Wall clock time and date at job start Tue Mar 31 2020 14:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.46630 * 2 1 4 4 O 1.42902 * 109.46725 * 119.99764 * 2 1 3 5 5 C 1.35899 * 116.99365 * 155.02940 * 4 2 1 6 6 C 1.38810 * 120.01847 * 185.26080 * 5 4 2 7 7 C 1.38166 * 120.08557 * 179.97438 * 6 5 4 8 8 C 1.38171 * 120.12314 * 359.74401 * 7 6 5 9 9 C 1.38883 * 120.03907 * 0.51160 * 8 7 6 10 10 N 1.39936 * 120.04341 * 179.76758 * 9 8 7 11 11 C 1.34781 * 119.99589 * 324.43385 * 10 9 8 12 12 O 1.21580 * 120.00237 * 4.75378 * 11 10 9 13 13 N 1.34781 * 119.99744 * 184.75229 * 11 10 9 14 14 C 1.46500 * 119.99827 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.46926 * 184.76376 * 14 13 11 16 16 C 1.50694 * 115.55362 * 304.01789 * 15 14 13 17 17 H 1.08002 * 120.00339 * 95.19112 * 16 15 14 18 18 C 1.37873 * 119.99918 * 274.92519 * 16 15 14 19 19 N 1.31511 * 120.00166 * 355.50855 * 18 16 15 20 20 Si 1.86800 * 120.00107 * 175.51059 * 18 16 15 21 21 H 1.48495 * 109.47193 * 59.99447 * 20 18 16 22 22 H 1.48496 * 109.47482 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47209 * 299.99738 * 20 18 16 24 24 C 1.53006 * 117.49688 * 89.68728 * 15 14 13 25 25 C 1.52999 * 117.49821 * 158.34350 * 15 14 13 26 26 C 1.38583 * 120.02673 * 5.24245 * 5 4 2 27 27 H 1.08997 * 109.47035 * 300.00133 * 1 2 3 28 28 H 1.08997 * 109.47143 * 60.00750 * 1 2 3 29 29 H 1.08998 * 109.46982 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47035 * 239.99867 * 2 1 3 31 31 H 1.08998 * 109.47474 * 299.99340 * 3 2 1 32 32 H 1.08997 * 109.47520 * 60.00164 * 3 2 1 33 33 H 1.09007 * 109.46661 * 179.97438 * 3 2 1 34 34 H 1.08001 * 119.95654 * 0.02562 * 6 5 4 35 35 H 1.08000 * 119.93606 * 180.02562 * 7 6 5 36 36 H 1.07997 * 119.98128 * 180.25351 * 8 7 6 37 37 H 0.96999 * 120.00254 * 144.43830 * 10 9 8 38 38 H 0.97003 * 119.99688 * 0.02562 * 13 11 10 39 39 H 1.09000 * 109.47128 * 64.76674 * 14 13 11 40 40 H 1.09002 * 109.47133 * 304.76829 * 14 13 11 41 41 H 0.97006 * 120.00449 * 185.00894 * 19 18 16 42 42 H 1.08991 * 117.49813 * 215.00104 * 24 15 14 43 43 H 1.09002 * 117.49711 * 0.02562 * 24 15 14 44 44 H 1.09003 * 117.49696 * 359.97438 * 25 15 14 45 45 H 1.08996 * 117.49816 * 144.97429 * 25 15 14 46 46 H 1.08002 * 120.05697 * 0.04092 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.2469 -1.2242 1.0981 6 6 3.7280 -1.9860 2.1540 7 6 4.9889 -2.5468 2.0854 8 6 5.7727 -2.3558 0.9636 9 6 5.2985 -1.5901 -0.0936 10 7 6.0941 -1.3926 -1.2277 11 6 7.4301 -1.2681 -1.1002 12 8 7.9531 -1.4134 -0.0123 13 7 8.1863 -0.9825 -2.1787 14 6 9.6385 -0.8478 -2.0402 15 6 10.2397 -0.4085 -3.3768 16 6 9.9295 -1.2982 -4.5529 17 1 9.0997 -1.0641 -5.2032 18 6 10.7085 -2.4082 -4.8018 19 7 11.7740 -2.6420 -4.0672 20 14 10.2506 -3.5800 -6.1826 21 1 10.2480 -2.8466 -7.4738 22 1 11.2412 -4.6847 -6.2434 23 1 8.8989 -4.1401 -5.9288 24 6 10.3557 1.0944 -3.6393 25 6 11.6111 0.2691 -3.3459 26 6 4.0323 -1.0259 -0.0263 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 3.1300 1.4425 0.0005 34 1 3.1157 -2.1411 3.0301 35 1 5.3607 -3.1394 2.9082 36 1 6.7562 -2.7986 0.9107 37 1 5.6842 -1.3451 -2.1055 38 1 7.7689 -0.8662 -3.0466 39 1 10.0660 -1.8067 -1.7472 40 1 9.8631 -0.1017 -1.2780 41 1 12.3623 -3.3812 -4.2874 42 1 10.2078 1.4395 -4.6625 43 1 10.0042 1.7701 -2.8595 44 1 12.0848 0.4023 -2.3733 45 1 12.2891 0.0709 -4.1760 46 1 3.6597 -0.4332 -0.8487 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455781525.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:26 Heat of formation + Delta-G solvation = -20.627874 kcal Electronic energy + Delta-G solvation = -26209.155993 eV Core-core repulsion = 22485.915870 eV Total energy + Delta-G solvation = -3723.240123 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.64146 -39.66212 -37.69193 -36.69499 -34.50627 -33.49978 -33.08802 -32.02072 -30.22961 -29.03869 -27.56777 -26.25773 -25.20710 -23.43270 -22.49926 -21.20591 -21.12454 -20.27977 -19.48154 -18.43780 -17.92771 -16.63903 -16.12457 -15.91393 -15.64012 -15.37416 -15.04867 -14.70705 -14.54910 -14.10991 -14.08338 -13.79609 -13.43278 -13.14461 -12.95863 -12.75087 -12.65065 -12.54929 -12.13702 -11.91381 -11.81502 -11.64931 -11.42617 -11.08072 -11.02029 -11.00091 -10.85864 -10.59258 -10.27001 -10.06281 -9.70545 -9.49673 -9.08969 -8.58524 -8.51299 -8.37600 -8.12918 -7.76413 -6.12741 -4.23571 1.34022 1.54341 2.93970 3.08310 3.22136 3.28808 3.29572 3.51527 3.93842 4.29476 4.46952 4.60179 4.63477 4.74228 4.90832 5.07984 5.15052 5.20754 5.22936 5.31229 5.38332 5.41471 5.44547 5.53769 5.59760 5.75958 5.81699 5.87812 5.97349 6.20263 6.28957 6.39745 6.46553 6.50717 6.54442 6.65344 6.68597 6.79641 6.98257 7.08292 7.19986 7.28998 7.36243 7.41560 7.53600 7.75009 8.28033 8.46027 8.77807 8.98964 9.44163 10.94258 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.016240 B = 0.002735 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.673847 B =10235.416079 C =10349.738778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.076 3.924 3 C -0.181 4.181 4 O -0.311 6.311 5 C 0.146 3.854 6 C -0.177 4.177 7 C -0.063 4.063 8 C -0.157 4.157 9 C 0.216 3.784 10 N -0.693 5.693 11 C 0.696 3.304 12 O -0.584 6.584 13 N -0.711 5.711 14 C 0.181 3.819 15 C 0.024 3.976 16 C -0.504 4.504 17 H 0.059 0.941 18 C 0.075 3.925 19 N -0.873 5.873 20 Si 0.891 3.109 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.276 1.276 24 C -0.211 4.211 25 C -0.141 4.141 26 C -0.245 4.245 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.126 0.874 35 H 0.130 0.870 36 H 0.144 0.856 37 H 0.405 0.595 38 H 0.400 0.600 39 H 0.066 0.934 40 H 0.040 0.960 41 H 0.263 0.737 42 H 0.077 0.923 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.087 0.913 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.982 4.059 6.761 20.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.020 3.980 3 C -0.239 4.239 4 O -0.225 6.225 5 C 0.100 3.900 6 C -0.197 4.197 7 C -0.082 4.082 8 C -0.178 4.178 9 C 0.120 3.880 10 N -0.341 5.341 11 C 0.396 3.604 12 O -0.462 6.462 13 N -0.363 5.363 14 C 0.057 3.943 15 C 0.023 3.977 16 C -0.541 4.541 17 H 0.077 0.923 18 C -0.129 4.129 19 N -0.508 5.508 20 Si 0.718 3.282 21 H -0.203 1.203 22 H -0.212 1.212 23 H -0.202 1.202 24 C -0.249 4.249 25 C -0.180 4.180 26 C -0.267 4.267 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.144 0.856 35 H 0.148 0.852 36 H 0.162 0.838 37 H 0.240 0.760 38 H 0.235 0.765 39 H 0.084 0.916 40 H 0.059 0.941 41 H 0.073 0.927 42 H 0.096 0.904 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.105 0.895 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -18.381 3.796 7.897 20.363 hybrid contribution -0.352 -0.458 -1.925 2.009 sum -18.733 3.338 5.972 19.943 Atomic orbital electron populations 1.21850 0.92581 1.03100 1.02976 1.22416 0.95247 0.92713 0.87635 1.22391 1.02522 0.95933 1.03024 1.86112 1.29462 1.68333 1.38639 1.18610 0.84200 0.93281 0.93886 1.20341 0.97500 1.02926 0.98937 1.20851 0.92479 0.97499 0.97394 1.21344 1.02034 1.00384 0.94004 1.17242 0.89497 0.93515 0.87769 1.42736 1.06115 1.76512 1.08700 1.16030 0.80390 0.78557 0.85385 1.90878 1.71712 1.57838 1.25766 1.45185 1.08768 1.73197 1.09113 1.20881 0.76124 1.00421 0.96869 1.19026 0.96495 0.88961 0.93212 1.20280 1.15294 1.08043 1.10527 0.92274 1.24985 0.94917 0.97197 0.95848 1.69971 1.12906 1.30017 1.37911 0.86692 0.78413 0.80729 0.82339 1.20278 1.21236 1.20166 1.23050 1.05684 0.96033 1.00088 1.22462 0.91391 1.03615 1.00488 1.20901 0.96674 1.08585 1.00509 0.91524 0.90584 0.91677 0.90849 0.91071 0.91478 0.91587 0.85589 0.85230 0.83821 0.75994 0.76540 0.91570 0.94139 0.92730 0.90423 0.91707 0.91752 0.89479 0.85254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.56 37.16 0.36 -0.62 16 2 C 0.08 0.66 2.85 -26.73 -0.08 0.58 16 3 C -0.18 -1.46 9.17 37.16 0.34 -1.12 16 4 O -0.31 -3.58 9.80 -19.42 -0.19 -3.77 16 5 C 0.15 1.84 6.60 -39.24 -0.26 1.58 16 6 C -0.18 -2.18 9.98 -39.40 -0.39 -2.57 16 7 C -0.06 -0.82 10.03 -39.63 -0.40 -1.21 16 8 C -0.16 -2.43 8.69 -39.37 -0.34 -2.77 16 9 C 0.22 3.20 6.29 -83.71 -0.53 2.68 16 10 N -0.69 -10.27 5.34 -14.24 -0.08 -10.35 16 11 C 0.70 13.08 8.41 -86.91 -0.73 12.35 16 12 O -0.58 -12.87 13.80 5.29 0.07 -12.79 16 13 N -0.71 -13.55 5.43 -65.22 -0.35 -13.90 16 14 C 0.18 3.99 5.56 -4.04 -0.02 3.97 16 15 C 0.02 0.55 1.60 -155.66 -0.25 0.30 16 16 C -0.50 -12.54 8.15 -34.44 -0.28 -12.82 16 17 H 0.06 1.43 7.82 -52.49 -0.41 1.02 16 18 C 0.08 1.94 5.43 -17.82 -0.10 1.85 16 19 N -0.87 -23.70 12.65 55.43 0.70 -23.00 16 20 Si 0.89 20.06 29.54 -169.99 -5.02 15.04 16 21 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 24 C -0.21 -4.34 9.93 -26.69 -0.27 -4.60 16 25 C -0.14 -3.19 9.17 -26.69 -0.24 -3.43 16 26 C -0.24 -3.09 8.16 -39.25 -0.32 -3.41 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.60 6.30 -51.93 -0.33 0.28 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.62 6.93 -51.92 -0.36 0.26 16 34 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 35 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 36 H 0.14 2.53 6.25 -52.49 -0.33 2.21 16 37 H 0.40 4.72 8.84 -40.82 -0.36 4.36 16 38 H 0.40 6.96 8.02 -40.82 -0.33 6.63 16 39 H 0.07 1.66 8.14 -51.93 -0.42 1.24 16 40 H 0.04 0.89 8.10 -51.93 -0.42 0.47 16 41 H 0.26 6.90 8.32 -40.82 -0.34 6.56 16 42 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 43 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 44 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 45 H 0.09 2.10 8.14 -51.93 -0.42 1.68 16 46 H 0.13 1.37 5.43 -52.49 -0.29 1.08 16 LS Contribution 380.99 15.07 5.74 5.74 Total: -1.00 -29.69 380.99 -9.66 -39.35 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: -7.03 Total: 12.94 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: -3.51 Total: -9.26 kcal Atomic # 7 Polarization: -47.52 SS G_CDS: 0.27 Total: -47.25 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.12 Total: -16.56 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.69 -9.66 -39.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455781525.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.725 kcal (2) G-P(sol) polarization free energy of solvation -29.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds