Wall clock time and date at job start Tue Mar 31 2020 14:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50709 * 119.99657 * 2 1 4 4 N 1.46500 * 109.47288 * 124.99890 * 3 2 1 5 5 C 1.46496 * 119.99882 * 270.00071 * 4 3 2 6 6 C 1.50699 * 109.46897 * 269.99886 * 5 4 3 7 7 H 1.07995 * 120.00039 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00110 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00375 * 180.02562 * 8 6 5 10 10 Si 1.86797 * 119.99812 * 359.97438 * 8 6 5 11 11 H 1.48503 * 109.47124 * 90.00220 * 10 8 6 12 12 H 1.48504 * 109.47306 * 210.00011 * 10 8 6 13 13 H 1.48499 * 109.47434 * 330.00263 * 10 8 6 14 14 C 1.34777 * 119.99673 * 89.99625 * 4 3 2 15 15 O 1.21599 * 119.99412 * 180.02562 * 14 4 3 16 16 N 1.34776 * 120.00352 * 0.02562 * 14 4 3 17 17 C 1.40146 * 119.99780 * 184.59206 * 16 14 4 18 18 C 1.38834 * 120.01702 * 144.90653 * 17 16 14 19 19 C 1.38095 * 119.98968 * 180.27074 * 18 17 16 20 20 C 1.38721 * 120.01072 * 359.49535 * 19 18 17 21 21 O 1.35981 * 119.98193 * 180.25091 * 20 19 18 22 22 C 1.42894 * 116.99951 * 0.25507 * 21 20 19 23 23 C 1.53005 * 109.47215 * 179.97438 * 22 21 20 24 24 C 1.52993 * 109.47804 * 179.97438 * 23 22 21 25 25 C 1.38712 * 120.02894 * 0.50373 * 20 19 18 26 26 C 1.38097 * 120.01172 * 359.74859 * 25 20 19 27 27 H 1.07995 * 120.00434 * 0.02562 * 1 2 3 28 28 H 1.08004 * 119.99861 * 179.97438 * 1 2 3 29 29 H 1.07995 * 120.00434 * 179.97438 * 2 1 3 30 30 H 1.08998 * 109.47048 * 4.99193 * 3 2 1 31 31 H 1.09002 * 109.46914 * 244.99863 * 3 2 1 32 32 H 1.09001 * 109.47294 * 29.99961 * 5 4 3 33 33 H 1.09002 * 109.47013 * 149.99881 * 5 4 3 34 34 H 0.96997 * 120.00589 * 179.97438 * 9 8 6 35 35 H 0.97000 * 119.99727 * 4.58708 * 16 14 4 36 36 H 1.08011 * 120.00441 * 359.97438 * 18 17 16 37 37 H 1.08002 * 119.99282 * 179.72038 * 19 18 17 38 38 H 1.09000 * 109.47366 * 299.99747 * 22 21 20 39 39 H 1.09002 * 109.47761 * 60.00109 * 22 21 20 40 40 H 1.09000 * 109.46756 * 300.00132 * 23 22 21 41 41 H 1.09002 * 109.46658 * 59.99445 * 23 22 21 42 42 H 1.09000 * 109.46930 * 59.99676 * 24 23 22 43 43 H 1.08996 * 109.47697 * 179.97438 * 24 23 22 44 44 H 1.09002 * 109.46734 * 300.00238 * 24 23 22 45 45 H 1.08001 * 119.99267 * 179.72500 * 25 20 19 46 46 H 1.08003 * 120.00782 * 179.97438 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3321 1.1314 5 6 2.5587 1.8651 2.4248 6 6 2.8440 3.3438 2.4803 7 1 3.3037 3.8371 1.6367 8 6 2.5190 4.0668 3.6084 9 7 2.7675 5.3573 3.6567 10 14 1.7245 3.2135 5.0678 11 1 2.7805 2.7224 5.9892 12 1 0.8484 4.1737 5.7860 13 1 0.9129 2.0659 4.5886 14 6 4.2496 0.8664 0.9824 15 8 5.0215 0.8883 1.9216 16 7 4.6499 0.3764 -0.2077 17 6 5.9226 -0.1957 -0.3375 18 6 6.1142 -1.2783 -1.1854 19 6 7.3674 -1.8452 -1.3086 20 6 8.4370 -1.3265 -0.5935 21 8 9.6718 -1.8820 -0.7192 22 6 9.7957 -2.9930 -1.6092 23 6 11.2465 -3.4790 -1.6193 24 6 11.3793 -4.6690 -2.5716 25 6 8.2463 -0.2449 0.2538 26 6 6.9924 0.3195 0.3819 27 1 -0.5400 0.9352 -0.0004 28 1 -0.5400 -0.9354 -0.0004 29 1 1.8500 -0.9352 0.0004 30 1 1.3584 2.1317 0.0894 31 1 2.6212 1.4027 -0.9314 32 1 1.4886 1.6968 2.5459 33 1 3.0988 1.3605 3.2259 34 1 2.5386 5.8661 4.4502 35 1 4.0570 0.4197 -0.9742 36 1 5.2822 -1.6801 -1.7448 37 1 7.5156 -2.6902 -1.9648 38 1 9.1441 -3.8005 -1.2754 39 1 9.5086 -2.6867 -2.6151 40 1 11.8979 -2.6714 -1.9534 41 1 11.5340 -3.7852 -0.6134 42 1 11.0915 -4.3632 -3.5775 43 1 12.4129 -5.0150 -2.5792 44 1 10.7279 -5.4765 -2.2371 45 1 9.0784 0.1556 0.8137 46 1 6.8439 1.1614 1.0419 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296494236.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:41 Heat of formation + Delta-G solvation = -11.957068 kcal Electronic energy + Delta-G solvation = -25983.088219 eV Core-core repulsion = 22260.224091 eV Total energy + Delta-G solvation = -3722.864128 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.48845 -39.61291 -37.60111 -35.82563 -34.54950 -33.71885 -33.12490 -32.12493 -30.93069 -29.07767 -27.80595 -26.64539 -25.57675 -23.21708 -22.93205 -21.70755 -21.30660 -20.14995 -19.26135 -18.24450 -17.74710 -17.00925 -16.90001 -16.46049 -15.87054 -15.29277 -14.98753 -14.52375 -14.37113 -14.27742 -14.17029 -13.80586 -13.55180 -13.29412 -12.96028 -12.87209 -12.67246 -12.52742 -12.34783 -12.25379 -11.90068 -11.66842 -11.59147 -11.46283 -11.26374 -10.97099 -10.94722 -10.76088 -10.52933 -10.17175 -9.66148 -9.59506 -9.34776 -9.31331 -8.84209 -8.58150 -7.89655 -7.44426 -6.08087 -4.06865 1.43959 1.52626 2.28527 3.07214 3.21238 3.30809 3.36716 3.38960 3.64004 4.02664 4.35019 4.40525 4.54426 4.55185 4.85077 4.86772 4.92806 5.06648 5.07082 5.09028 5.24489 5.26541 5.28088 5.39534 5.43097 5.50998 5.57656 5.70230 5.76927 5.80707 5.87203 6.03197 6.07552 6.11384 6.35690 6.41123 6.64804 6.66322 6.71984 6.78967 6.89729 7.12591 7.25476 7.46927 7.48183 7.62582 8.43770 8.47810 8.94803 9.13826 9.52186 11.05179 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.017943 B = 0.002687 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.151816 B =10416.965340 C =11497.994222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.173 4.173 3 C 0.137 3.863 4 N -0.599 5.599 5 C 0.232 3.768 6 C -0.529 4.529 7 H 0.075 0.925 8 C 0.073 3.927 9 N -0.897 5.897 10 Si 0.875 3.125 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.266 1.266 14 C 0.702 3.298 15 O -0.568 6.568 16 N -0.694 5.694 17 C 0.143 3.857 18 C -0.116 4.116 19 C -0.191 4.191 20 C 0.103 3.897 21 O -0.319 6.319 22 C 0.059 3.941 23 C -0.124 4.124 24 C -0.150 4.150 25 C -0.131 4.131 26 C -0.079 4.079 27 H 0.100 0.900 28 H 0.095 0.905 29 H 0.105 0.895 30 H 0.094 0.906 31 H 0.070 0.930 32 H 0.032 0.968 33 H 0.038 0.962 34 H 0.264 0.736 35 H 0.401 0.599 36 H 0.124 0.876 37 H 0.126 0.874 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.057 0.943 43 H 0.063 0.937 44 H 0.057 0.943 45 H 0.131 0.869 46 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.477 -18.212 -14.969 24.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.192 4.192 3 C 0.013 3.987 4 N -0.332 5.332 5 C 0.111 3.889 6 C -0.568 4.568 7 H 0.093 0.907 8 C -0.130 4.130 9 N -0.535 5.535 10 Si 0.702 3.298 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.191 1.191 14 C 0.404 3.596 15 O -0.444 6.444 16 N -0.344 5.344 17 C 0.047 3.953 18 C -0.137 4.137 19 C -0.211 4.211 20 C 0.057 3.943 21 O -0.233 6.233 22 C -0.016 4.016 23 C -0.162 4.162 24 C -0.207 4.207 25 C -0.150 4.150 26 C -0.100 4.100 27 H 0.119 0.881 28 H 0.113 0.887 29 H 0.123 0.877 30 H 0.112 0.888 31 H 0.088 0.912 32 H 0.050 0.950 33 H 0.056 0.944 34 H 0.074 0.926 35 H 0.238 0.762 36 H 0.142 0.858 37 H 0.143 0.857 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.076 0.924 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.149 0.851 46 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 8.112 -17.920 -13.989 24.137 hybrid contribution -0.993 -0.453 0.243 1.118 sum 7.118 -18.373 -13.746 24.025 Atomic orbital electron populations 1.23850 0.95810 1.01900 1.00165 1.23470 0.96509 0.99010 1.00240 1.20555 0.93203 0.95691 0.89247 1.47200 1.09081 1.63356 1.13591 1.19603 0.94756 0.94978 0.79522 1.21343 1.41149 0.91166 1.03105 0.90719 1.24838 0.95306 0.94725 0.98102 1.69892 1.47780 1.06584 1.29265 0.86870 0.79880 0.79641 0.83410 1.19874 1.21100 1.19052 1.15881 0.82943 0.78457 0.82327 1.90888 1.52556 1.61432 1.39493 1.42867 1.15697 1.63887 1.11953 1.17474 0.84512 0.93972 0.99335 1.20604 0.97179 0.94724 1.01234 1.20885 0.92793 1.03113 1.04264 1.18922 0.83802 0.94594 0.96954 1.86050 1.27855 1.46471 1.62908 1.22803 0.98151 0.87674 0.92977 1.21482 0.94858 0.98602 1.01245 1.21689 1.02337 0.97465 0.99204 1.20369 0.97905 0.96364 1.00352 1.21350 0.89716 1.00154 0.98743 0.88129 0.88693 0.87697 0.88780 0.91176 0.95044 0.94401 0.92569 0.76220 0.85807 0.85656 0.92252 0.92250 0.90850 0.90849 0.92404 0.91810 0.92391 0.85080 0.82938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.10 14.32 29.02 0.42 -1.69 16 2 C -0.17 -2.25 9.85 -36.02 -0.35 -2.60 16 3 C 0.14 2.09 5.65 -5.19 -0.03 2.06 16 4 N -0.60 -12.16 2.44 -182.18 -0.44 -12.60 16 5 C 0.23 5.64 4.23 -5.20 -0.02 5.62 16 6 C -0.53 -15.04 9.94 -34.44 -0.34 -15.39 16 7 H 0.07 2.33 8.06 -52.49 -0.42 1.91 16 8 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 9 N -0.90 -27.54 13.96 55.43 0.77 -26.77 16 10 Si 0.88 21.57 27.47 -169.99 -4.67 16.90 16 11 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 14 C 0.70 14.50 8.12 -86.92 -0.71 13.79 16 15 O -0.57 -14.00 13.36 5.28 0.07 -13.93 16 16 N -0.69 -11.02 5.22 -14.19 -0.07 -11.10 16 17 C 0.14 2.22 6.30 -83.61 -0.53 1.69 16 18 C -0.12 -1.46 9.96 -39.41 -0.39 -1.85 16 19 C -0.19 -2.28 9.03 -39.46 -0.36 -2.64 16 20 C 0.10 1.39 6.69 -39.23 -0.26 1.12 16 21 O -0.32 -3.95 10.14 -19.68 -0.20 -4.15 16 22 C 0.06 0.51 4.74 37.16 0.18 0.69 16 23 C -0.12 -0.87 6.30 -26.73 -0.17 -1.04 16 24 C -0.15 -0.77 9.91 37.15 0.37 -0.40 16 25 C -0.13 -1.95 9.98 -39.46 -0.39 -2.35 16 26 C -0.08 -1.34 8.69 -39.41 -0.34 -1.69 16 27 H 0.10 1.15 7.84 -52.49 -0.41 0.74 16 28 H 0.09 0.95 8.06 -52.48 -0.42 0.53 16 29 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 30 H 0.09 1.50 7.72 -51.93 -0.40 1.10 16 31 H 0.07 0.88 6.30 -51.93 -0.33 0.55 16 32 H 0.03 0.73 7.13 -51.93 -0.37 0.36 16 33 H 0.04 0.99 6.85 -51.93 -0.36 0.64 16 34 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 35 H 0.40 5.05 6.52 -40.82 -0.27 4.79 16 36 H 0.12 1.22 8.06 -52.48 -0.42 0.79 16 37 H 0.13 1.15 6.29 -52.49 -0.33 0.82 16 38 H 0.06 0.47 7.65 -51.93 -0.40 0.08 16 39 H 0.06 0.46 7.67 -51.93 -0.40 0.06 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 45 H 0.13 1.80 8.06 -52.49 -0.42 1.37 16 46 H 0.15 3.00 6.22 -52.48 -0.33 2.68 16 LS Contribution 382.01 15.07 5.76 5.76 Total: -1.00 -34.11 382.01 -8.80 -42.91 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -6.98 Total: 5.63 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: -3.03 Total: -2.65 kcal Atomic # 7 Polarization: -50.73 SS G_CDS: 0.26 Total: -50.47 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: -0.13 Total: -18.08 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.11 -8.80 -42.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296494236.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.957 kcal (2) G-P(sol) polarization free energy of solvation -34.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds