1217 20 6 -0.0036 3.5054 6.2272 21 6 -0.5855 4.0310 5.0886 22 6 -0.1389 3.6376 3.8374 23 8 -0.7067 4.1576 2.7165 24 6 -1.7557 5.1100 2.9026 25 6 -2.2661 5.5796 1.5389 26 6 -3.3896 6.5988 1.7382 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9354 -0.0004 30 1 1.3586 2.1316 0.0896 31 1 2.6213 1.4025 -0.9314 32 1 4.7142 0.4275 1.9199 33 1 4.3666 0.0349 0.2189 34 1 8.0354 0.3342 0.3319 35 1 0.7520 2.3569 1.6992 36 1 2.2680 1.4597 4.7977 37 1 1.4722 2.1746 7.0139 38 1 -0.3502 3.8162 7.2017 39 1 -1.3852 4.7516 5.1744 40 1 -2.5723 4.6473 3.4570 41 1 -1.3753 5.9648 3.4618 42 1 -1.4494 6.0423 0.9848 43 1 -2.6463 4.7249 0.9793 44 1 -3.7530 6.9337 0.7666 45 1 -4.2063 6.1357 2.2919 46 1 -3.0097 7.4535 2.2978 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292793656.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:38 Heat of formation + Delta-G solvation = -14.746350 kcal Electronic energy + Delta-G solvation = -26885.716563 eV Core-core repulsion = 23162.731482 eV Total energy + Delta-G solvation = -3722.985081 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.58857 -39.32152 -37.44211 -35.76584 -34.48245 -34.02154 -33.11823 -32.08803 -29.98318 -29.26499 -27.31235 -26.69530 -25.53829 -23.49813 -22.68043 -21.84893 -21.28204 -20.10731 -19.01498 -18.39786 -17.55069 -16.81956 -16.46185 -16.40371 -15.76592 -15.07922 -14.84860 -14.58649 -14.53637 -14.20508 -14.02380 -13.99482 -13.61278 -13.26113 -13.15193 -12.64746 -12.57374 -12.40070 -12.23663 -11.70525 -11.64453 -11.55222 -11.39493 -11.22955 -11.11309 -11.03218 -10.84471 -10.76675 -10.56180 -10.17146 -10.10926 -9.60399 -9.41679 -9.08235 -8.41881 -8.38732 -7.82128 -7.39251 -6.02746 -4.07067 1.52815 1.57494 2.37653 3.05391 3.29778 3.31485 3.39331 3.44566 3.71820 4.14519 4.42445 4.56209 4.59983 4.60443 4.92112 4.94697 4.98974 5.11957 5.12917 5.17787 5.26163 5.31576 5.33986 5.38408 5.58690 5.60232 5.63670 5.74267 5.76461 5.87752 5.99332 6.05626 6.11883 6.27745 6.41176 6.69665 6.73132 6.74009 6.85000 6.93464 7.08538 7.37154 7.50373 7.54065 7.71049 7.95624 8.24545 8.59702 8.94152 9.25784 9.58458 11.05155 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.011462 B = 0.003632 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2442.276762 B = 7708.075748 C = 8130.884732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.157 4.157 3 C 0.135 3.865 4 N -0.603 5.603 5 C 0.260 3.740 6 C -0.526 4.526 7 H 0.058 0.942 8 C 0.061 3.939 9 N -0.895 5.895 10 Si 0.898 3.102 11 H -0.274 1.274 12 H -0.283 1.283 13 H -0.284 1.284 14 C 0.701 3.299 15 O -0.567 6.567 16 N -0.684 5.684 17 C 0.161 3.839 18 C -0.100 4.100 19 C -0.131 4.131 20 C -0.116 4.116 21 C -0.189 4.189 22 C 0.085 3.915 23 O -0.319 6.319 24 C 0.062 3.938 25 C -0.125 4.125 26 C -0.149 4.149 27 H 0.096 0.904 28 H 0.093 0.907 29 H 0.113 0.887 30 H 0.064 0.936 31 H 0.096 0.904 32 H 0.046 0.954 33 H 0.035 0.965 34 H 0.262 0.738 35 H 0.404 0.596 36 H 0.157 0.843 37 H 0.124 0.876 38 H 0.120 0.880 39 H 0.125 0.875 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.063 0.937 45 H 0.056 0.944 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.764 6.200 3.836 22.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.176 4.176 3 C 0.011 3.989 4 N -0.336 5.336 5 C 0.141 3.859 6 C -0.565 4.565 7 H 0.076 0.924 8 C -0.140 4.140 9 N -0.534 5.534 10 Si 0.725 3.275 11 H -0.198 1.198 12 H -0.209 1.209 13 H -0.210 1.210 14 C 0.403 3.597 15 O -0.444 6.444 16 N -0.332 5.332 17 C 0.064 3.936 18 C -0.121 4.121 19 C -0.150 4.150 20 C -0.135 4.135 21 C -0.208 4.208 22 C 0.038 3.962 23 O -0.234 6.234 24 C -0.013 4.013 25 C -0.162 4.162 26 C -0.206 4.206 27 H 0.114 0.886 28 H 0.111 0.889 29 H 0.131 0.869 30 H 0.082 0.918 31 H 0.115 0.885 32 H 0.064 0.936 33 H 0.053 0.947 34 H 0.072 0.928 35 H 0.241 0.759 36 H 0.175 0.825 37 H 0.142 0.858 38 H 0.138 0.862 39 H 0.143 0.857 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.093 0.907 43 H 0.092 0.908 44 H 0.082 0.918 45 H 0.076 0.924 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -20.878 6.015 4.193 22.129 hybrid contribution 0.255 0.914 -0.591 1.118 sum -20.623 6.930 3.602 22.053 Atomic orbital electron populations 1.23746 0.95701 1.01548 1.02558 1.23555 0.96043 0.99942 0.98070 1.20546 0.92282 0.93758 0.92330 1.47576 1.15071 1.63370 1.07632 1.19264 0.73993 0.94296 0.98357 1.21502 0.93438 0.96046 1.45474 0.92410 1.24916 0.97863 0.95769 0.95498 1.69940 1.14037 1.20139 1.49287 0.86449 0.80641 0.82263 0.78107 1.19849 1.20885 1.20994 1.15901 0.80738 0.78773 0.84304 1.90845 1.52859 1.61571 1.39136 1.42824 1.14437 1.67124 1.08857 1.16984 0.95209 0.95492 0.85945 1.21474 1.00270 1.00383 0.89945 1.20983 0.97729 0.99055 0.97271 1.20809 0.97106 0.98055 0.97538 1.20910 1.03784 1.04685 0.91421 1.18599 0.96390 0.95227 0.86024 1.85983 1.50416 1.57196 1.29768 1.22798 0.88716 0.91060 0.98711 1.21488 0.99002 0.99782 0.95973 1.21682 0.97883 0.98694 1.02359 0.88603 0.88870 0.86863 0.91816 0.88547 0.93611 0.94701 0.92789 0.75883 0.82536 0.85831 0.86235 0.85727 0.92264 0.92213 0.90726 0.90832 0.91780 0.92448 0.92411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.36 14.32 29.01 0.42 -1.95 16 2 C -0.16 -2.26 9.85 -36.03 -0.35 -2.62 16 3 C 0.14 2.24 5.67 -5.20 -0.03 2.21 16 4 N -0.60 -12.98 2.44 -182.18 -0.44 -13.42 16 5 C 0.26 6.77 5.16 -5.19 -0.03 6.74 16 6 C -0.53 -14.95 9.38 -34.44 -0.32 -15.27 16 7 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 8 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 9 N -0.89 -26.54 13.29 55.43 0.74 -25.80 16 10 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 16 11 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 12 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 14 C 0.70 15.43 8.08 -86.93 -0.70 14.73 16 15 O -0.57 -14.56 13.09 5.29 0.07 -14.49 16 16 N -0.68 -12.31 5.17 -14.11 -0.07 -12.38 16 17 C 0.16 2.78 6.45 -83.48 -0.54 2.24 16 18 C -0.10 -1.73 8.72 -39.42 -0.34 -2.07 16 19 C -0.13 -1.85 10.04 -39.58 -0.40 -2.25 16 20 C -0.12 -1.42 10.04 -39.57 -0.40 -1.82 16 21 C -0.19 -2.35 9.04 -39.46 -0.36 -2.71 16 22 C 0.08 1.25 6.70 -39.08 -0.26 0.99 16 23 O -0.32 -4.24 9.56 -19.71 -0.19 -4.43 16 24 C 0.06 0.59 4.74 37.16 0.18 0.76 16 25 C -0.12 -0.98 6.30 -26.73 -0.17 -1.15 16 26 C -0.15 -0.88 9.91 37.16 0.37 -0.51 16 27 H 0.10 1.02 8.06 -52.49 -0.42 0.59 16 28 H 0.09 1.00 7.84 -52.49 -0.41 0.59 16 29 H 0.11 1.71 8.06 -52.48 -0.42 1.28 16 30 H 0.06 0.93 5.92 -51.93 -0.31 0.62 16 31 H 0.10 1.63 8.07 -51.93 -0.42 1.21 16 32 H 0.05 1.34 7.42 -51.93 -0.39 0.95 16 33 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 34 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.40 6.36 6.04 -40.82 -0.25 6.12 16 36 H 0.16 3.08 5.79 -52.48 -0.30 2.78 16 37 H 0.12 1.47 8.06 -52.49 -0.42 1.04 16 38 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 39 H 0.12 1.21 6.30 -52.49 -0.33 0.88 16 40 H 0.06 0.48 7.65 -51.92 -0.40 0.09 16 41 H 0.06 0.53 7.68 -51.93 -0.40 0.13 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 45 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 384.10 15.07 5.79 5.79 Total: -1.00 -33.00 384.10 -9.14 -42.14 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -6.97 Total: 6.55 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: -3.04 Total: -1.00 kcal Atomic # 7 Polarization: -51.83 SS G_CDS: 0.22 Total: -51.61 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: -0.12 Total: -18.92 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.00 -9.14 -42.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292793656.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.397 kcal (2) G-P(sol) polarization free energy of solvation -33.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds