Wall clock time and date at job start Tue Mar 31 2020 14:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50702 * 120.00207 * 2 1 4 4 O 1.42899 * 109.47108 * 134.99832 * 3 2 1 5 5 C 1.35905 * 116.99322 * 179.97438 * 4 3 2 6 6 C 1.38751 * 120.06266 * 0.25143 * 5 4 3 7 7 C 1.38125 * 119.94478 * 180.31845 * 6 5 4 8 8 C 1.38278 * 120.05373 * 359.68088 * 7 6 5 9 9 C 1.38243 * 120.11738 * 0.02562 * 8 7 6 10 10 C 1.38165 * 120.05389 * 0.02562 * 9 8 7 11 11 C 1.50696 * 120.03008 * 179.97438 * 10 9 8 12 12 N 1.46505 * 109.46873 * 259.99829 * 11 10 9 13 13 C 1.34770 * 120.00284 * 179.97438 * 12 11 10 14 14 O 1.21286 * 119.99886 * 0.02562 * 13 12 11 15 15 C 1.50701 * 120.00293 * 179.97438 * 13 12 11 16 16 H 1.09002 * 109.47060 * 40.00174 * 15 13 12 17 17 N 1.46896 * 109.47239 * 160.00327 * 15 13 12 18 18 C 1.52997 * 109.47212 * 280.00118 * 15 13 12 19 19 C 1.52994 * 109.47404 * 174.99684 * 18 15 13 20 20 C 1.50698 * 109.47502 * 179.97438 * 19 18 15 21 21 H 1.08005 * 119.99844 * 0.02562 * 20 19 18 22 22 C 1.37873 * 120.00426 * 180.02562 * 20 19 18 23 23 N 1.31516 * 120.00640 * 180.02562 * 22 20 19 24 24 Si 1.86802 * 120.00012 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47190 * 89.99630 * 24 22 20 26 26 H 1.48502 * 109.47178 * 210.00167 * 24 22 20 27 27 H 1.48498 * 109.46759 * 329.99747 * 24 22 20 28 28 H 1.08002 * 120.00229 * 180.02562 * 1 2 3 29 29 H 1.08001 * 119.99764 * 359.97438 * 1 2 3 30 30 H 1.08003 * 120.00200 * 179.97438 * 2 1 3 31 31 H 1.09002 * 109.46862 * 14.99487 * 3 2 1 32 32 H 1.09001 * 109.46742 * 254.99807 * 3 2 1 33 33 H 1.07998 * 120.02674 * 0.02562 * 6 5 4 34 34 H 1.08002 * 119.96782 * 179.70362 * 7 6 5 35 35 H 1.08007 * 119.94476 * 180.02562 * 8 7 6 36 36 H 1.08000 * 119.97478 * 180.02562 * 9 8 7 37 37 H 1.08996 * 109.47693 * 139.99874 * 11 10 9 38 38 H 1.09004 * 109.47243 * 19.99200 * 11 10 9 39 39 H 0.97004 * 120.00069 * 359.97438 * 12 11 10 40 40 H 1.00900 * 111.00550 * 59.99964 * 17 15 13 41 41 H 1.00896 * 111.00310 * 183.95550 * 17 15 13 42 42 H 1.09000 * 109.47325 * 294.99852 * 18 15 13 43 43 H 1.09008 * 109.47017 * 54.99761 * 18 15 13 44 44 H 1.09000 * 109.47476 * 300.00087 * 19 18 15 45 45 H 1.09008 * 109.46970 * 60.00049 * 19 18 15 46 46 H 0.96993 * 120.00296 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2412 0.9527 5 6 3.9097 2.3450 1.0781 6 6 3.6567 3.4683 0.3040 7 6 4.4581 4.5864 0.4287 8 6 5.5077 4.5892 1.3289 9 6 5.7582 3.4734 2.1057 10 6 4.9602 2.3521 1.9840 11 6 5.2341 1.1360 2.8307 12 7 5.9658 0.1442 2.0386 13 6 6.3218 -1.0314 2.5930 14 8 6.0360 -1.2687 3.7476 15 6 7.0739 -2.0518 1.7780 16 1 7.8143 -1.5470 1.1574 17 7 7.7505 -2.9952 2.6780 18 6 6.0935 -2.8138 0.8842 19 6 6.8697 -3.7616 -0.0323 20 6 5.9040 -4.5127 -0.9123 21 1 4.8426 -4.3317 -0.8267 22 6 6.3752 -5.4308 -1.8265 23 7 5.5325 -6.0859 -2.5949 24 14 8.2108 -5.7444 -1.9740 25 1 8.6023 -6.8372 -1.0480 26 1 8.5353 -6.1373 -3.3689 27 1 8.9539 -4.5077 -1.6226 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3855 2.1161 0.2659 32 1 2.4756 1.4867 -0.9927 33 1 2.8367 3.4667 -0.3989 34 1 4.2644 5.4592 -0.1771 35 1 6.1329 5.4645 1.4253 36 1 6.5784 3.4783 2.8084 37 1 4.2902 0.7074 3.1673 38 1 5.8321 1.4227 3.6959 39 1 6.1941 0.3338 1.1150 40 1 7.0851 -3.4763 3.2644 41 1 8.3140 -3.6507 2.1576 42 1 5.4077 -3.3898 1.5055 43 1 5.5277 -2.1054 0.2789 44 1 7.5555 -3.1858 -0.6537 45 1 7.4355 -4.4700 0.5730 46 1 5.8641 -6.7315 -3.2383 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424118445.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:38 Heat of formation + Delta-G solvation = -39.190095 kcal Electronic energy + Delta-G solvation = -26307.423562 eV Core-core repulsion = 22583.378521 eV Total energy + Delta-G solvation = -3724.045041 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.63472 -39.43242 -37.87352 -35.69626 -34.82060 -34.21040 -32.77875 -31.59125 -30.28164 -30.20663 -27.47758 -26.82248 -25.74062 -23.45132 -22.52146 -21.70742 -20.49289 -20.06850 -19.78246 -18.37192 -17.43105 -16.66765 -16.61485 -16.33331 -16.05256 -15.52061 -15.05952 -14.81213 -14.55189 -14.46886 -14.24958 -14.04944 -13.56020 -13.37917 -13.20068 -12.90887 -12.89614 -12.69527 -12.64401 -12.43178 -11.86613 -11.67960 -11.45328 -11.41451 -11.29957 -11.00484 -10.95342 -10.31750 -10.08100 -9.84868 -9.71916 -9.49571 -9.29581 -9.13351 -8.88664 -8.60664 -8.44372 -8.24449 -6.10532 -4.09634 0.94785 1.15519 1.86242 2.98954 3.12045 3.24217 3.26143 3.34197 3.35979 3.69530 4.38843 4.38972 4.47637 4.62716 4.73643 4.80185 4.88338 5.02210 5.05899 5.10050 5.13130 5.20516 5.22833 5.33765 5.45069 5.53310 5.59799 5.67573 5.67688 5.84250 6.02340 6.15462 6.19625 6.23906 6.35423 6.38406 6.39448 6.51719 6.58192 6.70241 7.12596 7.15494 7.25382 7.39640 7.68829 7.74970 7.82840 8.46189 8.52222 8.93610 9.51071 11.02724 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.010547 B = 0.003499 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2654.104303 B = 8000.680808 C = 9266.088372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.154 4.154 3 C 0.088 3.912 4 O -0.300 6.300 5 C 0.150 3.850 6 C -0.213 4.213 7 C -0.073 4.073 8 C -0.162 4.162 9 C -0.062 4.062 10 C -0.140 4.140 11 C 0.174 3.826 12 N -0.725 5.725 13 C 0.527 3.473 14 O -0.540 6.540 15 C 0.072 3.928 16 H 0.095 0.905 17 N -0.831 5.831 18 C -0.128 4.128 19 C -0.011 4.011 20 C -0.522 4.522 21 H 0.071 0.929 22 C 0.067 3.933 23 N -0.902 5.902 24 Si 0.880 3.120 25 H -0.276 1.276 26 H -0.288 1.288 27 H -0.265 1.265 28 H 0.109 0.891 29 H 0.097 0.903 30 H 0.126 0.874 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.129 0.871 34 H 0.125 0.875 35 H 0.125 0.875 36 H 0.131 0.869 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.401 0.599 40 H 0.348 0.652 41 H 0.349 0.651 42 H 0.060 0.940 43 H 0.062 0.938 44 H 0.018 0.982 45 H 0.011 0.989 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.104 22.315 5.607 23.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.172 4.172 3 C 0.013 3.987 4 O -0.213 6.213 5 C 0.103 3.897 6 C -0.232 4.232 7 C -0.091 4.091 8 C -0.181 4.181 9 C -0.080 4.080 10 C -0.141 4.141 11 C 0.051 3.949 12 N -0.378 5.378 13 C 0.313 3.687 14 O -0.416 6.416 15 C -0.043 4.043 16 H 0.113 0.887 17 N -0.362 5.362 18 C -0.168 4.168 19 C -0.048 4.048 20 C -0.560 4.560 21 H 0.089 0.911 22 C -0.134 4.134 23 N -0.540 5.540 24 Si 0.707 3.293 25 H -0.202 1.202 26 H -0.214 1.214 27 H -0.190 1.190 28 H 0.127 0.873 29 H 0.115 0.885 30 H 0.144 0.856 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.147 0.853 34 H 0.143 0.857 35 H 0.143 0.857 36 H 0.149 0.851 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.235 0.765 40 H 0.161 0.839 41 H 0.164 0.836 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.036 0.964 45 H 0.029 0.971 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.959 22.446 6.728 23.764 hybrid contribution 0.240 -0.702 -1.523 1.694 sum -3.719 21.744 5.204 22.665 Atomic orbital electron populations 1.23859 0.95381 1.02455 0.99293 1.22733 0.95737 0.98005 1.00773 1.21868 0.87632 0.97017 0.92145 1.86199 1.41816 1.35060 1.58224 1.18887 0.90596 0.86086 0.94087 1.21267 1.03857 0.94305 1.03780 1.20983 0.93995 0.97267 0.96885 1.21047 0.99515 0.98951 0.98549 1.20971 0.97414 0.91731 0.97921 1.19281 0.96952 0.97383 1.00525 1.19903 0.97345 0.85364 0.92333 1.45988 1.58868 1.16807 1.16102 1.20742 0.78649 0.81844 0.87450 1.90637 1.55039 1.78070 1.17805 1.21496 0.96449 0.93470 0.92886 0.88689 1.58727 1.28344 1.24287 1.24886 1.22178 0.97917 0.98912 0.97774 1.19577 0.96287 0.94369 0.94576 1.21067 0.94666 1.21667 1.18569 0.91101 1.25036 0.97750 0.95407 0.95239 1.69908 1.34472 1.26462 1.23193 0.86776 0.86067 0.79051 0.77375 1.20210 1.21359 1.18963 0.87258 0.88518 0.85625 0.91620 0.90812 0.85350 0.85750 0.85737 0.85088 0.90566 0.90972 0.76538 0.83862 0.83615 0.92120 0.91890 0.96400 0.97070 0.92671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.56 14.31 29.02 0.42 -1.14 16 2 C -0.15 -1.66 9.89 -36.02 -0.36 -2.02 16 3 C 0.09 0.87 5.15 36.01 0.19 1.05 16 4 O -0.30 -3.69 9.36 -19.44 -0.18 -3.88 16 5 C 0.15 1.67 6.66 -39.21 -0.26 1.41 16 6 C -0.21 -1.96 9.04 -39.43 -0.36 -2.32 16 7 C -0.07 -0.59 10.04 -39.61 -0.40 -0.98 16 8 C -0.16 -1.30 10.04 -39.56 -0.40 -1.70 16 9 C -0.06 -0.56 9.67 -39.61 -0.38 -0.94 16 10 C -0.14 -1.53 5.26 -104.47 -0.55 -2.08 16 11 C 0.17 2.20 5.46 -5.19 -0.03 2.17 16 12 N -0.72 -10.01 5.55 -61.47 -0.34 -10.35 16 13 C 0.53 8.87 7.08 -10.99 -0.08 8.80 16 14 O -0.54 -10.72 16.25 5.55 0.09 -10.63 16 15 C 0.07 1.21 3.21 -68.87 -0.22 0.99 16 16 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 17 N -0.83 -13.86 8.94 -5.66 -0.05 -13.91 16 18 C -0.13 -2.48 4.78 -26.74 -0.13 -2.61 16 19 C -0.01 -0.24 3.81 -27.89 -0.11 -0.35 16 20 C -0.52 -14.55 9.66 -34.44 -0.33 -14.89 16 21 H 0.07 2.15 7.99 -52.48 -0.42 1.73 16 22 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 23 N -0.90 -27.45 13.96 55.43 0.77 -26.68 16 24 Si 0.88 21.23 27.47 -169.99 -4.67 16.56 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 26 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 27 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 28 H 0.11 0.92 8.06 -52.49 -0.42 0.50 16 29 H 0.10 0.69 7.90 -52.49 -0.41 0.28 16 30 H 0.13 1.57 8.06 -52.48 -0.42 1.14 16 31 H 0.07 0.52 7.37 -51.93 -0.38 0.14 16 32 H 0.07 0.66 7.67 -51.93 -0.40 0.26 16 33 H 0.13 0.96 6.30 -52.49 -0.33 0.63 16 34 H 0.12 0.71 8.06 -52.49 -0.42 0.28 16 35 H 0.12 0.73 8.06 -52.48 -0.42 0.31 16 36 H 0.13 0.98 8.04 -52.49 -0.42 0.56 16 37 H 0.08 1.09 7.86 -51.93 -0.41 0.69 16 38 H 0.07 0.88 8.00 -51.93 -0.42 0.47 16 39 H 0.40 4.99 8.46 -40.82 -0.35 4.65 16 40 H 0.35 5.94 8.58 -39.29 -0.34 5.60 16 41 H 0.35 5.59 7.55 -39.29 -0.30 5.30 16 42 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.06 1.21 8.14 -51.92 -0.42 0.78 16 44 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16 45 H 0.01 0.25 6.29 -51.92 -0.33 -0.08 16 46 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 385.99 15.07 5.82 5.82 Total: -1.00 -33.30 385.99 -8.65 -41.95 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: -7.00 Total: 13.91 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: -3.09 Total: -12.79 kcal Atomic # 7 Polarization: -51.32 SS G_CDS: 0.38 Total: -50.94 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: -0.09 Total: -14.51 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.67 Total: 16.56 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.30 -8.65 -41.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424118445.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.760 kcal (2) G-P(sol) polarization free energy of solvation -33.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds