Wall clock time and date at job start Tue Mar 31 2020 14:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47220 * 2 1 4 4 O 1.42903 * 109.46958 * 180.02562 * 3 2 1 5 5 C 1.35891 * 117.00001 * 179.97438 * 4 3 2 6 6 C 1.38806 * 120.02298 * 359.72408 * 5 4 3 7 7 C 1.38169 * 120.08519 * 179.76286 * 6 5 4 8 8 C 1.38167 * 120.12272 * 0.51513 * 7 6 5 9 9 C 1.38885 * 120.03893 * 359.73619 * 8 7 6 10 10 N 1.39942 * 120.03860 * 179.97438 * 9 8 7 11 11 C 1.34776 * 119.99803 * 333.56274 * 10 9 8 12 12 O 1.21585 * 120.00474 * 5.96073 * 11 10 9 13 13 N 1.34785 * 119.99871 * 185.96506 * 11 10 9 14 14 C 1.46499 * 120.00286 * 185.76305 * 13 11 10 15 15 C 1.52996 * 109.47188 * 175.69061 * 14 13 11 16 16 C 1.50701 * 115.55312 * 69.37368 * 15 14 13 17 17 H 1.07991 * 119.99755 * 264.04768 * 16 15 14 18 18 C 1.37878 * 119.99666 * 84.04944 * 16 15 14 19 19 N 1.31511 * 119.99490 * 176.05934 * 18 16 15 20 20 Si 1.86800 * 120.00043 * 356.05412 * 18 16 15 21 21 H 1.48494 * 109.47109 * 89.58562 * 20 18 16 22 22 H 1.48511 * 109.46829 * 209.58831 * 20 18 16 23 23 H 1.48497 * 109.47191 * 329.58306 * 20 18 16 24 24 C 1.53004 * 117.49777 * 283.70297 * 15 14 13 25 25 C 1.53002 * 117.49751 * 215.04861 * 15 14 13 26 26 C 1.38589 * 120.02155 * 179.97438 * 5 4 3 27 27 H 1.09001 * 109.47441 * 59.99269 * 1 2 3 28 28 H 1.08997 * 109.47548 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46498 * 300.00314 * 1 2 3 30 30 H 1.09000 * 109.46879 * 240.00045 * 2 1 3 31 31 H 1.08996 * 109.46916 * 120.00261 * 2 1 3 32 32 H 1.09000 * 109.47158 * 60.00215 * 3 2 1 33 33 H 1.08995 * 109.46879 * 300.00092 * 3 2 1 34 34 H 1.08002 * 119.95482 * 359.97438 * 6 5 4 35 35 H 1.07998 * 119.93843 * 180.25120 * 7 6 5 36 36 H 1.08005 * 119.97550 * 179.72194 * 8 7 6 37 37 H 0.96993 * 119.99672 * 153.56371 * 10 9 8 38 38 H 0.97003 * 119.99599 * 5.75917 * 13 11 10 39 39 H 1.09004 * 109.46895 * 295.68924 * 14 13 11 40 40 H 1.09000 * 109.46982 * 55.68402 * 14 13 11 41 41 H 0.97011 * 119.99361 * 180.02562 * 19 18 16 42 42 H 1.09000 * 117.49613 * 0.02562 * 24 15 14 43 43 H 1.08999 * 117.49632 * 145.01907 * 24 15 14 44 44 H 1.08996 * 117.49594 * 214.97867 * 25 15 14 45 45 H 1.08996 * 117.49689 * 359.97099 * 25 15 14 46 46 H 1.08005 * 120.05782 * 359.96472 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 3.4691 1.4424 -0.0006 5 6 4.0861 2.6532 -0.0012 6 6 3.3306 3.8177 -0.0070 7 6 3.9566 5.0494 -0.0027 8 6 5.3361 5.1261 -0.0034 9 6 6.0970 3.9643 -0.0028 10 7 7.4943 4.0420 -0.0040 11 6 8.1086 5.1225 -0.5252 12 8 7.4514 6.0761 -0.8953 13 7 9.4517 5.1458 -0.6363 14 6 10.1286 6.3655 -1.0840 15 6 11.6435 6.1608 -1.0202 16 6 12.2117 5.1938 -2.0267 17 1 12.3845 4.1647 -1.7489 18 6 12.5110 5.6233 -3.3023 19 7 13.0786 4.8003 -4.1568 20 14 12.1103 7.3738 -3.8166 21 1 13.2632 8.2569 -3.5069 22 1 11.8365 7.4105 -5.2758 23 1 10.9125 7.8453 -3.0763 24 6 12.3065 6.2172 0.3576 25 6 12.5036 7.3660 -0.6346 26 6 5.4700 2.7262 -0.0013 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6768 1.9563 0.8900 33 1 1.6767 1.9563 -0.8899 34 1 2.2521 3.7608 -0.0115 35 1 3.3664 5.9539 -0.0032 36 1 5.8229 6.0903 -0.0045 37 1 8.0206 3.3183 0.3703 38 1 9.9701 4.3550 -0.4198 39 1 9.8350 6.5883 -2.1098 40 1 9.8465 7.1960 -0.4368 41 1 13.2895 5.1026 -5.0542 42 1 11.6634 6.3998 1.2185 43 1 13.1539 5.5552 0.5358 44 1 13.4805 7.4593 -1.1088 45 1 11.9902 8.3048 -0.4270 46 1 6.0595 1.8212 -0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431202842.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:19 Heat of formation + Delta-G solvation = -16.677943 kcal Electronic energy + Delta-G solvation = -25676.548755 eV Core-core repulsion = 21953.479914 eV Total energy + Delta-G solvation = -3723.068841 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.63855 -39.70349 -37.79069 -36.96362 -34.56500 -34.10609 -33.53766 -32.16042 -30.44883 -29.14712 -26.91421 -26.58363 -25.14856 -22.90823 -22.66433 -21.78124 -21.41034 -20.48424 -19.37221 -18.42682 -18.02032 -16.60534 -16.53842 -16.20705 -16.02457 -15.65302 -15.23938 -14.76646 -14.62528 -14.42835 -14.18322 -13.93844 -13.60006 -13.36381 -12.95654 -12.84478 -12.72015 -12.49729 -12.43331 -12.20445 -12.00944 -11.69815 -11.57526 -11.17046 -11.01939 -10.90766 -10.73087 -10.58729 -10.26715 -10.19049 -9.76653 -9.56832 -9.23965 -8.69989 -8.64049 -8.51579 -8.34893 -7.84437 -6.18535 -4.23302 1.31343 1.51945 2.67129 3.16095 3.27717 3.37336 3.37946 3.42724 3.90689 4.37715 4.41304 4.50008 4.50817 4.80928 4.83017 4.92953 4.97992 5.02988 5.05626 5.10191 5.23585 5.37195 5.44513 5.54310 5.56500 5.62961 5.66082 5.71424 5.81216 5.98077 6.02871 6.18301 6.25989 6.29591 6.34088 6.39020 6.46159 6.61235 6.67441 6.95290 6.99848 7.02326 7.07971 7.24113 7.36478 7.64531 8.29299 8.37754 8.81399 8.82928 9.44498 10.92677 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.022937 B = 0.002318 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.426493 B =12073.929046 C =12363.724600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C 0.060 3.940 4 O -0.317 6.317 5 C 0.147 3.853 6 C -0.236 4.236 7 C -0.062 4.062 8 C -0.172 4.172 9 C 0.217 3.783 10 N -0.686 5.686 11 C 0.700 3.300 12 O -0.581 6.581 13 N -0.713 5.713 14 C 0.170 3.830 15 C -0.018 4.018 16 C -0.491 4.491 17 H 0.078 0.922 18 C 0.080 3.920 19 N -0.894 5.894 20 Si 0.876 3.124 21 H -0.277 1.277 22 H -0.293 1.293 23 H -0.255 1.255 24 C -0.177 4.177 25 C -0.190 4.190 26 C -0.193 4.193 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.159 0.841 37 H 0.408 0.592 38 H 0.403 0.597 39 H 0.068 0.932 40 H 0.045 0.955 41 H 0.266 0.734 42 H 0.073 0.927 43 H 0.088 0.912 44 H 0.091 0.909 45 H 0.074 0.926 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.574 -5.631 10.918 23.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.015 4.015 4 O -0.231 6.231 5 C 0.102 3.898 6 C -0.256 4.256 7 C -0.081 4.081 8 C -0.192 4.192 9 C 0.119 3.881 10 N -0.331 5.331 11 C 0.400 3.600 12 O -0.459 6.459 13 N -0.365 5.365 14 C 0.047 3.953 15 C -0.020 4.020 16 C -0.529 4.529 17 H 0.096 0.904 18 C -0.123 4.123 19 N -0.530 5.530 20 Si 0.704 3.296 21 H -0.203 1.203 22 H -0.219 1.219 23 H -0.179 1.179 24 C -0.214 4.214 25 C -0.228 4.228 26 C -0.215 4.215 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.141 0.859 35 H 0.143 0.857 36 H 0.177 0.823 37 H 0.243 0.757 38 H 0.237 0.763 39 H 0.086 0.914 40 H 0.064 0.936 41 H 0.076 0.924 42 H 0.091 0.909 43 H 0.106 0.894 44 H 0.109 0.891 45 H 0.092 0.908 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -20.870 -4.932 10.350 23.812 hybrid contribution 0.265 0.271 -0.240 0.449 sum -20.605 -4.661 10.110 23.420 Atomic orbital electron populations 1.21691 0.94312 1.02495 1.02213 1.21489 0.95969 0.94980 1.03755 1.22843 0.78630 0.98614 1.01453 1.86015 1.21109 1.27157 1.88833 1.18482 0.91392 0.83943 0.96013 1.21131 0.99652 0.92450 1.12363 1.20852 0.94242 0.96783 0.96228 1.21727 0.93360 0.99728 1.04385 1.17223 0.81828 0.93051 0.95966 1.42669 1.04786 1.22731 1.62942 1.15979 0.82752 0.82487 0.78761 1.90800 1.63924 1.35641 1.55529 1.45104 1.03677 1.17570 1.70143 1.21209 0.91678 0.83439 0.99016 1.19625 0.89057 0.97821 0.95460 1.20168 1.42382 0.96148 0.94159 0.90443 1.24965 0.93607 0.97474 0.96269 1.69890 1.40955 1.35992 1.06198 0.86910 0.79950 0.85257 0.77520 1.20265 1.21913 1.17909 1.22804 1.03434 1.02327 0.92857 1.22976 1.02278 0.92413 1.05116 1.19880 0.91915 0.96879 1.12784 0.92342 0.91753 0.92390 0.90786 0.90842 0.92076 0.92042 0.85945 0.85714 0.82344 0.75665 0.76273 0.91431 0.93621 0.92438 0.90879 0.89396 0.89063 0.90751 0.85055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.91 37.16 0.37 -0.35 16 2 C -0.12 -0.82 6.30 -26.73 -0.17 -0.98 16 3 C 0.06 0.49 4.74 37.16 0.18 0.67 16 4 O -0.32 -3.68 10.13 -19.40 -0.20 -3.87 16 5 C 0.15 1.86 6.68 -39.24 -0.26 1.60 16 6 C -0.24 -2.75 9.04 -39.40 -0.36 -3.10 16 7 C -0.06 -0.78 10.03 -39.63 -0.40 -1.18 16 8 C -0.17 -2.58 8.80 -39.37 -0.35 -2.92 16 9 C 0.22 3.15 6.44 -83.71 -0.54 2.61 16 10 N -0.69 -9.76 5.37 -14.24 -0.08 -9.83 16 11 C 0.70 12.48 8.44 -86.91 -0.73 11.75 16 12 O -0.58 -12.10 13.27 5.29 0.07 -12.03 16 13 N -0.71 -12.79 5.52 -65.22 -0.36 -13.15 16 14 C 0.17 3.50 5.01 -4.04 -0.02 3.48 16 15 C -0.02 -0.39 0.80 -155.66 -0.12 -0.52 16 16 C -0.49 -12.69 9.35 -34.44 -0.32 -13.01 16 17 H 0.08 2.16 8.06 -52.49 -0.42 1.74 16 18 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 19 N -0.89 -26.28 13.96 55.43 0.77 -25.50 16 20 Si 0.88 21.16 25.21 -169.99 -4.29 16.87 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 23 H -0.25 -5.90 5.46 56.52 0.31 -5.59 16 24 C -0.18 -3.28 9.96 -26.69 -0.27 -3.54 16 25 C -0.19 -3.79 7.81 -26.69 -0.21 -3.99 16 26 C -0.19 -2.54 9.88 -39.25 -0.39 -2.92 16 27 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.44 7.67 -51.93 -0.40 0.04 16 33 H 0.06 0.47 7.65 -51.93 -0.40 0.07 16 34 H 0.12 1.12 6.29 -52.49 -0.33 0.79 16 35 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 36 H 0.16 2.69 5.51 -52.48 -0.29 2.40 16 37 H 0.41 4.48 8.82 -40.82 -0.36 4.12 16 38 H 0.40 6.56 8.50 -40.82 -0.35 6.22 16 39 H 0.07 1.57 6.15 -51.93 -0.32 1.25 16 40 H 0.05 0.90 8.06 -51.93 -0.42 0.48 16 41 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 42 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 44 H 0.09 1.91 7.68 -51.93 -0.40 1.52 16 45 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 46 H 0.13 1.53 8.06 -52.48 -0.42 1.11 16 LS Contribution 375.77 15.07 5.66 5.66 Total: -1.00 -31.25 375.77 -9.24 -40.49 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: -7.14 Total: 11.68 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: -3.69 Total: -10.31 kcal Atomic # 7 Polarization: -48.83 SS G_CDS: 0.34 Total: -48.49 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: -0.13 Total: -15.91 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.29 Total: 16.87 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.25 -9.24 -40.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431202842.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.811 kcal (2) G-P(sol) polarization free energy of solvation -31.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds