Wall clock time and date at job start Tue Mar 31 2020 14:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50702 * 120.00207 * 2 1 4 4 O 1.42899 * 109.47108 * 134.99832 * 3 2 1 5 5 C 1.35905 * 116.99322 * 179.97438 * 4 3 2 6 6 C 1.38751 * 120.06266 * 0.25143 * 5 4 3 7 7 C 1.38125 * 119.94478 * 180.31845 * 6 5 4 8 8 C 1.38278 * 120.05373 * 359.68088 * 7 6 5 9 9 C 1.38243 * 120.11738 * 0.02562 * 8 7 6 10 10 C 1.38165 * 120.05389 * 0.02562 * 9 8 7 11 11 C 1.50696 * 120.03008 * 179.97438 * 10 9 8 12 12 N 1.46505 * 109.46873 * 259.99829 * 11 10 9 13 13 C 1.34770 * 120.00284 * 179.97438 * 12 11 10 14 14 O 1.21286 * 119.99886 * 0.02562 * 13 12 11 15 15 C 1.50701 * 120.00293 * 179.97438 * 13 12 11 16 16 H 1.09002 * 109.47060 * 40.00174 * 15 13 12 17 17 N 1.46896 * 109.47239 * 160.00327 * 15 13 12 18 18 C 1.52997 * 109.47212 * 280.00118 * 15 13 12 19 19 C 1.52994 * 109.47404 * 174.99684 * 18 15 13 20 20 C 1.50698 * 109.47502 * 179.97438 * 19 18 15 21 21 H 1.08005 * 119.99844 * 0.02562 * 20 19 18 22 22 C 1.37873 * 120.00426 * 180.02562 * 20 19 18 23 23 N 1.31516 * 120.00640 * 180.02562 * 22 20 19 24 24 Si 1.86802 * 120.00012 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47190 * 89.99630 * 24 22 20 26 26 H 1.48502 * 109.47178 * 210.00167 * 24 22 20 27 27 H 1.48498 * 109.46759 * 329.99747 * 24 22 20 28 28 H 1.08002 * 120.00229 * 180.02562 * 1 2 3 29 29 H 1.08001 * 119.99764 * 359.97438 * 1 2 3 30 30 H 1.08003 * 120.00200 * 179.97438 * 2 1 3 31 31 H 1.09002 * 109.46862 * 14.99487 * 3 2 1 32 32 H 1.09001 * 109.46742 * 254.99807 * 3 2 1 33 33 H 1.07998 * 120.02674 * 0.02562 * 6 5 4 34 34 H 1.08002 * 119.96782 * 179.70362 * 7 6 5 35 35 H 1.08007 * 119.94476 * 180.02562 * 8 7 6 36 36 H 1.08000 * 119.97478 * 180.02562 * 9 8 7 37 37 H 1.08996 * 109.47693 * 139.99874 * 11 10 9 38 38 H 1.09004 * 109.47243 * 19.99200 * 11 10 9 39 39 H 0.97004 * 120.00069 * 359.97438 * 12 11 10 40 40 H 1.00900 * 111.00550 * 59.99964 * 17 15 13 41 41 H 1.00896 * 111.00310 * 183.95550 * 17 15 13 42 42 H 1.09000 * 109.47325 * 294.99852 * 18 15 13 43 43 H 1.09008 * 109.47017 * 54.99761 * 18 15 13 44 44 H 1.09000 * 109.47476 * 300.00087 * 19 18 15 45 45 H 1.09008 * 109.46970 * 60.00049 * 19 18 15 46 46 H 0.96993 * 120.00296 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2412 0.9527 5 6 3.9097 2.3450 1.0781 6 6 3.6567 3.4683 0.3040 7 6 4.4581 4.5864 0.4287 8 6 5.5077 4.5892 1.3289 9 6 5.7582 3.4734 2.1057 10 6 4.9602 2.3521 1.9840 11 6 5.2341 1.1360 2.8307 12 7 5.9658 0.1442 2.0386 13 6 6.3218 -1.0314 2.5930 14 8 6.0360 -1.2687 3.7476 15 6 7.0739 -2.0518 1.7780 16 1 7.8143 -1.5470 1.1574 17 7 7.7505 -2.9952 2.6780 18 6 6.0935 -2.8138 0.8842 19 6 6.8697 -3.7616 -0.0323 20 6 5.9040 -4.5127 -0.9123 21 1 4.8426 -4.3317 -0.8267 22 6 6.3752 -5.4308 -1.8265 23 7 5.5325 -6.0859 -2.5949 24 14 8.2108 -5.7444 -1.9740 25 1 8.6023 -6.8372 -1.0480 26 1 8.5353 -6.1373 -3.3689 27 1 8.9539 -4.5077 -1.6226 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3855 2.1161 0.2659 32 1 2.4756 1.4867 -0.9927 33 1 2.8367 3.4667 -0.3989 34 1 4.2644 5.4592 -0.1771 35 1 6.1329 5.4645 1.4253 36 1 6.5784 3.4783 2.8084 37 1 4.2902 0.7074 3.1673 38 1 5.8321 1.4227 3.6959 39 1 6.1941 0.3338 1.1150 40 1 7.0851 -3.4763 3.2644 41 1 8.3140 -3.6507 2.1576 42 1 5.4077 -3.3898 1.5055 43 1 5.5277 -2.1054 0.2789 44 1 7.5555 -3.1858 -0.6537 45 1 7.4355 -4.4700 0.5730 46 1 5.8641 -6.7315 -3.2383 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424118445.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:37 Heat of formation + Delta-G solvation = -62.730924 kcal Electronic energy + Delta-G solvation = -26308.444369 eV Core-core repulsion = 22583.378521 eV Total energy + Delta-G solvation = -3725.065848 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.46290 -40.70587 -38.63919 -37.20382 -35.98511 -35.01861 -34.81611 -32.47779 -32.08938 -30.91558 -28.81129 -27.65221 -27.05124 -25.01176 -23.23104 -22.56832 -22.16756 -21.20993 -20.81480 -19.25381 -19.02022 -18.36033 -17.47039 -17.34203 -16.88303 -16.52523 -16.22033 -16.17840 -15.85896 -15.57934 -15.52944 -15.30929 -14.87326 -14.60393 -14.47479 -14.25375 -13.91559 -13.75713 -13.62249 -13.49136 -13.41926 -13.05098 -12.67494 -12.39693 -12.18803 -12.16811 -12.08701 -11.92466 -11.73530 -11.67980 -11.42353 -10.87423 -10.77631 -10.50070 -10.10625 -9.92031 -9.65893 -9.16317 -8.30601 -6.36186 0.24225 0.46369 1.07555 1.37881 1.39185 1.50835 1.62381 2.20390 2.35654 2.37505 2.85897 3.04875 3.60825 3.72136 3.75377 3.81124 3.89622 4.00781 4.08204 4.13130 4.17640 4.21105 4.34735 4.37168 4.49710 4.54287 4.57188 4.63937 4.71481 4.80804 4.90795 4.92830 5.01994 5.33657 5.35227 5.39079 5.45381 5.47799 5.54395 5.57329 5.61459 5.62293 5.86055 6.05069 6.24396 6.40946 6.48844 6.54451 6.71711 7.23037 7.28475 8.86256 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.010547 B = 0.003499 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2654.104303 B = 8000.680808 C = 9266.088372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.185 4.185 3 C 0.089 3.911 4 O -0.328 6.328 5 C 0.129 3.871 6 C -0.218 4.218 7 C -0.071 4.071 8 C -0.160 4.160 9 C -0.064 4.064 10 C -0.156 4.156 11 C 0.178 3.822 12 N -0.710 5.710 13 C 0.524 3.476 14 O -0.574 6.574 15 C 0.082 3.918 16 H 0.119 0.881 17 N -0.828 5.828 18 C -0.116 4.116 19 C -0.005 4.005 20 C -0.535 4.535 21 H 0.024 0.976 22 C 0.003 3.997 23 N -0.952 5.952 24 Si 0.954 3.046 25 H -0.267 1.267 26 H -0.287 1.287 27 H -0.238 1.238 28 H 0.111 0.889 29 H 0.123 0.877 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.144 0.856 34 H 0.153 0.847 35 H 0.151 0.849 36 H 0.146 0.854 37 H 0.052 0.948 38 H 0.077 0.923 39 H 0.409 0.591 40 H 0.345 0.655 41 H 0.355 0.645 42 H 0.039 0.961 43 H 0.058 0.942 44 H 0.031 0.969 45 H 0.025 0.975 46 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.142 24.996 5.410 25.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.203 4.203 3 C 0.015 3.985 4 O -0.242 6.242 5 C 0.083 3.917 6 C -0.237 4.237 7 C -0.089 4.089 8 C -0.178 4.178 9 C -0.082 4.082 10 C -0.157 4.157 11 C 0.055 3.945 12 N -0.362 5.362 13 C 0.311 3.689 14 O -0.453 6.453 15 C -0.033 4.033 16 H 0.136 0.864 17 N -0.360 5.360 18 C -0.156 4.156 19 C -0.042 4.042 20 C -0.573 4.573 21 H 0.043 0.957 22 C -0.193 4.193 23 N -0.593 5.593 24 Si 0.776 3.224 25 H -0.192 1.192 26 H -0.213 1.213 27 H -0.161 1.161 28 H 0.129 0.871 29 H 0.141 0.859 30 H 0.113 0.887 31 H 0.106 0.894 32 H 0.098 0.902 33 H 0.161 0.839 34 H 0.170 0.830 35 H 0.169 0.831 36 H 0.163 0.837 37 H 0.070 0.930 38 H 0.095 0.905 39 H 0.244 0.756 40 H 0.158 0.842 41 H 0.170 0.830 42 H 0.058 0.942 43 H 0.077 0.923 44 H 0.050 0.950 45 H 0.043 0.957 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.998 25.168 6.523 26.076 hybrid contribution -0.533 -1.478 -1.482 2.160 sum -2.530 23.690 5.041 24.352 Atomic orbital electron populations 1.24086 0.94711 1.03795 0.96601 1.22709 0.96581 0.97602 1.03411 1.21947 0.87540 0.96860 0.92140 1.86158 1.42707 1.36252 1.59090 1.19130 0.90940 0.86552 0.95085 1.21505 1.04561 0.93982 1.03618 1.21378 0.93228 0.97597 0.96649 1.21400 0.99534 0.99247 0.97616 1.21185 0.97367 0.91380 0.98281 1.19217 0.98117 0.97270 1.01136 1.19858 0.96011 0.85753 0.92848 1.45940 1.57682 1.16147 1.16445 1.20771 0.78520 0.82575 0.87024 1.90621 1.56516 1.78891 1.19266 1.21416 0.96052 0.93299 0.92551 0.86364 1.58745 1.28124 1.24447 1.24697 1.21987 0.97889 0.98322 0.97377 1.19495 0.95575 0.94721 0.94431 1.21414 0.93706 1.22438 1.19698 0.95733 1.26069 1.03600 0.94998 0.94664 1.70078 1.37274 1.27583 1.24354 0.85609 0.79123 0.80144 0.77480 1.19204 1.21268 1.16053 0.87088 0.85909 0.88736 0.89442 0.90209 0.83880 0.82960 0.83105 0.83668 0.92973 0.90475 0.75600 0.84212 0.82992 0.94187 0.92303 0.95033 0.95716 0.92497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.77 14.31 67.78 0.97 -1.80 16 2 C -0.18 -4.23 9.89 25.65 0.25 -3.97 16 3 C 0.09 1.77 5.15 71.24 0.37 2.14 16 4 O -0.33 -8.36 9.36 -92.48 -0.87 -9.23 16 5 C 0.13 2.82 6.66 22.51 0.15 2.97 16 6 C -0.22 -3.60 9.04 22.37 0.20 -3.40 16 7 C -0.07 -0.91 10.04 22.25 0.22 -0.69 16 8 C -0.16 -2.06 10.04 22.28 0.22 -1.83 16 9 C -0.06 -1.03 9.67 22.25 0.22 -0.81 16 10 C -0.16 -3.32 5.26 -19.77 -0.10 -3.43 16 11 C 0.18 4.58 5.46 85.63 0.47 5.05 16 12 N -0.71 -19.55 5.55 -466.78 -2.59 -22.14 16 13 C 0.52 17.62 7.08 87.66 0.62 18.24 16 14 O -0.57 -23.10 16.25 -3.05 -0.05 -23.15 16 15 C 0.08 2.65 3.21 44.17 0.14 2.80 16 16 H 0.12 3.31 8.14 -2.39 -0.02 3.30 16 17 N -0.83 -26.51 8.94 -171.81 -1.54 -28.05 16 18 C -0.12 -4.51 4.78 30.59 0.15 -4.37 16 19 C 0.00 -0.21 3.81 29.85 0.11 -0.10 16 20 C -0.53 -30.57 9.66 25.60 0.25 -30.32 16 21 H 0.02 1.57 7.99 -2.91 -0.02 1.55 16 22 C 0.00 0.20 5.47 84.65 0.46 0.66 16 23 N -0.95 -59.65 13.96 21.45 0.30 -59.35 16 24 Si 0.95 43.00 27.47 68.60 1.88 44.89 16 25 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 26 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 27 H -0.24 -9.60 6.54 99.48 0.65 -8.95 16 28 H 0.11 1.89 8.06 -2.91 -0.02 1.87 16 29 H 0.12 1.54 7.90 -2.91 -0.02 1.51 16 30 H 0.09 2.69 8.06 -2.91 -0.02 2.67 16 31 H 0.09 1.30 7.37 -2.39 -0.02 1.28 16 32 H 0.08 1.42 7.67 -2.39 -0.02 1.40 16 33 H 0.14 1.83 6.30 -2.91 -0.02 1.81 16 34 H 0.15 1.09 8.06 -2.91 -0.02 1.07 16 35 H 0.15 1.14 8.06 -2.91 -0.02 1.11 16 36 H 0.15 1.84 8.04 -2.91 -0.02 1.82 16 37 H 0.05 1.59 7.86 -2.39 -0.02 1.57 16 38 H 0.08 1.88 8.00 -2.39 -0.02 1.87 16 39 H 0.41 9.94 8.46 -92.71 -0.78 9.16 16 40 H 0.34 11.61 8.58 -89.69 -0.77 10.84 16 41 H 0.35 10.56 7.55 -89.70 -0.68 9.88 16 42 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 44 H 0.03 1.33 7.20 -2.39 -0.02 1.32 16 45 H 0.02 1.04 6.29 -2.38 -0.01 1.03 16 46 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -74.66 385.99 0.56 -74.09 By element: Atomic # 1 Polarization: 43.09 SS G_CDS: -1.28 Total: 41.80 kcal Atomic # 6 Polarization: -23.57 SS G_CDS: 4.70 Total: -18.86 kcal Atomic # 7 Polarization: -105.72 SS G_CDS: -3.83 Total: -109.54 kcal Atomic # 8 Polarization: -31.46 SS G_CDS: -0.92 Total: -32.38 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 1.88 Total: 44.89 kcal Total: -74.66 0.56 -74.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424118445.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.364 kcal (2) G-P(sol) polarization free energy of solvation -74.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds