Wall clock time and date at job start Tue Mar 31 2020 14:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50693 * 120.00235 * 2 1 4 4 N 1.46503 * 109.47312 * 125.00276 * 3 2 1 5 5 C 1.46506 * 119.99711 * 89.99714 * 4 3 2 6 6 C 1.50702 * 109.46998 * 90.00660 * 5 4 3 7 7 H 1.08001 * 119.99742 * 359.97438 * 6 5 4 8 8 C 1.37870 * 120.00221 * 179.97438 * 6 5 4 9 9 N 1.31521 * 119.99859 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00247 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46790 * 0.02562 * 10 8 6 12 12 H 1.48495 * 109.46755 * 120.00230 * 10 8 6 13 13 H 1.48500 * 109.47299 * 240.00000 * 10 8 6 14 14 C 1.34772 * 119.99789 * 269.73010 * 4 3 2 15 15 O 1.21591 * 119.99783 * 179.97438 * 14 4 3 16 16 N 1.34772 * 119.99994 * 359.97438 * 14 4 3 17 17 C 1.40180 * 119.99702 * 174.37317 * 16 14 4 18 18 C 1.38700 * 120.08852 * 335.23624 * 17 16 14 19 19 C 1.38209 * 119.98642 * 179.97438 * 18 17 16 20 20 C 1.38266 * 120.15880 * 0.02562 * 19 18 17 21 21 C 1.38249 * 120.18045 * 359.97438 * 20 19 18 22 22 C 1.38549 * 120.00726 * 359.74654 * 21 20 19 23 23 O 1.35991 * 120.07649 * 180.25603 * 22 21 20 24 24 C 1.42900 * 117.00229 * 0.27714 * 23 22 21 25 25 C 1.52997 * 109.47259 * 179.97438 * 24 23 22 26 26 C 1.52996 * 109.47184 * 179.97438 * 25 24 23 27 27 H 1.07998 * 119.99921 * 179.97438 * 1 2 3 28 28 H 1.08001 * 119.99763 * 359.97438 * 1 2 3 29 29 H 1.08005 * 119.99676 * 180.02562 * 2 1 3 30 30 H 1.09002 * 109.46936 * 5.00176 * 3 2 1 31 31 H 1.09000 * 109.47262 * 245.00401 * 3 2 1 32 32 H 1.09003 * 109.46669 * 210.00105 * 5 4 3 33 33 H 1.08993 * 109.47218 * 330.00493 * 5 4 3 34 34 H 0.96993 * 119.99940 * 179.97438 * 9 8 6 35 35 H 0.96993 * 120.00242 * 354.36859 * 16 14 4 36 36 H 1.08005 * 120.00584 * 359.95209 * 18 17 16 37 37 H 1.07998 * 119.91817 * 179.97438 * 19 18 17 38 38 H 1.08002 * 119.90980 * 179.97438 * 20 19 18 39 39 H 1.07991 * 119.99532 * 180.02562 * 21 20 19 40 40 H 1.09010 * 109.46894 * 299.99721 * 24 23 22 41 41 H 1.08997 * 109.47109 * 59.99952 * 24 23 22 42 42 H 1.09001 * 109.47363 * 300.00133 * 25 24 23 43 43 H 1.09001 * 109.47118 * 59.99430 * 25 24 23 44 44 H 1.09004 * 109.47168 * 179.97438 * 26 25 24 45 45 H 1.08996 * 109.47259 * 299.99823 * 26 25 24 46 46 H 1.09004 * 109.46856 * 60.00596 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9939 1.3318 1.1314 5 6 4.3590 0.8254 0.9693 6 6 5.2617 1.9477 0.5258 7 1 4.8587 2.9389 0.3790 8 6 6.6020 1.7092 0.3075 9 7 7.0926 0.5021 0.4858 10 14 7.7208 3.1002 -0.2429 11 1 6.9298 4.3506 -0.3703 12 1 8.7974 3.2961 0.7610 13 1 8.3245 2.7598 -1.5562 14 6 2.5955 1.8272 2.3198 15 8 3.3675 1.8490 3.2589 16 7 1.3415 2.2984 2.4672 17 6 0.8892 2.7040 3.7305 18 6 1.4681 2.1811 4.8773 19 6 1.0209 2.5829 6.1217 20 6 -0.0036 3.5054 6.2272 21 6 -0.5855 4.0310 5.0886 22 6 -0.1389 3.6376 3.8374 23 8 -0.7067 4.1576 2.7165 24 6 -1.7557 5.1100 2.9026 25 6 -2.2661 5.5796 1.5389 26 6 -3.3896 6.5988 1.7382 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9354 -0.0004 30 1 1.3586 2.1316 0.0896 31 1 2.6213 1.4025 -0.9314 32 1 4.7142 0.4275 1.9199 33 1 4.3666 0.0349 0.2189 34 1 8.0354 0.3342 0.3319 35 1 0.7520 2.3569 1.6992 36 1 2.2680 1.4597 4.7977 37 1 1.4722 2.1746 7.0139 38 1 -0.3502 3.8162 7.2017 39 1 -1.3852 4.7516 5.1744 40 1 -2.5723 4.6473 3.4570 41 1 -1.3753 5.9648 3.4618 42 1 -1.4494 6.0423 0.9848 43 1 -2.6463 4.7249 0.9793 44 1 -3.7530 6.9337 0.7666 45 1 -4.2063 6.1357 2.2919 46 1 -3.0097 7.4535 2.2978 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292793656.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:37 Heat of formation + Delta-G solvation = -33.833149 kcal Electronic energy + Delta-G solvation = -26886.544229 eV Core-core repulsion = 23162.731482 eV Total energy + Delta-G solvation = -3723.812746 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.92261 -40.64258 -38.53715 -37.29663 -35.94525 -34.99737 -34.67563 -33.75685 -31.13355 -30.55509 -29.11615 -27.41698 -27.01213 -25.26200 -23.85408 -23.02249 -22.18610 -21.38360 -20.43999 -19.67615 -18.81438 -18.59409 -18.15834 -17.23499 -17.01741 -16.73891 -16.29570 -16.00888 -15.70768 -15.49966 -15.12122 -15.07867 -14.84235 -14.67993 -14.36546 -14.27885 -13.60894 -13.45726 -13.45003 -13.07708 -12.98692 -12.80956 -12.60443 -12.50153 -12.45423 -12.27416 -12.21070 -12.14487 -11.81238 -11.72234 -11.51794 -11.44063 -10.94648 -10.64474 -10.37244 -9.63625 -9.46743 -8.67667 -8.21701 -6.36688 0.37395 0.46788 1.23454 1.35629 1.38275 1.50048 1.76933 2.15880 2.19349 2.38908 2.90957 3.04057 3.08728 3.84140 3.91148 4.00052 4.01540 4.04769 4.13749 4.24781 4.32888 4.45826 4.49569 4.54549 4.60013 4.60662 4.69517 4.82132 4.90019 4.92359 5.03035 5.14983 5.17250 5.21946 5.22449 5.35461 5.38625 5.53041 5.57333 5.65716 5.66633 5.73351 5.77938 5.91771 6.05666 6.07894 6.48371 6.71676 7.00873 7.30065 7.60141 8.84790 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.011462 B = 0.003632 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2442.276762 B = 7708.075748 C = 8130.884732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.188 4.188 3 C 0.135 3.865 4 N -0.608 5.608 5 C 0.279 3.721 6 C -0.543 4.543 7 H 0.049 0.951 8 C 0.010 3.990 9 N -0.926 5.926 10 Si 0.967 3.033 11 H -0.271 1.271 12 H -0.281 1.281 13 H -0.267 1.267 14 C 0.696 3.304 15 O -0.615 6.615 16 N -0.668 5.668 17 C 0.121 3.879 18 C -0.125 4.125 19 C -0.139 4.139 20 C -0.099 4.099 21 C -0.183 4.183 22 C 0.089 3.911 23 O -0.334 6.334 24 C 0.054 3.946 25 C -0.123 4.123 26 C -0.145 4.145 27 H 0.116 0.884 28 H 0.113 0.887 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.001 0.999 33 H 0.029 0.971 34 H 0.268 0.732 35 H 0.414 0.586 36 H 0.119 0.881 37 H 0.140 0.860 38 H 0.160 0.840 39 H 0.162 0.838 40 H 0.079 0.921 41 H 0.068 0.932 42 H 0.062 0.938 43 H 0.073 0.927 44 H 0.069 0.931 45 H 0.067 0.933 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.879 8.505 4.093 26.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.207 4.207 3 C 0.013 3.987 4 N -0.342 5.342 5 C 0.158 3.842 6 C -0.581 4.581 7 H 0.068 0.932 8 C -0.189 4.189 9 N -0.566 5.566 10 Si 0.792 3.208 11 H -0.195 1.195 12 H -0.207 1.207 13 H -0.192 1.192 14 C 0.398 3.602 15 O -0.496 6.496 16 N -0.317 5.317 17 C 0.025 3.975 18 C -0.146 4.146 19 C -0.158 4.158 20 C -0.118 4.118 21 C -0.202 4.202 22 C 0.041 3.959 23 O -0.248 6.248 24 C -0.021 4.021 25 C -0.161 4.161 26 C -0.202 4.202 27 H 0.134 0.866 28 H 0.131 0.869 29 H 0.117 0.883 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.019 0.981 33 H 0.047 0.953 34 H 0.076 0.924 35 H 0.253 0.747 36 H 0.137 0.863 37 H 0.158 0.842 38 H 0.178 0.822 39 H 0.179 0.821 40 H 0.097 0.903 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.092 0.908 44 H 0.088 0.912 45 H 0.086 0.914 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -24.075 8.333 4.428 25.858 hybrid contribution 1.044 0.223 -0.600 1.225 sum -23.031 8.557 3.828 24.865 Atomic orbital electron populations 1.24032 0.94547 1.03427 0.97851 1.23264 0.96926 0.98199 1.02334 1.20736 0.91824 0.96043 0.90109 1.47432 1.14358 1.63222 1.09147 1.18687 0.76369 0.93661 0.95475 1.21728 0.94422 0.96098 1.45882 0.93225 1.25813 0.99348 0.98399 0.95350 1.70051 1.14659 1.22072 1.49826 0.85376 0.78305 0.78947 0.78206 1.19496 1.20699 1.19182 1.16073 0.81715 0.78761 0.83690 1.90809 1.54597 1.63458 1.40695 1.42472 1.12836 1.66464 1.09915 1.17249 0.97272 0.97815 0.85166 1.21314 1.00373 1.00997 0.91904 1.21215 0.98496 0.99640 0.96411 1.21267 0.95208 0.95932 0.99407 1.21361 1.04009 1.04490 0.90296 1.18645 0.95454 0.94311 0.87445 1.85976 1.51422 1.57880 1.29553 1.23135 0.88252 0.90681 1.00014 1.21509 0.99250 1.00221 0.95117 1.21667 0.97339 0.98225 1.02985 0.86552 0.86926 0.88260 0.89454 0.89336 0.98073 0.95320 0.92352 0.74726 0.86275 0.84185 0.82203 0.82092 0.90327 0.91379 0.91905 0.90831 0.91214 0.91429 0.92047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.52 14.32 67.78 0.97 -2.55 16 2 C -0.19 -5.48 9.85 25.64 0.25 -5.22 16 3 C 0.14 4.62 5.67 85.63 0.49 5.11 16 4 N -0.61 -27.82 2.44 -848.57 -2.07 -29.89 16 5 C 0.28 15.60 5.16 85.63 0.44 16.04 16 6 C -0.54 -32.26 9.38 25.60 0.24 -32.02 16 7 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 8 C 0.01 0.59 5.46 84.65 0.46 1.05 16 9 N -0.93 -56.79 13.29 21.45 0.28 -56.50 16 10 Si 0.97 46.08 29.54 68.60 2.03 48.10 16 11 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 12 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 13 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 14 C 0.70 32.59 8.08 179.06 1.45 34.04 16 15 O -0.62 -34.20 13.09 -4.00 -0.05 -34.26 16 16 N -0.67 -24.80 5.17 -316.81 -1.64 -26.43 16 17 C 0.12 4.24 6.45 38.17 0.25 4.48 16 18 C -0.12 -4.53 8.72 22.37 0.20 -4.33 16 19 C -0.14 -3.80 10.04 22.27 0.22 -3.57 16 20 C -0.10 -2.09 10.04 22.28 0.22 -1.87 16 21 C -0.18 -3.90 9.04 22.35 0.20 -3.69 16 22 C 0.09 2.47 6.70 22.59 0.15 2.62 16 23 O -0.33 -8.16 9.56 -93.45 -0.89 -9.06 16 24 C 0.05 0.83 4.74 71.98 0.34 1.18 16 25 C -0.12 -1.63 6.30 30.59 0.19 -1.44 16 26 C -0.14 -1.26 9.91 71.98 0.71 -0.55 16 27 H 0.12 2.13 8.06 -2.91 -0.02 2.11 16 28 H 0.11 2.05 7.84 -2.91 -0.02 2.03 16 29 H 0.10 3.15 8.06 -2.91 -0.02 3.13 16 30 H 0.09 2.51 5.92 -2.39 -0.01 2.49 16 31 H 0.09 3.11 8.07 -2.39 -0.02 3.09 16 32 H 0.00 0.07 7.42 -2.39 -0.02 0.06 16 33 H 0.03 1.61 8.07 -2.39 -0.02 1.59 16 34 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 35 H 0.41 13.02 6.04 -92.71 -0.56 12.46 16 36 H 0.12 5.19 5.79 -2.91 -0.02 5.17 16 37 H 0.14 3.22 8.06 -2.91 -0.02 3.20 16 38 H 0.16 2.12 8.06 -2.91 -0.02 2.10 16 39 H 0.16 2.24 6.30 -2.91 -0.02 2.23 16 40 H 0.08 0.94 7.65 -2.38 -0.02 0.92 16 41 H 0.07 0.96 7.68 -2.39 -0.02 0.94 16 42 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 45 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 46 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 Total: -1.00 -77.01 384.10 4.86 -72.15 By element: Atomic # 1 Polarization: 26.22 SS G_CDS: 0.41 Total: 26.63 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: 6.79 Total: 9.26 kcal Atomic # 7 Polarization: -109.40 SS G_CDS: -3.42 Total: -112.82 kcal Atomic # 8 Polarization: -42.37 SS G_CDS: -0.95 Total: -43.31 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.10 kcal Total: -77.01 4.86 -72.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292793656.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.314 kcal (2) G-P(sol) polarization free energy of solvation -77.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds