Wall clock time and date at job start Tue Mar 31 2020 14:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.46630 * 2 1 4 4 O 1.42902 * 109.46725 * 119.99764 * 2 1 3 5 5 C 1.35899 * 116.99365 * 155.02940 * 4 2 1 6 6 C 1.38810 * 120.01847 * 185.26080 * 5 4 2 7 7 C 1.38166 * 120.08557 * 179.97438 * 6 5 4 8 8 C 1.38171 * 120.12314 * 359.74401 * 7 6 5 9 9 C 1.38883 * 120.03907 * 0.51160 * 8 7 6 10 10 N 1.39936 * 120.04341 * 179.76758 * 9 8 7 11 11 C 1.34781 * 119.99589 * 324.43385 * 10 9 8 12 12 O 1.21580 * 120.00237 * 4.75378 * 11 10 9 13 13 N 1.34781 * 119.99744 * 184.75229 * 11 10 9 14 14 C 1.46500 * 119.99827 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.46926 * 184.76376 * 14 13 11 16 16 C 1.50694 * 115.55362 * 304.01789 * 15 14 13 17 17 H 1.08002 * 120.00339 * 95.19112 * 16 15 14 18 18 C 1.37873 * 119.99918 * 274.92519 * 16 15 14 19 19 N 1.31511 * 120.00166 * 355.50855 * 18 16 15 20 20 Si 1.86800 * 120.00107 * 175.51059 * 18 16 15 21 21 H 1.48495 * 109.47193 * 59.99447 * 20 18 16 22 22 H 1.48496 * 109.47482 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47209 * 299.99738 * 20 18 16 24 24 C 1.53006 * 117.49688 * 89.68728 * 15 14 13 25 25 C 1.52999 * 117.49821 * 158.34350 * 15 14 13 26 26 C 1.38583 * 120.02673 * 5.24245 * 5 4 2 27 27 H 1.08997 * 109.47035 * 300.00133 * 1 2 3 28 28 H 1.08997 * 109.47143 * 60.00750 * 1 2 3 29 29 H 1.08998 * 109.46982 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47035 * 239.99867 * 2 1 3 31 31 H 1.08998 * 109.47474 * 299.99340 * 3 2 1 32 32 H 1.08997 * 109.47520 * 60.00164 * 3 2 1 33 33 H 1.09007 * 109.46661 * 179.97438 * 3 2 1 34 34 H 1.08001 * 119.95654 * 0.02562 * 6 5 4 35 35 H 1.08000 * 119.93606 * 180.02562 * 7 6 5 36 36 H 1.07997 * 119.98128 * 180.25351 * 8 7 6 37 37 H 0.96999 * 120.00254 * 144.43830 * 10 9 8 38 38 H 0.97003 * 119.99688 * 0.02562 * 13 11 10 39 39 H 1.09000 * 109.47128 * 64.76674 * 14 13 11 40 40 H 1.09002 * 109.47133 * 304.76829 * 14 13 11 41 41 H 0.97006 * 120.00449 * 185.00894 * 19 18 16 42 42 H 1.08991 * 117.49813 * 215.00104 * 24 15 14 43 43 H 1.09002 * 117.49711 * 0.02562 * 24 15 14 44 44 H 1.09003 * 117.49696 * 359.97438 * 25 15 14 45 45 H 1.08996 * 117.49816 * 144.97429 * 25 15 14 46 46 H 1.08002 * 120.05697 * 0.04092 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.2469 -1.2242 1.0981 6 6 3.7280 -1.9860 2.1540 7 6 4.9889 -2.5468 2.0854 8 6 5.7727 -2.3558 0.9636 9 6 5.2985 -1.5901 -0.0936 10 7 6.0941 -1.3926 -1.2277 11 6 7.4301 -1.2681 -1.1002 12 8 7.9531 -1.4134 -0.0123 13 7 8.1863 -0.9825 -2.1787 14 6 9.6385 -0.8478 -2.0402 15 6 10.2397 -0.4085 -3.3768 16 6 9.9295 -1.2982 -4.5529 17 1 9.0997 -1.0641 -5.2032 18 6 10.7085 -2.4082 -4.8018 19 7 11.7740 -2.6420 -4.0672 20 14 10.2506 -3.5800 -6.1826 21 1 10.2480 -2.8466 -7.4738 22 1 11.2412 -4.6847 -6.2434 23 1 8.8989 -4.1401 -5.9288 24 6 10.3557 1.0944 -3.6393 25 6 11.6111 0.2691 -3.3459 26 6 4.0323 -1.0259 -0.0263 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 3.1300 1.4425 0.0005 34 1 3.1157 -2.1411 3.0301 35 1 5.3607 -3.1394 2.9082 36 1 6.7562 -2.7986 0.9107 37 1 5.6842 -1.3451 -2.1055 38 1 7.7689 -0.8662 -3.0466 39 1 10.0660 -1.8067 -1.7472 40 1 9.8631 -0.1017 -1.2780 41 1 12.3623 -3.3812 -4.2874 42 1 10.2078 1.4395 -4.6625 43 1 10.0042 1.7701 -2.8595 44 1 12.0848 0.4023 -2.3733 45 1 12.2891 0.0709 -4.1760 46 1 3.6597 -0.4332 -0.8487 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455781525.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:24 Heat of formation + Delta-G solvation = -37.604897 kcal Electronic energy + Delta-G solvation = -26209.892172 eV Core-core repulsion = 22485.915870 eV Total energy + Delta-G solvation = -3723.976302 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -41.79893 -40.83770 -38.95202 -38.24211 -35.74407 -35.03739 -33.98594 -33.88747 -31.27680 -30.15096 -28.14838 -27.98742 -27.02504 -24.34367 -23.70640 -22.90502 -22.09629 -21.55695 -21.20766 -19.49426 -19.35854 -18.13952 -17.34976 -17.17452 -16.68412 -16.59941 -16.43061 -16.26800 -15.84785 -15.70984 -15.14770 -15.01396 -14.55680 -14.47261 -14.20607 -13.92930 -13.61116 -13.49240 -13.33833 -13.13040 -12.97275 -12.93556 -12.79655 -12.74554 -12.38995 -12.27456 -12.01260 -11.85825 -11.61952 -11.45664 -11.28857 -11.03303 -10.92846 -10.44422 -10.13005 -9.88693 -9.48583 -8.89914 -8.08956 -6.23859 0.29374 0.48307 1.44019 1.45553 1.51583 1.62141 2.07886 2.25911 2.42407 2.84385 3.17323 3.23488 3.56802 3.85027 3.89585 3.99333 4.14269 4.18670 4.23836 4.29395 4.43050 4.52798 4.54650 4.62950 4.67426 4.71612 4.72623 4.82910 4.90234 4.95129 4.99251 5.02669 5.16683 5.25078 5.29182 5.30922 5.34245 5.48150 5.49900 5.56629 5.62939 5.71076 5.77810 5.89829 6.04871 6.36604 6.49433 6.83889 7.06995 7.46264 7.52240 8.97708 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.016240 B = 0.002735 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.673847 B =10235.416079 C =10349.738778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.066 3.934 3 C -0.179 4.179 4 O -0.318 6.318 5 C 0.145 3.855 6 C -0.176 4.176 7 C -0.061 4.061 8 C -0.183 4.183 9 C 0.195 3.805 10 N -0.676 5.676 11 C 0.696 3.304 12 O -0.620 6.620 13 N -0.706 5.706 14 C 0.198 3.802 15 C 0.004 3.996 16 C -0.506 4.506 17 H 0.067 0.933 18 C 0.026 3.974 19 N -0.907 5.907 20 Si 0.949 3.051 21 H -0.270 1.270 22 H -0.294 1.294 23 H -0.270 1.270 24 C -0.179 4.179 25 C -0.153 4.153 26 C -0.236 4.236 27 H 0.065 0.935 28 H 0.097 0.903 29 H 0.063 0.937 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.065 0.935 33 H 0.049 0.951 34 H 0.148 0.852 35 H 0.150 0.850 36 H 0.114 0.886 37 H 0.421 0.579 38 H 0.410 0.590 39 H 0.026 0.974 40 H 0.040 0.960 41 H 0.259 0.741 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.069 0.931 45 H 0.065 0.935 46 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.917 5.072 6.152 23.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.010 3.990 3 C -0.236 4.236 4 O -0.233 6.233 5 C 0.098 3.902 6 C -0.196 4.196 7 C -0.080 4.080 8 C -0.204 4.204 9 C 0.099 3.901 10 N -0.325 5.325 11 C 0.397 3.603 12 O -0.500 6.500 13 N -0.359 5.359 14 C 0.073 3.927 15 C 0.003 3.997 16 C -0.543 4.543 17 H 0.085 0.915 18 C -0.175 4.175 19 N -0.544 5.544 20 Si 0.775 3.225 21 H -0.195 1.195 22 H -0.220 1.220 23 H -0.195 1.195 24 C -0.216 4.216 25 C -0.192 4.192 26 C -0.257 4.257 27 H 0.084 0.916 28 H 0.115 0.885 29 H 0.082 0.918 30 H 0.097 0.903 31 H 0.110 0.890 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.165 0.835 35 H 0.168 0.832 36 H 0.132 0.868 37 H 0.259 0.741 38 H 0.246 0.754 39 H 0.045 0.955 40 H 0.058 0.942 41 H 0.068 0.932 42 H 0.103 0.897 43 H 0.105 0.895 44 H 0.087 0.913 45 H 0.084 0.916 46 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -21.387 4.823 7.256 23.094 hybrid contribution 0.447 -0.726 -1.669 1.875 sum -20.940 4.097 5.587 22.056 Atomic orbital electron populations 1.21872 0.90879 1.03393 1.04023 1.22733 0.96588 0.92758 0.86874 1.22384 1.01447 0.95775 1.04033 1.86127 1.28618 1.68307 1.40201 1.18772 0.84700 0.92935 0.93760 1.20628 0.97251 1.02079 0.99596 1.21048 0.92478 0.97394 0.97061 1.21271 1.01498 1.01891 0.95752 1.17409 0.90370 0.94634 0.87672 1.42440 1.04597 1.75622 1.09827 1.16121 0.81504 0.78145 0.84579 1.90860 1.72826 1.59224 1.27112 1.44939 1.07651 1.73540 1.09752 1.20460 0.77664 0.98172 0.96427 1.19063 0.97028 0.90594 0.92980 1.20618 1.14938 1.08011 1.10782 0.91536 1.25696 0.94971 0.98786 0.98035 1.70105 1.14058 1.30620 1.39604 0.85756 0.77962 0.78660 0.80084 1.19466 1.22026 1.19521 1.23031 1.02859 0.94552 1.01168 1.22384 0.91559 1.05166 1.00048 1.21009 0.95497 1.07983 1.01227 0.91553 0.88481 0.91774 0.90256 0.88983 0.91634 0.93156 0.83474 0.83191 0.86755 0.74085 0.75414 0.95536 0.94177 0.93227 0.89664 0.89528 0.91262 0.91619 0.83174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.56 71.98 0.69 -0.80 16 2 C 0.07 0.97 2.85 30.60 0.09 1.05 16 3 C -0.18 -2.44 9.17 71.98 0.66 -1.78 16 4 O -0.32 -6.58 9.80 -92.41 -0.91 -7.49 16 5 C 0.14 3.36 6.60 22.49 0.15 3.51 16 6 C -0.18 -4.01 9.98 22.39 0.22 -3.79 16 7 C -0.06 -1.53 10.03 22.24 0.22 -1.31 16 8 C -0.18 -5.76 8.69 22.41 0.19 -5.56 16 9 C 0.19 5.67 6.29 38.13 0.24 5.91 16 10 N -0.68 -19.65 5.34 -317.23 -1.69 -21.34 16 11 C 0.70 26.37 8.41 179.05 1.51 27.88 16 12 O -0.62 -28.17 13.80 -3.97 -0.05 -28.22 16 13 N -0.71 -26.83 5.43 -478.53 -2.60 -29.42 16 14 C 0.20 8.88 5.56 86.38 0.48 9.36 16 15 C 0.00 0.19 1.60 -52.93 -0.08 0.10 16 16 C -0.51 -24.94 8.15 25.60 0.21 -24.73 16 17 H 0.07 3.11 7.82 -2.91 -0.02 3.09 16 18 C 0.03 1.35 5.43 84.65 0.46 1.81 16 19 N -0.91 -50.42 12.65 21.45 0.27 -50.15 16 20 Si 0.95 41.16 29.54 68.60 2.03 43.19 16 21 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 22 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 23 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 24 C -0.18 -7.04 9.93 30.62 0.30 -6.74 16 25 C -0.15 -6.93 9.17 30.62 0.28 -6.65 16 26 C -0.24 -5.56 8.16 22.48 0.18 -5.37 16 27 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.08 1.07 6.30 -2.39 -0.02 1.06 16 31 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.05 0.85 6.93 -2.38 -0.02 0.83 16 34 H 0.15 2.69 8.06 -2.91 -0.02 2.66 16 35 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 36 H 0.11 4.27 6.25 -2.91 -0.02 4.25 16 37 H 0.42 9.19 8.84 -92.71 -0.82 8.37 16 38 H 0.41 13.82 8.02 -92.71 -0.74 13.08 16 39 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.04 1.78 8.10 -2.39 -0.02 1.76 16 41 H 0.26 13.98 8.32 -92.70 -0.77 13.20 16 42 H 0.08 3.23 8.14 -2.39 -0.02 3.22 16 43 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 44 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 45 H 0.07 3.23 8.14 -2.39 -0.02 3.21 16 46 H 0.15 2.80 5.43 -2.91 -0.02 2.79 16 Total: -1.00 -64.85 380.99 2.29 -62.56 By element: Atomic # 1 Polarization: 38.55 SS G_CDS: -0.56 Total: 37.99 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: 5.80 Total: -7.11 kcal Atomic # 7 Polarization: -96.90 SS G_CDS: -4.02 Total: -100.92 kcal Atomic # 8 Polarization: -34.75 SS G_CDS: -0.96 Total: -35.71 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.19 kcal Total: -64.85 2.29 -62.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455781525.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.955 kcal (2) G-P(sol) polarization free energy of solvation -64.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds