Wall clock time and date at job start Tue Mar 31 2020 14:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50705 * 109.47155 * 2 1 4 4 O 1.21289 * 119.99783 * 359.97438 * 3 2 1 5 5 N 1.34768 * 119.99935 * 180.02562 * 3 2 1 6 6 C 1.39962 * 120.00214 * 184.62374 * 5 3 2 7 7 C 1.38986 * 120.00396 * 212.20939 * 6 5 3 8 8 C 1.38206 * 120.22241 * 180.02562 * 7 6 5 9 9 C 1.38020 * 120.22519 * 359.67925 * 8 7 6 10 10 C 1.39576 * 119.99383 * 0.62157 * 9 8 7 11 11 C 1.47856 * 120.11182 * 179.67733 * 10 9 8 12 12 O 1.21556 * 119.99932 * 179.72679 * 11 10 9 13 13 N 1.34779 * 120.00252 * 359.72576 * 11 10 9 14 14 C 1.46491 * 120.00080 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.47013 * 179.97438 * 14 13 11 16 16 C 1.53000 * 109.47121 * 299.99895 * 15 14 13 17 17 C 1.52998 * 109.47244 * 59.99977 * 15 14 13 18 18 C 1.50706 * 109.47288 * 180.02562 * 15 14 13 19 19 H 1.07999 * 120.00046 * 1.60116 * 18 15 14 20 20 C 1.37875 * 119.99820 * 181.61032 * 18 15 14 21 21 N 1.31513 * 119.99501 * 193.74633 * 20 18 15 22 22 Si 1.86798 * 120.00423 * 13.74575 * 20 18 15 23 23 H 1.48494 * 109.47035 * 84.56995 * 22 20 18 24 24 H 1.48495 * 109.46950 * 204.57214 * 22 20 18 25 25 H 1.48501 * 109.46784 * 324.57071 * 22 20 18 26 26 C 1.38602 * 119.99522 * 32.23068 * 6 5 3 27 27 H 1.09003 * 109.47281 * 300.00088 * 1 2 3 28 28 H 1.09004 * 109.46715 * 60.00469 * 1 2 3 29 29 H 1.09008 * 109.47108 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47541 * 239.99487 * 2 1 3 31 31 H 1.09005 * 109.47155 * 119.99834 * 2 1 3 32 32 H 0.97005 * 120.00261 * 4.62034 * 5 3 2 33 33 H 1.08004 * 119.88761 * 0.02562 * 7 6 5 34 34 H 1.08007 * 119.88331 * 179.97438 * 8 7 6 35 35 H 1.08005 * 120.00597 * 180.32554 * 9 8 7 36 36 H 0.96997 * 119.99604 * 359.97438 * 13 11 10 37 37 H 1.08997 * 109.47640 * 60.00096 * 14 13 11 38 38 H 1.08997 * 109.47402 * 299.99741 * 14 13 11 39 39 H 1.09002 * 109.47500 * 68.89283 * 16 15 14 40 40 H 1.09003 * 109.47428 * 188.89710 * 16 15 14 41 41 H 1.09005 * 109.47071 * 308.89468 * 16 15 14 42 42 H 1.08997 * 109.47109 * 60.00292 * 17 15 14 43 43 H 1.08998 * 109.47055 * 180.02562 * 17 15 14 44 44 H 1.09005 * 109.47079 * 300.00022 * 17 15 14 45 45 H 0.97002 * 119.99860 * 179.97438 * 21 20 18 46 46 H 1.08002 * 120.10771 * 0.02719 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2441 2.3427 -0.0005 5 7 3.3573 1.6671 -0.0005 6 6 3.8247 2.9828 0.0972 7 6 5.0069 3.3491 -0.5352 8 6 5.4728 4.6469 -0.4413 9 6 4.7639 5.5894 0.2757 10 6 3.5789 5.2301 0.9197 11 6 2.8211 6.2359 1.6943 12 8 1.7868 5.9219 2.2503 13 7 3.2773 7.5010 1.7841 14 6 2.5268 8.4975 2.5521 15 6 3.2563 9.8411 2.4944 16 6 4.6570 9.6871 3.0903 17 6 3.3688 10.2982 1.0386 18 6 2.4845 10.8662 3.2850 19 1 1.5794 10.5810 3.8006 20 6 2.9340 12.1680 3.3499 21 7 2.4307 12.9936 4.2413 22 14 4.2575 12.7591 2.1717 23 1 3.6302 13.1800 0.8933 24 1 4.9769 13.9107 2.7729 25 1 5.2177 11.6563 1.9124 26 6 3.1088 3.9202 0.8250 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.9872 0.9325 -0.0686 33 1 5.5632 2.6172 -1.1020 34 1 6.3923 4.9255 -0.9346 35 1 5.1286 6.6039 0.3424 36 1 4.1029 7.7515 1.3408 37 1 2.4470 8.1722 3.5894 38 1 1.5288 8.6070 2.1279 39 1 5.2663 9.0686 2.4313 40 1 5.1174 10.6695 3.1950 41 1 4.5852 9.2133 4.0694 42 1 2.3710 10.4080 0.6141 43 1 3.8889 11.2552 0.9975 44 1 3.9273 9.5567 0.4671 45 1 2.7471 13.9094 4.2873 46 1 2.1903 3.6371 1.3178 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457986382.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:45 Heat of formation + Delta-G solvation = -62.944978 kcal Electronic energy + Delta-G solvation = -26337.002115 eV Core-core repulsion = 22611.926985 eV Total energy + Delta-G solvation = -3725.075130 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.78240 -40.93402 -39.28445 -38.35402 -35.94642 -35.06690 -33.83792 -33.49347 -32.11807 -30.65899 -28.06992 -27.77442 -27.01094 -25.81501 -24.67892 -23.33898 -21.61923 -21.27267 -21.00661 -19.41561 -18.29955 -18.09874 -17.44692 -17.30385 -16.94124 -16.72073 -16.62717 -16.40604 -15.54179 -15.32332 -15.05742 -14.96414 -14.73759 -14.70880 -14.37560 -14.29562 -14.01977 -13.76273 -13.66477 -13.20825 -12.98884 -12.85145 -12.76930 -12.57567 -12.40710 -12.18961 -12.05448 -11.96814 -11.79230 -11.57264 -11.17114 -10.99867 -10.91444 -10.63539 -10.40120 -10.21156 -9.89582 -9.20859 -8.30881 -6.33467 -0.19826 0.27240 1.35937 1.38172 1.50212 1.51413 1.87796 1.98605 2.21497 2.34490 2.86793 3.04850 3.60257 3.72336 3.92189 4.02809 4.08462 4.19169 4.20157 4.24570 4.27686 4.37996 4.43778 4.49739 4.69140 4.74543 4.78338 4.83622 4.88867 4.92323 4.95718 5.02526 5.02725 5.12887 5.21325 5.27809 5.31779 5.34826 5.38918 5.42549 5.48602 5.69611 5.77610 5.93454 6.28246 6.40658 6.54568 6.70682 7.14739 7.18477 7.31209 8.86510 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.024797 B = 0.002668 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.877360 B =10491.886362 C =11297.280526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.130 4.130 3 C 0.495 3.505 4 O -0.571 6.571 5 N -0.660 5.660 6 C 0.127 3.873 7 C -0.105 4.105 8 C -0.095 4.095 9 C -0.101 4.101 10 C -0.133 4.133 11 C 0.544 3.456 12 O -0.593 6.593 13 N -0.700 5.700 14 C 0.155 3.845 15 C 0.029 3.971 16 C -0.142 4.142 17 C -0.149 4.149 18 C -0.520 4.520 19 H 0.024 0.976 20 C 0.015 3.985 21 N -0.947 5.947 22 Si 0.947 3.053 23 H -0.281 1.281 24 H -0.314 1.314 25 H -0.199 1.199 26 C -0.096 4.096 27 H 0.037 0.963 28 H 0.044 0.956 29 H 0.091 0.909 30 H 0.132 0.868 31 H 0.124 0.876 32 H 0.434 0.566 33 H 0.175 0.825 34 H 0.177 0.823 35 H 0.148 0.852 36 H 0.412 0.588 37 H 0.041 0.959 38 H 0.040 0.960 39 H 0.068 0.932 40 H 0.049 0.951 41 H 0.040 0.960 42 H 0.044 0.956 43 H 0.039 0.961 44 H 0.075 0.925 45 H 0.265 0.735 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.242 -29.165 -15.673 35.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.169 4.169 3 C 0.286 3.714 4 O -0.449 6.449 5 N -0.307 5.307 6 C 0.033 3.967 7 C -0.125 4.125 8 C -0.113 4.113 9 C -0.120 4.120 10 C -0.137 4.137 11 C 0.333 3.667 12 O -0.475 6.475 13 N -0.352 5.352 14 C 0.032 3.968 15 C 0.027 3.973 16 C -0.199 4.199 17 C -0.205 4.205 18 C -0.558 4.558 19 H 0.042 0.958 20 C -0.183 4.183 21 N -0.586 5.586 22 Si 0.776 3.224 23 H -0.209 1.209 24 H -0.243 1.243 25 H -0.123 1.123 26 C -0.117 4.117 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.110 0.890 30 H 0.150 0.850 31 H 0.142 0.858 32 H 0.275 0.725 33 H 0.192 0.808 34 H 0.194 0.806 35 H 0.166 0.834 36 H 0.252 0.748 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.087 0.913 40 H 0.068 0.932 41 H 0.059 0.941 42 H 0.063 0.937 43 H 0.058 0.942 44 H 0.094 0.906 45 H 0.074 0.926 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 11.909 -28.629 -15.179 34.523 hybrid contribution -0.194 1.057 0.267 1.108 sum 11.714 -27.572 -14.912 33.463 Atomic orbital electron populations 1.21587 0.94146 1.02837 1.01552 1.21713 0.97623 0.90044 1.07530 1.22009 0.81653 0.93742 0.74033 1.90806 1.56515 1.48418 1.49117 1.43494 1.08024 1.06645 1.72576 1.17773 0.95827 0.85543 0.97561 1.21534 0.94862 0.98223 0.97926 1.21395 1.00681 0.91636 0.97566 1.21615 0.92542 1.01647 0.96241 1.19719 0.97963 0.93448 1.02548 1.18904 0.84522 0.83013 0.80277 1.90741 1.26526 1.80896 1.49326 1.45907 1.27753 1.08761 1.52810 1.21101 0.94302 0.87449 0.93985 1.18657 0.93908 0.91041 0.93658 1.22233 0.96302 1.01135 1.00228 1.22314 1.01132 1.00165 0.96924 1.21008 1.09757 0.94266 1.30814 0.95752 1.25917 0.99169 0.96741 0.96449 1.70119 1.46523 1.06765 1.35191 0.86293 0.80650 0.77607 0.77873 1.20874 1.24305 1.12273 1.21099 0.99951 0.92802 0.97884 0.94420 0.93681 0.89047 0.84972 0.85775 0.72543 0.80786 0.80597 0.83427 0.74845 0.94088 0.94187 0.91281 0.93177 0.94128 0.93665 0.94236 0.90621 0.92610 0.87551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.20 71.98 0.66 -1.31 16 2 C -0.13 -1.14 6.42 29.85 0.19 -0.95 16 3 C 0.50 9.50 7.58 87.66 0.66 10.16 16 4 O -0.57 -18.41 13.57 -3.06 -0.04 -18.45 16 5 N -0.66 -8.99 5.34 -303.59 -1.62 -10.61 16 6 C 0.13 2.52 6.30 38.11 0.24 2.76 16 7 C -0.11 -1.25 9.95 22.44 0.22 -1.03 16 8 C -0.09 -1.15 10.02 22.21 0.22 -0.93 16 9 C -0.10 -1.95 9.54 22.54 0.21 -1.74 16 10 C -0.13 -3.94 5.87 -20.11 -0.12 -4.06 16 11 C 0.54 20.77 7.77 86.79 0.67 21.45 16 12 O -0.59 -28.75 16.35 -3.89 -0.06 -28.82 16 13 N -0.70 -24.22 4.95 -465.98 -2.31 -26.53 16 14 C 0.16 6.73 4.49 86.38 0.39 7.12 16 15 C 0.03 1.25 0.50 -52.93 -0.03 1.23 16 16 C -0.14 -5.43 7.55 71.98 0.54 -4.89 16 17 C -0.15 -5.70 7.52 71.98 0.54 -5.15 16 18 C -0.52 -29.58 8.62 25.60 0.22 -29.36 16 19 H 0.02 1.58 7.99 -2.91 -0.02 1.56 16 20 C 0.01 0.84 5.33 84.65 0.45 1.29 16 21 N -0.95 -59.74 13.96 21.45 0.30 -59.44 16 22 Si 0.95 42.89 22.79 68.60 1.56 44.45 16 23 H -0.28 -12.52 7.10 99.48 0.71 -11.81 16 24 H -0.31 -14.58 7.11 99.48 0.71 -13.88 16 25 H -0.20 -7.47 4.64 99.48 0.46 -7.00 16 26 C -0.10 -2.91 8.21 22.66 0.19 -2.72 16 27 H 0.04 0.71 8.10 -2.39 -0.02 0.69 16 28 H 0.04 0.77 8.10 -2.38 -0.02 0.75 16 29 H 0.09 0.71 8.14 -2.38 -0.02 0.70 16 30 H 0.13 0.24 8.14 -2.39 -0.02 0.22 16 31 H 0.12 0.47 8.14 -2.38 -0.02 0.45 16 32 H 0.43 1.45 8.81 -92.70 -0.82 0.63 16 33 H 0.17 0.51 8.06 -2.91 -0.02 0.49 16 34 H 0.18 0.73 8.06 -2.91 -0.02 0.71 16 35 H 0.15 2.18 6.40 -2.91 -0.02 2.16 16 36 H 0.41 11.03 4.28 -92.71 -0.40 10.63 16 37 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.07 1.99 7.12 -2.39 -0.02 1.98 16 40 H 0.05 2.00 4.30 -2.39 -0.01 1.99 16 41 H 0.04 1.60 8.12 -2.38 -0.02 1.58 16 42 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.04 1.55 2.23 -2.39 -0.01 1.54 16 44 H 0.08 2.20 6.86 -2.38 -0.02 2.18 16 45 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 46 H 0.11 4.12 5.90 -2.91 -0.02 4.10 16 Total: -1.00 -90.01 362.18 2.67 -87.34 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: -0.44 Total: 20.18 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: 5.28 Total: -8.13 kcal Atomic # 7 Polarization: -92.95 SS G_CDS: -3.63 Total: -96.58 kcal Atomic # 8 Polarization: -47.16 SS G_CDS: -0.11 Total: -47.27 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 1.56 Total: 44.45 kcal Total: -90.01 2.67 -87.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457986382.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.400 kcal (2) G-P(sol) polarization free energy of solvation -90.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds