Wall clock time and date at job start Tue Mar 31 2020 14:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50705 * 109.47155 * 2 1 4 4 O 1.21289 * 119.99783 * 359.97438 * 3 2 1 5 5 N 1.34768 * 119.99935 * 180.02562 * 3 2 1 6 6 C 1.39962 * 120.00214 * 184.62374 * 5 3 2 7 7 C 1.38986 * 120.00396 * 212.20939 * 6 5 3 8 8 C 1.38206 * 120.22241 * 180.02562 * 7 6 5 9 9 C 1.38020 * 120.22519 * 359.67925 * 8 7 6 10 10 C 1.39576 * 119.99383 * 0.62157 * 9 8 7 11 11 C 1.47856 * 120.11182 * 179.67733 * 10 9 8 12 12 O 1.21556 * 119.99932 * 179.72679 * 11 10 9 13 13 N 1.34779 * 120.00252 * 359.72576 * 11 10 9 14 14 C 1.46491 * 120.00080 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.47013 * 179.97438 * 14 13 11 16 16 C 1.53000 * 109.47121 * 299.99895 * 15 14 13 17 17 C 1.52998 * 109.47244 * 59.99977 * 15 14 13 18 18 C 1.50706 * 109.47288 * 180.02562 * 15 14 13 19 19 H 1.07999 * 120.00046 * 1.60116 * 18 15 14 20 20 C 1.37875 * 119.99820 * 181.61032 * 18 15 14 21 21 N 1.31513 * 119.99501 * 193.74633 * 20 18 15 22 22 Si 1.86798 * 120.00423 * 13.74575 * 20 18 15 23 23 H 1.48494 * 109.47035 * 84.56995 * 22 20 18 24 24 H 1.48495 * 109.46950 * 204.57214 * 22 20 18 25 25 H 1.48501 * 109.46784 * 324.57071 * 22 20 18 26 26 C 1.38602 * 119.99522 * 32.23068 * 6 5 3 27 27 H 1.09003 * 109.47281 * 300.00088 * 1 2 3 28 28 H 1.09004 * 109.46715 * 60.00469 * 1 2 3 29 29 H 1.09008 * 109.47108 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47541 * 239.99487 * 2 1 3 31 31 H 1.09005 * 109.47155 * 119.99834 * 2 1 3 32 32 H 0.97005 * 120.00261 * 4.62034 * 5 3 2 33 33 H 1.08004 * 119.88761 * 0.02562 * 7 6 5 34 34 H 1.08007 * 119.88331 * 179.97438 * 8 7 6 35 35 H 1.08005 * 120.00597 * 180.32554 * 9 8 7 36 36 H 0.96997 * 119.99604 * 359.97438 * 13 11 10 37 37 H 1.08997 * 109.47640 * 60.00096 * 14 13 11 38 38 H 1.08997 * 109.47402 * 299.99741 * 14 13 11 39 39 H 1.09002 * 109.47500 * 68.89283 * 16 15 14 40 40 H 1.09003 * 109.47428 * 188.89710 * 16 15 14 41 41 H 1.09005 * 109.47071 * 308.89468 * 16 15 14 42 42 H 1.08997 * 109.47109 * 60.00292 * 17 15 14 43 43 H 1.08998 * 109.47055 * 180.02562 * 17 15 14 44 44 H 1.09005 * 109.47079 * 300.00022 * 17 15 14 45 45 H 0.97002 * 119.99860 * 179.97438 * 21 20 18 46 46 H 1.08002 * 120.10771 * 0.02719 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2441 2.3427 -0.0005 5 7 3.3573 1.6671 -0.0005 6 6 3.8247 2.9828 0.0972 7 6 5.0069 3.3491 -0.5352 8 6 5.4728 4.6469 -0.4413 9 6 4.7639 5.5894 0.2757 10 6 3.5789 5.2301 0.9197 11 6 2.8211 6.2359 1.6943 12 8 1.7868 5.9219 2.2503 13 7 3.2773 7.5010 1.7841 14 6 2.5268 8.4975 2.5521 15 6 3.2563 9.8411 2.4944 16 6 4.6570 9.6871 3.0903 17 6 3.3688 10.2982 1.0386 18 6 2.4845 10.8662 3.2850 19 1 1.5794 10.5810 3.8006 20 6 2.9340 12.1680 3.3499 21 7 2.4307 12.9936 4.2413 22 14 4.2575 12.7591 2.1717 23 1 3.6302 13.1800 0.8933 24 1 4.9769 13.9107 2.7729 25 1 5.2177 11.6563 1.9124 26 6 3.1088 3.9202 0.8250 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.9872 0.9325 -0.0686 33 1 5.5632 2.6172 -1.1020 34 1 6.3923 4.9255 -0.9346 35 1 5.1286 6.6039 0.3424 36 1 4.1029 7.7515 1.3408 37 1 2.4470 8.1722 3.5894 38 1 1.5288 8.6070 2.1279 39 1 5.2663 9.0686 2.4313 40 1 5.1174 10.6695 3.1950 41 1 4.5852 9.2133 4.0694 42 1 2.3710 10.4080 0.6141 43 1 3.8889 11.2552 0.9975 44 1 3.9273 9.5567 0.4671 45 1 2.7471 13.9094 4.2873 46 1 2.1903 3.6371 1.3178 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457986382.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:46 Heat of formation + Delta-G solvation = -35.753390 kcal Electronic energy + Delta-G solvation = -26335.822999 eV Core-core repulsion = 22611.926985 eV Total energy + Delta-G solvation = -3723.896014 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.90970 -39.66722 -38.21930 -36.65628 -35.08362 -33.40581 -33.17042 -31.62976 -31.09183 -29.80354 -26.43099 -26.20671 -25.16058 -24.97903 -23.45946 -22.57354 -20.53339 -20.31806 -19.28069 -18.20393 -17.54807 -16.49699 -16.28755 -16.09464 -15.94293 -15.44241 -15.12076 -14.86673 -14.58022 -14.39088 -13.93565 -13.71814 -13.45531 -13.29766 -12.91894 -12.76148 -12.61893 -12.59568 -12.21303 -12.14472 -12.07631 -12.03798 -11.72279 -11.55185 -11.29671 -10.70804 -10.42944 -10.31042 -10.16498 -10.09601 -10.05863 -9.60442 -9.11652 -9.10486 -8.67738 -8.52620 -8.44416 -8.37852 -6.13408 -4.10697 0.73847 1.13508 2.25297 2.65006 3.04495 3.24638 3.31529 3.39224 3.58755 3.88870 4.24918 4.36405 4.60512 4.66043 4.67325 4.70056 4.97127 5.02481 5.07431 5.17211 5.28979 5.30734 5.41752 5.55956 5.68623 5.78631 5.89370 6.00658 6.04388 6.07507 6.08659 6.18314 6.26920 6.36189 6.50065 6.53382 6.63944 6.70708 6.73845 6.80394 6.97412 7.00305 7.22412 7.43917 7.72962 7.78535 7.93670 8.45899 8.59961 8.92265 9.50270 10.99714 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.024797 B = 0.002668 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.877360 B =10491.886362 C =11297.280526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.141 4.141 3 C 0.504 3.496 4 O -0.508 6.508 5 N -0.676 5.676 6 C 0.134 3.866 7 C -0.128 4.128 8 C -0.106 4.106 9 C -0.103 4.103 10 C -0.105 4.105 11 C 0.547 3.453 12 O -0.538 6.538 13 N -0.715 5.715 14 C 0.141 3.859 15 C 0.028 3.972 16 C -0.143 4.143 17 C -0.148 4.148 18 C -0.512 4.512 19 H 0.077 0.923 20 C 0.075 3.925 21 N -0.891 5.891 22 Si 0.886 3.114 23 H -0.286 1.286 24 H -0.305 1.305 25 H -0.249 1.249 26 C -0.066 4.066 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.411 0.589 33 H 0.128 0.872 34 H 0.132 0.868 35 H 0.129 0.871 36 H 0.395 0.605 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.021 0.979 40 H 0.057 0.943 41 H 0.048 0.952 42 H 0.054 0.946 43 H 0.042 0.958 44 H 0.029 0.971 45 H 0.264 0.736 46 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.021 -26.308 -11.884 29.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.181 4.181 3 C 0.292 3.708 4 O -0.381 6.381 5 N -0.322 5.322 6 C 0.040 3.960 7 C -0.149 4.149 8 C -0.125 4.125 9 C -0.123 4.123 10 C -0.109 4.109 11 C 0.333 3.667 12 O -0.416 6.416 13 N -0.367 5.367 14 C 0.019 3.981 15 C 0.027 3.973 16 C -0.200 4.200 17 C -0.205 4.205 18 C -0.550 4.550 19 H 0.095 0.905 20 C -0.128 4.128 21 N -0.528 5.528 22 Si 0.719 3.281 23 H -0.214 1.214 24 H -0.234 1.234 25 H -0.175 1.175 26 C -0.087 4.087 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.113 0.887 31 H 0.115 0.885 32 H 0.246 0.754 33 H 0.146 0.854 34 H 0.150 0.850 35 H 0.147 0.853 36 H 0.231 0.769 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.040 0.960 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.060 0.940 44 H 0.048 0.952 45 H 0.074 0.926 46 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 6.614 -25.701 -11.360 28.868 hybrid contribution 1.525 0.305 -0.956 1.825 sum 8.138 -25.397 -12.316 29.375 Atomic orbital electron populations 1.21566 0.92546 1.01872 1.03831 1.21638 0.99116 0.92742 1.04557 1.21101 0.81560 0.92559 0.75569 1.90813 1.54850 1.46212 1.46208 1.43580 1.08023 1.06852 1.73766 1.17619 0.95293 0.85023 0.98020 1.20997 0.96631 0.97244 1.00031 1.20865 1.00038 0.92334 0.99246 1.21366 0.94085 0.99951 0.96892 1.20008 0.96097 0.94457 1.00360 1.18202 0.85037 0.82473 0.80955 1.90774 1.23902 1.80003 1.46938 1.46229 1.27588 1.09601 1.53253 1.21554 0.94855 0.86769 0.94915 1.18732 0.93380 0.92469 0.92744 1.22307 0.97443 1.00708 0.99546 1.22369 1.00736 0.99075 0.98345 1.20715 1.10917 0.92495 1.30864 0.90488 1.24977 0.96112 0.96828 0.94864 1.69951 1.43882 1.06267 1.32681 0.87287 0.82844 0.77224 0.80786 1.21356 1.23427 1.17518 1.21279 1.00249 0.91394 0.95815 0.91605 0.91785 0.91815 0.88695 0.88497 0.75358 0.85445 0.84981 0.85346 0.76862 0.91679 0.91759 0.96009 0.92453 0.93309 0.92677 0.93996 0.95226 0.92568 0.83298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 9.20 37.16 0.34 -0.63 16 2 C -0.14 -0.77 6.42 -27.88 -0.18 -0.95 16 3 C 0.50 4.95 7.58 -10.99 -0.08 4.87 16 4 O -0.51 -7.61 13.57 5.55 0.08 -7.54 16 5 N -0.68 -5.41 5.34 -9.89 -0.05 -5.46 16 6 C 0.13 1.47 6.30 -83.73 -0.53 0.95 16 7 C -0.13 -1.11 9.95 -39.32 -0.39 -1.50 16 8 C -0.11 -0.97 10.02 -39.67 -0.40 -1.36 16 9 C -0.10 -1.20 9.54 -39.16 -0.37 -1.57 16 10 C -0.11 -1.58 5.87 -104.99 -0.62 -2.19 16 11 C 0.55 10.07 7.77 -12.32 -0.10 9.97 16 12 O -0.54 -11.98 16.35 5.32 0.09 -11.89 16 13 N -0.72 -12.54 4.95 -61.25 -0.30 -12.85 16 14 C 0.14 2.94 4.49 -4.05 -0.02 2.92 16 15 C 0.03 0.62 0.50 -155.66 -0.08 0.54 16 16 C -0.14 -2.92 7.55 37.16 0.28 -2.64 16 17 C -0.15 -3.05 7.52 37.16 0.28 -2.77 16 18 C -0.51 -13.91 8.62 -34.44 -0.30 -14.21 16 19 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16 20 C 0.07 2.09 5.33 -17.82 -0.09 2.00 16 21 N -0.89 -26.84 13.96 55.43 0.77 -26.06 16 22 Si 0.89 21.20 22.79 -169.99 -3.87 17.33 16 23 H -0.29 -6.83 7.10 56.52 0.40 -6.43 16 24 H -0.31 -7.48 7.11 56.52 0.40 -7.08 16 25 H -0.25 -5.39 4.64 56.52 0.26 -5.13 16 26 C -0.07 -0.98 8.21 -38.98 -0.32 -1.30 16 27 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 28 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 29 H 0.06 0.30 8.14 -51.92 -0.42 -0.12 16 30 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.41 1.55 8.81 -40.82 -0.36 1.19 16 33 H 0.13 0.69 8.06 -52.48 -0.42 0.27 16 34 H 0.13 0.83 8.06 -52.48 -0.42 0.40 16 35 H 0.13 1.29 6.40 -52.48 -0.34 0.96 16 36 H 0.40 5.94 4.28 -40.82 -0.17 5.77 16 37 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 38 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 39 H 0.02 0.36 7.12 -51.93 -0.37 -0.01 16 40 H 0.06 1.24 4.30 -51.93 -0.22 1.02 16 41 H 0.05 0.99 8.12 -51.93 -0.42 0.57 16 42 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.04 0.90 2.23 -51.93 -0.12 0.79 16 44 H 0.03 0.50 6.86 -51.93 -0.36 0.14 16 45 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 46 H 0.15 2.58 5.90 -52.49 -0.31 2.27 16 LS Contribution 362.18 15.07 5.46 5.46 Total: -1.00 -35.49 362.18 -6.99 -42.48 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -6.58 Total: 6.41 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: -2.57 Total: -7.88 kcal Atomic # 7 Polarization: -44.79 SS G_CDS: 0.42 Total: -44.38 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: 0.16 Total: -19.43 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -3.87 Total: 17.33 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.49 -6.99 -42.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457986382.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.731 kcal (2) G-P(sol) polarization free energy of solvation -35.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds