Wall clock time and date at job start Tue Mar 31 2020 14:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47113 * 2 1 4 4 O 1.42900 * 109.47288 * 179.97438 * 3 2 1 5 5 C 1.35896 * 117.00223 * 179.97438 * 4 3 2 6 6 C 1.38757 * 120.14605 * 0.02562 * 5 4 3 7 7 C 1.37858 * 119.65767 * 180.17647 * 6 5 4 8 8 C 1.38890 * 120.58991 * 359.80139 * 7 6 5 9 9 C 1.37720 * 119.93077 * 359.87370 * 8 7 6 10 10 C 1.38399 * 120.14912 * 179.72354 * 5 4 3 11 11 C 1.50608 * 122.85984 * 180.77876 * 9 8 7 12 12 C 1.52782 * 110.85708 * 339.96538 * 11 9 8 13 13 N 1.47231 * 107.89345 * 47.49575 * 12 11 9 14 14 C 1.34778 * 121.34017 * 115.72996 * 13 12 11 15 15 O 1.21593 * 119.99883 * 354.76644 * 14 13 12 16 16 N 1.34773 * 120.00113 * 174.77034 * 14 13 12 17 17 C 1.46495 * 119.99880 * 184.97479 * 16 14 13 18 18 C 1.50700 * 109.47295 * 179.97438 * 17 16 14 19 19 H 1.08008 * 119.99612 * 359.97438 * 18 17 16 20 20 C 1.37879 * 120.00508 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99468 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00178 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47381 * 90.00059 * 22 20 18 24 24 H 1.48502 * 109.47199 * 210.00204 * 22 20 18 25 25 H 1.48501 * 109.46987 * 329.99800 * 22 20 18 26 26 C 1.46681 * 117.32178 * 295.71148 * 13 12 11 27 27 H 1.09003 * 109.47524 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47099 * 300.00096 * 1 2 3 29 29 H 1.08998 * 109.47567 * 59.99926 * 1 2 3 30 30 H 1.08996 * 109.47012 * 240.00075 * 2 1 3 31 31 H 1.08998 * 109.46851 * 119.99861 * 2 1 3 32 32 H 1.08998 * 109.47417 * 300.00159 * 3 2 1 33 33 H 1.09005 * 109.47217 * 59.99976 * 3 2 1 34 34 H 1.07994 * 120.17356 * 0.15639 * 6 5 4 35 35 H 1.08002 * 119.70584 * 179.81606 * 7 6 5 36 36 H 1.08007 * 119.72613 * 0.09952 * 10 5 4 37 37 H 1.09005 * 109.19589 * 219.61360 * 11 9 8 38 38 H 1.08995 * 109.20106 * 100.32077 * 11 9 8 39 39 H 1.08998 * 109.77747 * 287.89422 * 12 11 9 40 40 H 1.09004 * 109.77761 * 167.09510 * 12 11 9 41 41 H 0.97002 * 120.00188 * 4.96603 * 16 14 13 42 42 H 1.09004 * 109.47096 * 299.99276 * 17 16 14 43 43 H 1.09005 * 109.47566 * 59.99444 * 17 16 14 44 44 H 0.97006 * 119.99513 * 179.97438 * 21 20 18 45 45 H 1.08997 * 109.43260 * 284.29954 * 26 13 12 46 46 H 1.08998 * 109.39775 * 164.41509 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 0.0006 5 6 4.0859 2.6533 0.0001 6 6 3.3332 3.8190 -0.0003 7 6 3.9695 5.0419 -0.0045 8 6 5.3564 5.1171 -0.0041 9 6 6.1071 3.9625 0.0032 10 6 5.4678 2.7294 0.0065 11 6 7.6130 3.9671 0.0213 12 6 8.1587 5.3108 -0.4592 13 7 7.4235 6.3751 0.2438 14 6 8.0469 7.2124 1.0963 15 8 9.2186 7.0389 1.3710 16 7 7.3716 8.2420 1.6443 17 6 8.0746 9.2149 2.4841 18 6 7.1001 10.2574 2.9685 19 1 6.0610 10.2011 2.6792 20 6 7.5349 11.2831 3.7809 21 7 8.8003 11.3519 4.1326 22 14 6.3268 12.5749 4.3818 23 1 5.7348 12.1372 5.6714 24 1 7.0369 13.8647 4.5755 25 1 5.2483 12.7498 3.3760 26 6 5.9852 6.4879 -0.0213 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 2.2544 3.7685 0.0022 35 1 3.3843 5.9497 -0.0079 36 1 6.0541 1.8223 0.0101 37 1 7.9817 3.1761 -0.6319 38 1 7.9599 3.7822 1.0379 39 1 8.0082 5.4067 -1.5345 40 1 9.2215 5.3815 -0.2272 41 1 6.4201 8.3389 1.4826 42 1 8.5160 8.7042 3.3400 43 1 8.8613 9.6957 1.9026 44 1 9.1063 12.0737 4.7039 45 1 5.8314 6.9453 -0.9986 46 1 5.5232 7.1086 0.7464 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426449875.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:04 Heat of formation + Delta-G solvation = -50.994131 kcal Electronic energy + Delta-G solvation = -25910.363355 eV Core-core repulsion = 22185.806453 eV Total energy + Delta-G solvation = -3724.556903 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.69643 -39.60176 -38.15514 -35.55859 -34.32002 -34.14390 -33.10160 -32.10822 -30.54685 -29.59309 -27.34795 -26.72115 -25.14182 -23.89971 -22.85038 -22.19756 -21.74286 -20.66774 -19.04867 -18.21511 -17.54573 -16.63192 -16.39246 -16.18976 -15.89399 -15.43046 -14.86352 -14.68718 -14.59503 -14.40330 -14.20753 -14.00520 -13.54767 -13.40391 -13.08791 -12.91508 -12.76597 -12.54934 -12.31407 -12.12883 -12.10079 -11.85653 -11.69938 -11.53308 -11.38146 -11.14143 -10.94140 -10.86731 -10.81944 -10.68980 -10.27386 -9.39214 -9.34296 -8.90817 -8.71595 -8.46006 -8.16096 -7.72130 -6.13578 -4.19977 1.17451 1.26670 2.87960 3.16412 3.25804 3.32101 3.34624 3.54985 3.89633 4.32743 4.39898 4.42667 4.57669 4.65744 4.71121 4.73711 4.76383 4.91836 4.96583 5.03221 5.10675 5.15663 5.21897 5.22466 5.30240 5.41863 5.48248 5.50176 5.59408 5.61912 5.65426 5.75079 5.84092 5.93008 6.03585 6.16821 6.21226 6.43748 6.64381 6.73465 7.15771 7.22435 7.52875 7.56445 7.59723 7.87798 8.04046 8.77208 8.91443 9.33051 9.49120 10.96647 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.016060 B = 0.002516 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.061440 B =11127.128326 C =12515.835574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C 0.059 3.941 4 O -0.318 6.318 5 C 0.128 3.872 6 C -0.209 4.209 7 C -0.072 4.072 8 C -0.127 4.127 9 C -0.023 4.023 10 C -0.156 4.156 11 C -0.099 4.099 12 C 0.132 3.868 13 N -0.639 5.639 14 C 0.701 3.299 15 O -0.596 6.596 16 N -0.729 5.729 17 C 0.266 3.734 18 C -0.541 4.541 19 H 0.062 0.938 20 C 0.063 3.937 21 N -0.885 5.885 22 Si 0.904 3.096 23 H -0.279 1.279 24 H -0.285 1.285 25 H -0.273 1.273 26 C 0.159 3.841 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.127 0.873 35 H 0.128 0.872 36 H 0.129 0.871 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.067 0.933 40 H 0.099 0.901 41 H 0.385 0.615 42 H 0.026 0.974 43 H 0.025 0.975 44 H 0.265 0.735 45 H 0.075 0.925 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.298 -20.578 -11.930 28.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.017 4.017 4 O -0.232 6.232 5 C 0.083 3.917 6 C -0.228 4.228 7 C -0.091 4.091 8 C -0.128 4.128 9 C -0.023 4.023 10 C -0.174 4.174 11 C -0.137 4.137 12 C 0.009 3.991 13 N -0.379 5.379 14 C 0.403 3.597 15 O -0.475 6.475 16 N -0.382 5.382 17 C 0.145 3.855 18 C -0.579 4.579 19 H 0.080 0.920 20 C -0.140 4.140 21 N -0.522 5.522 22 Si 0.731 3.269 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.198 1.198 26 C 0.035 3.965 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.144 0.856 35 H 0.146 0.854 36 H 0.146 0.854 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.085 0.915 40 H 0.118 0.882 41 H 0.219 0.781 42 H 0.044 0.956 43 H 0.043 0.957 44 H 0.075 0.925 45 H 0.093 0.907 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.172 -20.699 -11.575 27.627 hybrid contribution -1.465 0.885 0.354 1.748 sum -15.637 -19.814 -11.221 27.623 Atomic orbital electron populations 1.21695 0.94232 1.02554 1.02276 1.21483 0.96046 0.94887 1.03718 1.22861 0.78589 0.98747 1.01458 1.86032 1.21179 1.27164 1.88827 1.18832 0.92204 0.83990 0.96695 1.21110 0.99833 0.92291 1.09570 1.20845 0.93486 0.97435 0.97300 1.19785 0.93377 0.95048 1.04604 1.19313 0.95602 0.91253 0.96153 1.20393 0.91301 0.98079 1.07676 1.20912 0.90662 0.98881 1.03286 1.21327 0.98071 0.84454 0.95278 1.47237 1.07831 1.35063 1.47734 1.15972 0.85004 0.79881 0.78858 1.90861 1.15489 1.75466 1.65701 1.45855 1.11957 1.27171 1.53233 1.18997 0.92442 0.85076 0.89013 1.21210 0.95183 1.09916 1.31636 0.92033 1.24944 0.95421 0.97872 0.95808 1.69982 1.14343 1.32566 1.35321 0.86417 0.80714 0.80642 0.79124 1.20497 1.21019 1.19790 1.20275 0.81209 0.93297 1.01749 0.91712 0.92303 0.92346 0.90853 0.90808 0.92064 0.92021 0.85557 0.85408 0.85351 0.89657 0.89662 0.91513 0.88248 0.78059 0.95647 0.95738 0.92482 0.90685 0.89283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 9.91 37.16 0.37 -0.29 16 2 C -0.12 -0.74 6.30 -26.73 -0.17 -0.90 16 3 C 0.06 0.44 4.75 37.16 0.18 0.61 16 4 O -0.32 -3.39 10.14 -19.41 -0.20 -3.59 16 5 C 0.13 1.46 6.68 -39.33 -0.26 1.20 16 6 C -0.21 -2.17 9.04 -39.53 -0.36 -2.53 16 7 C -0.07 -0.77 9.61 -39.48 -0.38 -1.15 16 8 C -0.13 -1.56 5.82 -104.51 -0.61 -2.17 16 9 C -0.02 -0.28 5.76 -104.61 -0.60 -0.88 16 10 C -0.16 -1.82 9.53 -39.28 -0.37 -2.20 16 11 C -0.10 -1.16 5.86 -28.04 -0.16 -1.33 16 12 C 0.13 1.79 6.43 -3.75 -0.02 1.76 16 13 N -0.64 -10.41 2.93 -180.12 -0.53 -10.93 16 14 C 0.70 15.05 8.32 -86.92 -0.72 14.33 16 15 O -0.60 -15.14 15.86 5.28 0.08 -15.05 16 16 N -0.73 -16.11 5.45 -66.41 -0.36 -16.47 16 17 C 0.27 7.22 5.43 -5.20 -0.03 7.19 16 18 C -0.54 -14.84 9.28 -34.44 -0.32 -15.16 16 19 H 0.06 1.58 7.60 -52.48 -0.40 1.18 16 20 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 21 N -0.88 -26.26 13.29 55.43 0.74 -25.52 16 22 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 26 C 0.16 2.07 6.07 -5.03 -0.03 2.04 16 27 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 29 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.40 7.67 -51.93 -0.40 0.00 16 33 H 0.06 0.43 7.67 -51.93 -0.40 0.03 16 34 H 0.13 1.03 6.33 -52.49 -0.33 0.70 16 35 H 0.13 1.10 8.05 -52.49 -0.42 0.68 16 36 H 0.13 1.33 8.05 -52.48 -0.42 0.91 16 37 H 0.09 0.77 8.11 -51.93 -0.42 0.35 16 38 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.10 1.49 7.10 -51.93 -0.37 1.12 16 41 H 0.39 7.36 5.98 -40.82 -0.24 7.12 16 42 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 45 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.09 1.15 5.97 -51.93 -0.31 0.84 16 LS Contribution 375.02 15.07 5.65 5.65 Total: -1.00 -33.82 375.02 -10.31 -44.13 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -7.08 Total: 3.67 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: -3.60 Total: 2.19 kcal Atomic # 7 Polarization: -52.78 SS G_CDS: -0.15 Total: -52.93 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: -0.11 Total: -18.65 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.82 -10.31 -44.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426449875.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.867 kcal (2) G-P(sol) polarization free energy of solvation -33.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds