Wall clock time and date at job start Tue Mar 31 2020 14:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47113 * 2 1 4 4 O 1.42900 * 109.47288 * 179.97438 * 3 2 1 5 5 C 1.35896 * 117.00223 * 179.97438 * 4 3 2 6 6 C 1.38757 * 120.14605 * 0.02562 * 5 4 3 7 7 C 1.37858 * 119.65767 * 180.17647 * 6 5 4 8 8 C 1.38890 * 120.58991 * 359.80139 * 7 6 5 9 9 C 1.37720 * 119.93077 * 359.87370 * 8 7 6 10 10 C 1.38399 * 120.14912 * 179.72354 * 5 4 3 11 11 C 1.50608 * 122.85984 * 180.77876 * 9 8 7 12 12 C 1.52782 * 110.85708 * 339.96538 * 11 9 8 13 13 N 1.47231 * 107.89345 * 47.49575 * 12 11 9 14 14 C 1.34778 * 121.34017 * 115.72996 * 13 12 11 15 15 O 1.21593 * 119.99883 * 354.76644 * 14 13 12 16 16 N 1.34773 * 120.00113 * 174.77034 * 14 13 12 17 17 C 1.46495 * 119.99880 * 184.97479 * 16 14 13 18 18 C 1.50700 * 109.47295 * 179.97438 * 17 16 14 19 19 H 1.08008 * 119.99612 * 359.97438 * 18 17 16 20 20 C 1.37879 * 120.00508 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99468 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00178 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47381 * 90.00059 * 22 20 18 24 24 H 1.48502 * 109.47199 * 210.00204 * 22 20 18 25 25 H 1.48501 * 109.46987 * 329.99800 * 22 20 18 26 26 C 1.46681 * 117.32178 * 295.71148 * 13 12 11 27 27 H 1.09003 * 109.47524 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47099 * 300.00096 * 1 2 3 29 29 H 1.08998 * 109.47567 * 59.99926 * 1 2 3 30 30 H 1.08996 * 109.47012 * 240.00075 * 2 1 3 31 31 H 1.08998 * 109.46851 * 119.99861 * 2 1 3 32 32 H 1.08998 * 109.47417 * 300.00159 * 3 2 1 33 33 H 1.09005 * 109.47217 * 59.99976 * 3 2 1 34 34 H 1.07994 * 120.17356 * 0.15639 * 6 5 4 35 35 H 1.08002 * 119.70584 * 179.81606 * 7 6 5 36 36 H 1.08007 * 119.72613 * 0.09952 * 10 5 4 37 37 H 1.09005 * 109.19589 * 219.61360 * 11 9 8 38 38 H 1.08995 * 109.20106 * 100.32077 * 11 9 8 39 39 H 1.08998 * 109.77747 * 287.89422 * 12 11 9 40 40 H 1.09004 * 109.77761 * 167.09510 * 12 11 9 41 41 H 0.97002 * 120.00188 * 4.96603 * 16 14 13 42 42 H 1.09004 * 109.47096 * 299.99276 * 17 16 14 43 43 H 1.09005 * 109.47566 * 59.99444 * 17 16 14 44 44 H 0.97006 * 119.99513 * 179.97438 * 21 20 18 45 45 H 1.08997 * 109.43260 * 284.29954 * 26 13 12 46 46 H 1.08998 * 109.39775 * 164.41509 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 0.0006 5 6 4.0859 2.6533 0.0001 6 6 3.3332 3.8190 -0.0003 7 6 3.9695 5.0419 -0.0045 8 6 5.3564 5.1171 -0.0041 9 6 6.1071 3.9625 0.0032 10 6 5.4678 2.7294 0.0065 11 6 7.6130 3.9671 0.0213 12 6 8.1587 5.3108 -0.4592 13 7 7.4235 6.3751 0.2438 14 6 8.0469 7.2124 1.0963 15 8 9.2186 7.0389 1.3710 16 7 7.3716 8.2420 1.6443 17 6 8.0746 9.2149 2.4841 18 6 7.1001 10.2574 2.9685 19 1 6.0610 10.2011 2.6792 20 6 7.5349 11.2831 3.7809 21 7 8.8003 11.3519 4.1326 22 14 6.3268 12.5749 4.3818 23 1 5.7348 12.1372 5.6714 24 1 7.0369 13.8647 4.5755 25 1 5.2483 12.7498 3.3760 26 6 5.9852 6.4879 -0.0213 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 2.2544 3.7685 0.0022 35 1 3.3843 5.9497 -0.0079 36 1 6.0541 1.8223 0.0101 37 1 7.9817 3.1761 -0.6319 38 1 7.9599 3.7822 1.0379 39 1 8.0082 5.4067 -1.5345 40 1 9.2215 5.3815 -0.2272 41 1 6.4201 8.3389 1.4826 42 1 8.5160 8.7042 3.3400 43 1 8.8613 9.6957 1.9026 44 1 9.1063 12.0737 4.7039 45 1 5.8314 6.9453 -0.9986 46 1 5.5232 7.1086 0.7464 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426449875.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:03 Heat of formation + Delta-G solvation = -71.737657 kcal Electronic energy + Delta-G solvation = -25911.262862 eV Core-core repulsion = 22185.806453 eV Total energy + Delta-G solvation = -3725.456409 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.72207 -40.84625 -39.25179 -36.75344 -36.17245 -34.77255 -34.59329 -33.68950 -31.56039 -30.62509 -29.09262 -27.55167 -26.22018 -25.19309 -24.16593 -23.40651 -22.38658 -21.88059 -20.57956 -19.44466 -18.57386 -18.03035 -17.59505 -17.24344 -17.11103 -16.72164 -16.45639 -16.04950 -15.62113 -15.36614 -15.17838 -14.98076 -14.80369 -14.71189 -14.18958 -14.08409 -13.98081 -13.70173 -13.49298 -13.22048 -13.04560 -12.94104 -12.85422 -12.75209 -12.69589 -12.32213 -12.19533 -12.01312 -11.89167 -11.59702 -11.46444 -11.44328 -11.19555 -10.79518 -10.08531 -9.75535 -9.45429 -9.02926 -8.27151 -6.43636 0.32837 0.39966 1.43951 1.47124 1.57800 1.73654 2.16821 2.21669 2.39480 2.68941 3.07654 3.18718 3.65214 3.71734 3.88968 3.95346 3.98645 4.01962 4.19340 4.22070 4.28686 4.34071 4.38640 4.53574 4.55567 4.60243 4.66219 4.76426 4.81190 4.84520 4.97097 5.08336 5.10502 5.12469 5.18111 5.25797 5.28306 5.35323 5.37761 5.45469 5.52812 5.58381 5.72185 5.79791 5.85730 6.13304 6.46221 6.67339 7.15795 7.26135 7.67466 8.85169 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.016060 B = 0.002516 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.061440 B =11127.128326 C =12515.835574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.122 4.122 3 C 0.052 3.948 4 O -0.332 6.332 5 C 0.120 3.880 6 C -0.208 4.208 7 C -0.071 4.071 8 C -0.142 4.142 9 C -0.036 4.036 10 C -0.166 4.166 11 C -0.092 4.092 12 C 0.127 3.873 13 N -0.630 5.630 14 C 0.698 3.302 15 O -0.644 6.644 16 N -0.723 5.723 17 C 0.285 3.715 18 C -0.554 4.554 19 H 0.083 0.917 20 C 0.003 3.997 21 N -0.930 5.930 22 Si 0.986 3.014 23 H -0.272 1.272 24 H -0.284 1.284 25 H -0.254 1.254 26 C 0.156 3.844 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.150 0.850 35 H 0.152 0.848 36 H 0.135 0.865 37 H 0.114 0.886 38 H 0.067 0.933 39 H 0.096 0.904 40 H 0.079 0.921 41 H 0.402 0.598 42 H -0.016 1.016 43 H -0.013 1.013 44 H 0.269 0.731 45 H 0.100 0.900 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.858 -20.784 -12.963 30.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.160 4.160 3 C -0.023 4.023 4 O -0.247 6.247 5 C 0.075 3.925 6 C -0.227 4.227 7 C -0.089 4.089 8 C -0.143 4.143 9 C -0.036 4.036 10 C -0.185 4.185 11 C -0.129 4.129 12 C 0.005 3.995 13 N -0.368 5.368 14 C 0.399 3.601 15 O -0.527 6.527 16 N -0.378 5.378 17 C 0.162 3.838 18 C -0.592 4.592 19 H 0.101 0.899 20 C -0.197 4.197 21 N -0.568 5.568 22 Si 0.809 3.191 23 H -0.197 1.197 24 H -0.209 1.209 25 H -0.178 1.178 26 C 0.034 3.966 27 H 0.090 0.910 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.168 0.832 35 H 0.169 0.831 36 H 0.153 0.847 37 H 0.132 0.868 38 H 0.085 0.915 39 H 0.114 0.886 40 H 0.097 0.903 41 H 0.239 0.761 42 H 0.002 0.998 43 H 0.005 0.995 44 H 0.077 0.923 45 H 0.117 0.883 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -17.802 -20.963 -12.664 30.278 hybrid contribution -0.379 0.805 0.616 1.082 sum -18.181 -20.158 -12.048 29.699 Atomic orbital electron populations 1.21686 0.92877 1.03181 1.02709 1.21496 0.97111 0.93969 1.03374 1.23117 0.77009 0.99891 1.02281 1.86025 1.22952 1.27009 1.88669 1.19014 0.92353 0.84714 0.96404 1.21387 1.01054 0.91696 1.08522 1.21092 0.92900 0.98605 0.96294 1.19789 0.94245 0.94297 1.05985 1.19371 0.95582 0.91705 0.96941 1.20501 0.91897 0.98119 1.07991 1.20837 0.90802 0.98466 1.02836 1.21569 0.96861 0.84547 0.96559 1.47233 1.09518 1.34102 1.45940 1.16131 0.84483 0.80231 0.79260 1.90822 1.17769 1.76695 1.67404 1.45452 1.12578 1.26802 1.53004 1.18432 0.92190 0.85598 0.87620 1.21572 0.95991 1.09858 1.31730 0.89870 1.26079 0.97409 1.00449 0.95721 1.70150 1.16906 1.33655 1.36131 0.85135 0.78151 0.76876 0.78906 1.19698 1.20938 1.17759 1.20511 0.78775 0.94378 1.02985 0.91044 0.92032 0.91733 0.91022 0.91388 0.90882 0.91414 0.83227 0.83077 0.84703 0.86759 0.91490 0.88614 0.90274 0.76075 0.99824 0.99461 0.92259 0.88262 0.89273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.91 71.98 0.71 -0.26 16 2 C -0.12 -1.24 6.30 30.59 0.19 -1.05 16 3 C 0.05 0.66 4.75 71.98 0.34 1.00 16 4 O -0.33 -6.54 10.14 -92.38 -0.94 -7.48 16 5 C 0.12 2.52 6.68 22.43 0.15 2.67 16 6 C -0.21 -3.73 9.04 22.30 0.20 -3.53 16 7 C -0.07 -1.31 9.61 22.34 0.21 -1.10 16 8 C -0.14 -3.21 5.82 -19.79 -0.12 -3.33 16 9 C -0.04 -0.83 5.76 -19.86 -0.11 -0.94 16 10 C -0.17 -3.66 9.53 22.47 0.21 -3.45 16 11 C -0.09 -2.08 5.86 29.75 0.17 -1.90 16 12 C 0.13 3.38 6.43 86.17 0.55 3.94 16 13 N -0.63 -20.34 2.93 -842.03 -2.47 -22.81 16 14 C 0.70 30.81 8.32 179.06 1.49 32.30 16 15 O -0.64 -34.47 15.86 -4.01 -0.06 -34.54 16 16 N -0.72 -32.66 5.45 -482.29 -2.63 -35.29 16 17 C 0.28 16.17 5.43 85.63 0.47 16.64 16 18 C -0.55 -30.53 9.28 25.60 0.24 -30.30 16 19 H 0.08 4.13 7.60 -2.91 -0.02 4.10 16 20 C 0.00 0.17 5.46 84.66 0.46 0.63 16 21 N -0.93 -56.64 13.29 21.45 0.28 -56.35 16 22 Si 0.99 42.46 29.54 68.60 2.03 44.49 16 23 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 24 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 25 H -0.25 -10.09 7.11 99.48 0.71 -9.38 16 26 C 0.16 3.78 6.07 85.64 0.52 4.30 16 27 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 28 H 0.06 0.38 8.14 -2.38 -0.02 0.36 16 29 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.07 0.76 8.14 -2.39 -0.02 0.75 16 32 H 0.07 0.76 7.67 -2.39 -0.02 0.74 16 33 H 0.07 0.78 7.67 -2.38 -0.02 0.76 16 34 H 0.15 1.90 6.33 -2.91 -0.02 1.88 16 35 H 0.15 2.03 8.05 -2.91 -0.02 2.01 16 36 H 0.14 2.66 8.05 -2.91 -0.02 2.64 16 37 H 0.11 1.89 8.11 -2.38 -0.02 1.87 16 38 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.08 2.44 7.10 -2.39 -0.02 2.43 16 41 H 0.40 15.14 5.98 -92.71 -0.55 14.59 16 42 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 43 H -0.01 -0.79 8.14 -2.38 -0.02 -0.81 16 44 H 0.27 15.24 8.31 -92.70 -0.77 14.47 16 45 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 46 H 0.09 2.14 5.97 -2.39 -0.01 2.13 16 Total: -1.00 -76.11 375.02 2.34 -73.77 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: 0.43 Total: 22.59 kcal Atomic # 6 Polarization: 9.91 SS G_CDS: 5.70 Total: 15.61 kcal Atomic # 7 Polarization: -109.63 SS G_CDS: -4.81 Total: -114.44 kcal Atomic # 8 Polarization: -41.01 SS G_CDS: -1.00 Total: -42.01 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -76.11 2.34 -73.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426449875.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.036 kcal (2) G-P(sol) polarization free energy of solvation -76.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds