Wall clock time and date at job start Tue Mar 31 2020 14:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47220 * 2 1 4 4 O 1.42903 * 109.46958 * 180.02562 * 3 2 1 5 5 C 1.35891 * 117.00001 * 179.97438 * 4 3 2 6 6 C 1.38806 * 120.02298 * 359.72408 * 5 4 3 7 7 C 1.38169 * 120.08519 * 179.76286 * 6 5 4 8 8 C 1.38167 * 120.12272 * 0.51513 * 7 6 5 9 9 C 1.38885 * 120.03893 * 359.73619 * 8 7 6 10 10 N 1.39942 * 120.03860 * 179.97438 * 9 8 7 11 11 C 1.34776 * 119.99803 * 333.56274 * 10 9 8 12 12 O 1.21585 * 120.00474 * 5.96073 * 11 10 9 13 13 N 1.34785 * 119.99871 * 185.96506 * 11 10 9 14 14 C 1.46499 * 120.00286 * 185.76305 * 13 11 10 15 15 C 1.52996 * 109.47188 * 175.69061 * 14 13 11 16 16 C 1.50701 * 115.55312 * 69.37368 * 15 14 13 17 17 H 1.07991 * 119.99755 * 264.04768 * 16 15 14 18 18 C 1.37878 * 119.99666 * 84.04944 * 16 15 14 19 19 N 1.31511 * 119.99490 * 176.05934 * 18 16 15 20 20 Si 1.86800 * 120.00043 * 356.05412 * 18 16 15 21 21 H 1.48494 * 109.47109 * 89.58562 * 20 18 16 22 22 H 1.48511 * 109.46829 * 209.58831 * 20 18 16 23 23 H 1.48497 * 109.47191 * 329.58306 * 20 18 16 24 24 C 1.53004 * 117.49777 * 283.70297 * 15 14 13 25 25 C 1.53002 * 117.49751 * 215.04861 * 15 14 13 26 26 C 1.38589 * 120.02155 * 179.97438 * 5 4 3 27 27 H 1.09001 * 109.47441 * 59.99269 * 1 2 3 28 28 H 1.08997 * 109.47548 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46498 * 300.00314 * 1 2 3 30 30 H 1.09000 * 109.46879 * 240.00045 * 2 1 3 31 31 H 1.08996 * 109.46916 * 120.00261 * 2 1 3 32 32 H 1.09000 * 109.47158 * 60.00215 * 3 2 1 33 33 H 1.08995 * 109.46879 * 300.00092 * 3 2 1 34 34 H 1.08002 * 119.95482 * 359.97438 * 6 5 4 35 35 H 1.07998 * 119.93843 * 180.25120 * 7 6 5 36 36 H 1.08005 * 119.97550 * 179.72194 * 8 7 6 37 37 H 0.96993 * 119.99672 * 153.56371 * 10 9 8 38 38 H 0.97003 * 119.99599 * 5.75917 * 13 11 10 39 39 H 1.09004 * 109.46895 * 295.68924 * 14 13 11 40 40 H 1.09000 * 109.46982 * 55.68402 * 14 13 11 41 41 H 0.97011 * 119.99361 * 180.02562 * 19 18 16 42 42 H 1.09000 * 117.49613 * 0.02562 * 24 15 14 43 43 H 1.08999 * 117.49632 * 145.01907 * 24 15 14 44 44 H 1.08996 * 117.49594 * 214.97867 * 25 15 14 45 45 H 1.08996 * 117.49689 * 359.97099 * 25 15 14 46 46 H 1.08005 * 120.05782 * 359.96472 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 3.4691 1.4424 -0.0006 5 6 4.0861 2.6532 -0.0012 6 6 3.3306 3.8177 -0.0070 7 6 3.9566 5.0494 -0.0027 8 6 5.3361 5.1261 -0.0034 9 6 6.0970 3.9643 -0.0028 10 7 7.4943 4.0420 -0.0040 11 6 8.1086 5.1225 -0.5252 12 8 7.4514 6.0761 -0.8953 13 7 9.4517 5.1458 -0.6363 14 6 10.1286 6.3655 -1.0840 15 6 11.6435 6.1608 -1.0202 16 6 12.2117 5.1938 -2.0267 17 1 12.3845 4.1647 -1.7489 18 6 12.5110 5.6233 -3.3023 19 7 13.0786 4.8003 -4.1568 20 14 12.1103 7.3738 -3.8166 21 1 13.2632 8.2569 -3.5069 22 1 11.8365 7.4105 -5.2758 23 1 10.9125 7.8453 -3.0763 24 6 12.3065 6.2172 0.3576 25 6 12.5036 7.3660 -0.6346 26 6 5.4700 2.7262 -0.0013 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6768 1.9563 0.8900 33 1 1.6767 1.9563 -0.8899 34 1 2.2521 3.7608 -0.0115 35 1 3.3664 5.9539 -0.0032 36 1 5.8229 6.0903 -0.0045 37 1 8.0206 3.3183 0.3703 38 1 9.9701 4.3550 -0.4198 39 1 9.8350 6.5883 -2.1098 40 1 9.8465 7.1960 -0.4368 41 1 13.2895 5.1026 -5.0542 42 1 11.6634 6.3998 1.2185 43 1 13.1539 5.5552 0.5358 44 1 13.4805 7.4593 -1.1088 45 1 11.9902 8.3048 -0.4270 46 1 6.0595 1.8212 -0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431202842.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:18 Heat of formation + Delta-G solvation = -36.506770 kcal Electronic energy + Delta-G solvation = -25677.408597 eV Core-core repulsion = 21953.479914 eV Total energy + Delta-G solvation = -3723.928683 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.81552 -40.77218 -39.11517 -38.28554 -35.67685 -35.11552 -34.67539 -34.20831 -31.42950 -30.23180 -28.36050 -27.47264 -26.91382 -23.82437 -23.72826 -23.26760 -22.20062 -21.72298 -21.07151 -19.45654 -19.43405 -18.31377 -17.31127 -17.22386 -17.06559 -17.01465 -16.80319 -16.17600 -15.96744 -15.61936 -15.13066 -14.92998 -14.80210 -14.74914 -14.55468 -14.22345 -13.91631 -13.62049 -13.50780 -13.13921 -13.07254 -12.88100 -12.60928 -12.40509 -12.25621 -12.17235 -11.95696 -11.74878 -11.62380 -11.59828 -11.34935 -10.98355 -10.96218 -10.68979 -10.36810 -9.98774 -9.41834 -8.92558 -8.29983 -6.35980 0.29347 0.49616 1.34832 1.40134 1.47085 1.52516 2.03706 2.27212 2.36843 2.85577 3.02763 3.08803 3.41722 3.85442 3.97891 3.99730 4.02262 4.14860 4.27962 4.32104 4.36539 4.37983 4.44257 4.51218 4.52785 4.57800 4.59253 4.77666 4.80084 4.83966 4.89652 5.11562 5.14100 5.20131 5.26127 5.27535 5.30865 5.34076 5.38777 5.48571 5.52654 5.66331 5.70158 5.92680 6.01652 6.28445 6.47134 6.72394 6.99720 7.34461 7.45632 8.84588 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.022937 B = 0.002318 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.426493 B =12073.929046 C =12363.724600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.122 4.122 3 C 0.051 3.949 4 O -0.329 6.329 5 C 0.143 3.857 6 C -0.228 4.228 7 C -0.061 4.061 8 C -0.195 4.195 9 C 0.197 3.803 10 N -0.672 5.672 11 C 0.699 3.301 12 O -0.612 6.612 13 N -0.711 5.711 14 C 0.181 3.819 15 C -0.043 4.043 16 C -0.477 4.477 17 H 0.045 0.955 18 C 0.025 3.975 19 N -0.944 5.944 20 Si 0.926 3.074 21 H -0.265 1.265 22 H -0.304 1.304 23 H -0.238 1.238 24 C -0.149 4.149 25 C -0.189 4.189 26 C -0.197 4.197 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.152 0.848 35 H 0.148 0.852 36 H 0.136 0.864 37 H 0.423 0.577 38 H 0.410 0.590 39 H 0.037 0.963 40 H 0.060 0.940 41 H 0.264 0.736 42 H 0.104 0.896 43 H 0.085 0.915 44 H 0.078 0.922 45 H 0.100 0.900 46 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.777 -5.133 12.681 26.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.160 4.160 3 C -0.024 4.024 4 O -0.243 6.243 5 C 0.097 3.903 6 C -0.248 4.248 7 C -0.080 4.080 8 C -0.215 4.215 9 C 0.101 3.899 10 N -0.318 5.318 11 C 0.400 3.600 12 O -0.493 6.493 13 N -0.364 5.364 14 C 0.057 3.943 15 C -0.044 4.044 16 C -0.515 4.515 17 H 0.063 0.937 18 C -0.174 4.174 19 N -0.584 5.584 20 Si 0.752 3.248 21 H -0.190 1.190 22 H -0.231 1.231 23 H -0.162 1.162 24 C -0.186 4.186 25 C -0.227 4.227 26 C -0.219 4.219 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.169 0.831 35 H 0.166 0.834 36 H 0.154 0.846 37 H 0.261 0.739 38 H 0.246 0.754 39 H 0.056 0.944 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.122 0.878 43 H 0.104 0.896 44 H 0.097 0.903 45 H 0.118 0.882 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -23.091 -4.470 12.163 26.478 hybrid contribution 0.840 -0.027 -0.717 1.105 sum -22.250 -4.497 11.446 25.423 Atomic orbital electron populations 1.21683 0.92807 1.03168 1.02737 1.21506 0.97156 0.93947 1.03395 1.23146 0.76842 0.99919 1.02446 1.86017 1.23071 1.26679 1.88559 1.18644 0.91423 0.84781 0.95468 1.21431 1.01098 0.91593 1.10662 1.21105 0.93400 0.98234 0.95223 1.21665 0.94683 0.98916 1.06272 1.17359 0.81643 0.93608 0.97305 1.42431 1.05052 1.22121 1.62239 1.16059 0.82459 0.82882 0.78604 1.90791 1.64499 1.37097 1.56869 1.44966 1.03893 1.17279 1.70261 1.20898 0.90861 0.84841 0.97743 1.19446 0.89639 0.98610 0.96696 1.20354 1.40601 0.95667 0.94852 0.93721 1.25716 0.94016 1.00950 0.96669 1.70025 1.43689 1.38024 1.06676 0.86092 0.80692 0.81484 0.76554 1.18972 1.23104 1.16163 1.22835 1.02792 1.00787 0.92201 1.23040 1.01297 0.93279 1.05055 1.20002 0.92638 0.96671 1.12582 0.91976 0.91067 0.91700 0.91403 0.91019 0.90736 0.91254 0.83076 0.83439 0.84614 0.73929 0.75445 0.94435 0.92167 0.92722 0.87810 0.89636 0.90349 0.88211 0.83985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 71.98 0.71 -0.36 16 2 C -0.12 -1.37 6.30 30.60 0.19 -1.18 16 3 C 0.05 0.71 4.74 71.98 0.34 1.05 16 4 O -0.33 -7.01 10.13 -92.33 -0.94 -7.95 16 5 C 0.14 3.36 6.68 22.49 0.15 3.51 16 6 C -0.23 -4.75 9.04 22.39 0.20 -4.55 16 7 C -0.06 -1.42 10.03 22.24 0.22 -1.20 16 8 C -0.19 -5.78 8.80 22.41 0.20 -5.59 16 9 C 0.20 5.65 6.44 38.13 0.25 5.89 16 10 N -0.67 -18.81 5.37 -317.23 -1.70 -20.51 16 11 C 0.70 24.76 8.44 179.05 1.51 26.28 16 12 O -0.61 -25.63 13.27 -3.98 -0.05 -25.69 16 13 N -0.71 -25.07 5.52 -478.53 -2.64 -27.72 16 14 C 0.18 7.24 5.01 86.38 0.43 7.67 16 15 C -0.04 -1.77 0.80 -52.93 -0.04 -1.82 16 16 C -0.48 -24.96 9.35 25.60 0.24 -24.72 16 17 H 0.04 2.57 8.06 -2.92 -0.02 2.55 16 18 C 0.02 1.37 5.47 84.66 0.46 1.84 16 19 N -0.94 -57.41 13.96 21.45 0.30 -57.11 16 20 Si 0.93 43.83 25.21 68.60 1.73 45.56 16 21 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 22 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 23 H -0.24 -10.56 5.46 99.48 0.54 -10.02 16 24 C -0.15 -5.11 9.96 30.62 0.30 -4.81 16 25 C -0.19 -7.05 7.81 30.62 0.24 -6.81 16 26 C -0.20 -4.99 9.88 22.48 0.22 -4.76 16 27 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.06 0.39 8.14 -2.39 -0.02 0.38 16 30 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.07 0.85 7.67 -2.39 -0.02 0.83 16 33 H 0.07 0.86 7.65 -2.39 -0.02 0.85 16 34 H 0.15 2.21 6.29 -2.91 -0.02 2.19 16 35 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 36 H 0.14 4.69 5.51 -2.91 -0.02 4.67 16 37 H 0.42 8.95 8.82 -92.71 -0.82 8.14 16 38 H 0.41 13.12 8.50 -92.71 -0.79 12.33 16 39 H 0.04 1.72 6.15 -2.38 -0.01 1.71 16 40 H 0.06 2.24 8.06 -2.39 -0.02 2.22 16 41 H 0.26 15.27 8.31 -92.70 -0.77 14.50 16 42 H 0.10 2.98 8.14 -2.39 -0.02 2.96 16 43 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 44 H 0.08 3.14 7.68 -2.39 -0.02 3.12 16 45 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 46 H 0.14 3.15 8.06 -2.91 -0.02 3.13 16 Total: -1.00 -69.01 375.77 1.56 -67.44 By element: Atomic # 1 Polarization: 36.28 SS G_CDS: -0.77 Total: 35.51 kcal Atomic # 6 Polarization: -15.19 SS G_CDS: 5.64 Total: -9.55 kcal Atomic # 7 Polarization: -101.29 SS G_CDS: -4.05 Total: -105.34 kcal Atomic # 8 Polarization: -32.64 SS G_CDS: -0.99 Total: -33.63 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 1.73 Total: 45.56 kcal Total: -69.01 1.56 -67.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431202842.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.938 kcal (2) G-P(sol) polarization free energy of solvation -69.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds