Wall clock time and date at job start Tue Mar 31 2020 14:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50709 * 119.99657 * 2 1 4 4 N 1.46500 * 109.47288 * 124.99890 * 3 2 1 5 5 C 1.46496 * 119.99882 * 270.00071 * 4 3 2 6 6 C 1.50699 * 109.46897 * 269.99886 * 5 4 3 7 7 H 1.07995 * 120.00039 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00110 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00375 * 180.02562 * 8 6 5 10 10 Si 1.86797 * 119.99812 * 359.97438 * 8 6 5 11 11 H 1.48503 * 109.47124 * 90.00220 * 10 8 6 12 12 H 1.48504 * 109.47306 * 210.00011 * 10 8 6 13 13 H 1.48499 * 109.47434 * 330.00263 * 10 8 6 14 14 C 1.34777 * 119.99673 * 89.99625 * 4 3 2 15 15 O 1.21599 * 119.99412 * 180.02562 * 14 4 3 16 16 N 1.34776 * 120.00352 * 0.02562 * 14 4 3 17 17 C 1.40146 * 119.99780 * 184.59206 * 16 14 4 18 18 C 1.38834 * 120.01702 * 144.90653 * 17 16 14 19 19 C 1.38095 * 119.98968 * 180.27074 * 18 17 16 20 20 C 1.38721 * 120.01072 * 359.49535 * 19 18 17 21 21 O 1.35981 * 119.98193 * 180.25091 * 20 19 18 22 22 C 1.42894 * 116.99951 * 0.25507 * 21 20 19 23 23 C 1.53005 * 109.47215 * 179.97438 * 22 21 20 24 24 C 1.52993 * 109.47804 * 179.97438 * 23 22 21 25 25 C 1.38712 * 120.02894 * 0.50373 * 20 19 18 26 26 C 1.38097 * 120.01172 * 359.74859 * 25 20 19 27 27 H 1.07995 * 120.00434 * 0.02562 * 1 2 3 28 28 H 1.08004 * 119.99861 * 179.97438 * 1 2 3 29 29 H 1.07995 * 120.00434 * 179.97438 * 2 1 3 30 30 H 1.08998 * 109.47048 * 4.99193 * 3 2 1 31 31 H 1.09002 * 109.46914 * 244.99863 * 3 2 1 32 32 H 1.09001 * 109.47294 * 29.99961 * 5 4 3 33 33 H 1.09002 * 109.47013 * 149.99881 * 5 4 3 34 34 H 0.96997 * 120.00589 * 179.97438 * 9 8 6 35 35 H 0.97000 * 119.99727 * 4.58708 * 16 14 4 36 36 H 1.08011 * 120.00441 * 359.97438 * 18 17 16 37 37 H 1.08002 * 119.99282 * 179.72038 * 19 18 17 38 38 H 1.09000 * 109.47366 * 299.99747 * 22 21 20 39 39 H 1.09002 * 109.47761 * 60.00109 * 22 21 20 40 40 H 1.09000 * 109.46756 * 300.00132 * 23 22 21 41 41 H 1.09002 * 109.46658 * 59.99445 * 23 22 21 42 42 H 1.09000 * 109.46930 * 59.99676 * 24 23 22 43 43 H 1.08996 * 109.47697 * 179.97438 * 24 23 22 44 44 H 1.09002 * 109.46734 * 300.00238 * 24 23 22 45 45 H 1.08001 * 119.99267 * 179.72500 * 25 20 19 46 46 H 1.08003 * 120.00782 * 179.97438 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3321 1.1314 5 6 2.5587 1.8651 2.4248 6 6 2.8440 3.3438 2.4803 7 1 3.3037 3.8371 1.6367 8 6 2.5190 4.0668 3.6084 9 7 2.7675 5.3573 3.6567 10 14 1.7245 3.2135 5.0678 11 1 2.7805 2.7224 5.9892 12 1 0.8484 4.1737 5.7860 13 1 0.9129 2.0659 4.5886 14 6 4.2496 0.8664 0.9824 15 8 5.0215 0.8883 1.9216 16 7 4.6499 0.3764 -0.2077 17 6 5.9226 -0.1957 -0.3375 18 6 6.1142 -1.2783 -1.1854 19 6 7.3674 -1.8452 -1.3086 20 6 8.4370 -1.3265 -0.5935 21 8 9.6718 -1.8820 -0.7192 22 6 9.7957 -2.9930 -1.6092 23 6 11.2465 -3.4790 -1.6193 24 6 11.3793 -4.6690 -2.5716 25 6 8.2463 -0.2449 0.2538 26 6 6.9924 0.3195 0.3819 27 1 -0.5400 0.9352 -0.0004 28 1 -0.5400 -0.9354 -0.0004 29 1 1.8500 -0.9352 0.0004 30 1 1.3584 2.1317 0.0894 31 1 2.6212 1.4027 -0.9314 32 1 1.4886 1.6968 2.5459 33 1 3.0988 1.3605 3.2259 34 1 2.5386 5.8661 4.4502 35 1 4.0570 0.4197 -0.9742 36 1 5.2822 -1.6801 -1.7448 37 1 7.5156 -2.6902 -1.9648 38 1 9.1441 -3.8005 -1.2754 39 1 9.5086 -2.6867 -2.6151 40 1 11.8979 -2.6714 -1.9534 41 1 11.5340 -3.7852 -0.6134 42 1 11.0915 -4.3632 -3.5775 43 1 12.4129 -5.0150 -2.5792 44 1 10.7279 -5.4765 -2.2371 45 1 9.0784 0.1556 0.8137 46 1 6.8439 1.1614 1.0419 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296494236.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:40 Heat of formation + Delta-G solvation = -32.964212 kcal Electronic energy + Delta-G solvation = -25983.999157 eV Core-core repulsion = 22260.224091 eV Total energy + Delta-G solvation = -3723.775067 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.79551 -40.78551 -38.73504 -37.25961 -35.72494 -34.95070 -34.47219 -33.78327 -32.01503 -30.64032 -29.21291 -27.38980 -26.92180 -24.74551 -24.12790 -22.86345 -22.23846 -21.31208 -20.57664 -19.38359 -19.12357 -18.93053 -18.33390 -17.18291 -16.90799 -16.81743 -16.45894 -15.94328 -15.74580 -15.32292 -15.16149 -14.96869 -14.85005 -14.58030 -14.36412 -14.12269 -13.80480 -13.61740 -13.48991 -13.37003 -13.15991 -12.95406 -12.84713 -12.53080 -12.42645 -12.27061 -12.16131 -11.95058 -11.74373 -11.72098 -11.57163 -11.09226 -10.83038 -10.77589 -10.35132 -9.97568 -9.52874 -8.63530 -8.32875 -6.37663 0.35448 0.38054 1.24225 1.33920 1.37627 1.45710 1.82227 2.15634 2.26953 2.31573 2.83233 2.98851 3.03695 3.82439 3.93095 3.99548 4.00394 4.06444 4.16880 4.26682 4.33165 4.34504 4.40694 4.52193 4.59670 4.64632 4.70173 4.81515 4.83394 4.86856 4.97195 5.04784 5.07129 5.15195 5.21274 5.30077 5.34728 5.39266 5.45401 5.51078 5.53985 5.71028 5.89694 5.92367 6.00468 6.27496 6.50585 6.63454 6.99834 7.23894 7.59837 8.83957 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.017943 B = 0.002687 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.151816 B =10416.965340 C =11497.994222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.185 4.185 3 C 0.132 3.868 4 N -0.605 5.605 5 C 0.245 3.755 6 C -0.534 4.534 7 H 0.029 0.971 8 C 0.011 3.989 9 N -0.945 5.945 10 Si 0.946 3.054 11 H -0.278 1.278 12 H -0.274 1.274 13 H -0.237 1.237 14 C 0.695 3.305 15 O -0.619 6.619 16 N -0.673 5.673 17 C 0.116 3.884 18 C -0.096 4.096 19 C -0.180 4.180 20 C 0.106 3.894 21 O -0.334 6.334 22 C 0.049 3.951 23 C -0.123 4.123 24 C -0.146 4.146 25 C -0.147 4.147 26 C -0.104 4.104 27 H 0.101 0.899 28 H 0.118 0.882 29 H 0.115 0.885 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.052 0.948 33 H 0.018 0.982 34 H 0.268 0.732 35 H 0.418 0.582 36 H 0.163 0.837 37 H 0.164 0.836 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.069 0.931 44 H 0.063 0.937 45 H 0.129 0.871 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.152 -21.968 -16.915 28.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.204 4.204 3 C 0.010 3.990 4 N -0.339 5.339 5 C 0.122 3.878 6 C -0.573 4.573 7 H 0.047 0.953 8 C -0.187 4.187 9 N -0.585 5.585 10 Si 0.769 3.231 11 H -0.204 1.204 12 H -0.199 1.199 13 H -0.160 1.160 14 C 0.397 3.603 15 O -0.498 6.498 16 N -0.324 5.324 17 C 0.021 3.979 18 C -0.117 4.117 19 C -0.199 4.199 20 C 0.060 3.940 21 O -0.248 6.248 22 C -0.025 4.025 23 C -0.161 4.161 24 C -0.203 4.203 25 C -0.166 4.166 26 C -0.125 4.125 27 H 0.119 0.881 28 H 0.137 0.863 29 H 0.133 0.867 30 H 0.102 0.898 31 H 0.113 0.887 32 H 0.069 0.931 33 H 0.036 0.964 34 H 0.077 0.923 35 H 0.258 0.742 36 H 0.180 0.820 37 H 0.182 0.818 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.088 0.912 44 H 0.082 0.918 45 H 0.147 0.853 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 6.772 -21.711 -16.030 27.824 hybrid contribution -0.441 0.706 0.707 1.092 sum 6.331 -21.006 -15.323 26.760 Atomic orbital electron populations 1.24085 0.95377 1.03081 0.97541 1.23273 0.96826 0.97811 1.02524 1.20806 0.92721 0.97059 0.88394 1.47143 1.09969 1.63052 1.13704 1.19211 0.95348 0.91880 0.81364 1.21562 1.40418 0.93483 1.01801 0.95309 1.25824 0.96019 0.95367 1.01473 1.70046 1.49456 1.08470 1.30494 0.85742 0.79044 0.79405 0.78913 1.20398 1.19947 1.16009 1.16115 0.82587 0.78453 0.83107 1.90857 1.53936 1.63417 1.41639 1.42511 1.16119 1.62987 1.10803 1.17693 0.83615 0.95659 1.00887 1.20943 0.98616 0.92682 0.99421 1.21299 0.91694 1.03399 1.03538 1.18971 0.84935 0.93837 0.96225 1.86051 1.27245 1.47644 1.63875 1.23155 0.99445 0.86834 0.93068 1.21509 0.93864 0.99240 1.01497 1.21674 1.03000 0.96640 0.98972 1.20339 0.97156 0.97601 1.01553 1.21077 0.91574 1.00151 0.99665 0.88099 0.86341 0.86731 0.89826 0.88700 0.93051 0.96363 0.92306 0.74172 0.81972 0.81831 0.90968 0.90639 0.91298 0.91510 0.91655 0.91170 0.91804 0.85342 0.87105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.28 14.32 67.79 0.97 -2.31 16 2 C -0.19 -4.33 9.85 25.65 0.25 -4.08 16 3 C 0.13 3.91 5.65 85.64 0.48 4.39 16 4 N -0.61 -24.92 2.44 -848.55 -2.07 -26.99 16 5 C 0.24 12.05 4.23 85.63 0.36 12.42 16 6 C -0.53 -31.68 9.94 25.60 0.25 -31.42 16 7 H 0.03 1.91 8.06 -2.91 -0.02 1.89 16 8 C 0.01 0.67 5.47 84.66 0.46 1.13 16 9 N -0.94 -60.24 13.96 21.45 0.30 -59.94 16 10 Si 0.95 44.94 27.47 68.60 1.88 46.82 16 11 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16 12 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 13 H -0.24 -10.07 6.54 99.48 0.65 -9.42 16 14 C 0.70 29.62 8.12 179.05 1.45 31.07 16 15 O -0.62 -32.42 13.36 -4.03 -0.05 -32.47 16 16 N -0.67 -21.21 5.22 -317.06 -1.66 -22.87 16 17 C 0.12 3.58 6.30 38.10 0.24 3.82 16 18 C -0.10 -2.10 9.96 22.38 0.22 -1.88 16 19 C -0.18 -3.68 9.03 22.35 0.20 -3.47 16 20 C 0.11 2.73 6.69 22.50 0.15 2.88 16 21 O -0.33 -7.78 10.14 -93.34 -0.95 -8.72 16 22 C 0.05 0.72 4.74 71.98 0.34 1.06 16 23 C -0.12 -1.49 6.30 30.59 0.19 -1.29 16 24 C -0.15 -1.10 9.91 71.98 0.71 -0.39 16 25 C -0.15 -4.59 9.98 22.35 0.22 -4.37 16 26 C -0.10 -3.75 8.69 22.38 0.19 -3.56 16 27 H 0.10 2.03 7.84 -2.91 -0.02 2.01 16 28 H 0.12 1.87 8.06 -2.91 -0.02 1.84 16 29 H 0.11 2.50 8.06 -2.91 -0.02 2.47 16 30 H 0.08 2.63 7.72 -2.39 -0.02 2.61 16 31 H 0.10 2.25 6.30 -2.39 -0.02 2.23 16 32 H 0.05 2.33 7.13 -2.39 -0.02 2.31 16 33 H 0.02 0.98 6.85 -2.39 -0.02 0.96 16 34 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 35 H 0.42 9.83 6.52 -92.71 -0.60 9.23 16 36 H 0.16 2.32 8.06 -2.91 -0.02 2.29 16 37 H 0.16 2.10 6.29 -2.91 -0.02 2.08 16 38 H 0.07 0.88 7.65 -2.39 -0.02 0.86 16 39 H 0.08 0.87 7.67 -2.39 -0.02 0.85 16 40 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.07 0.88 8.14 -2.39 -0.02 0.87 16 42 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 43 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 44 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 45 H 0.13 3.86 8.06 -2.91 -0.02 3.83 16 46 H 0.11 4.90 6.22 -2.91 -0.02 4.88 16 Total: -1.00 -80.10 382.01 4.49 -75.61 By element: Atomic # 1 Polarization: 24.25 SS G_CDS: 0.31 Total: 24.57 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: 6.72 Total: 3.99 kcal Atomic # 7 Polarization: -106.37 SS G_CDS: -3.43 Total: -109.80 kcal Atomic # 8 Polarization: -40.20 SS G_CDS: -1.00 Total: -41.20 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 1.88 Total: 46.82 kcal Total: -80.10 4.49 -75.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296494236.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.646 kcal (2) G-P(sol) polarization free energy of solvation -80.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds