Wall clock time and date at job start Tue Mar 31 2020 14:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50704 * 109.47133 * 2 1 4 4 O 1.21284 * 120.00021 * 359.97438 * 3 2 1 5 5 N 1.34772 * 119.99600 * 179.97438 * 3 2 1 6 6 C 1.39956 * 119.99879 * 185.11177 * 5 3 2 7 7 C 1.38992 * 120.00183 * 214.08907 * 6 5 3 8 8 C 1.38207 * 120.22205 * 180.02562 * 7 6 5 9 9 C 1.38019 * 120.22713 * 359.67396 * 8 7 6 10 10 C 1.39579 * 119.99030 * 0.61894 * 9 8 7 11 11 C 1.47864 * 120.10787 * 179.67771 * 10 9 8 12 12 O 1.21555 * 119.99546 * 157.05496 * 11 10 9 13 13 N 1.34772 * 120.00378 * 337.05266 * 11 10 9 14 14 C 1.46499 * 120.00305 * 221.61173 * 13 11 10 15 15 C 1.50700 * 109.47192 * 269.99817 * 14 13 11 16 16 H 1.08002 * 119.99607 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00172 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99935 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 119.99842 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.46888 * 89.99884 * 19 17 15 21 21 H 1.48500 * 109.47082 * 209.99808 * 19 17 15 22 22 H 1.48494 * 109.47187 * 329.99833 * 19 17 15 23 23 C 1.46501 * 119.99699 * 41.60767 * 13 11 10 24 24 C 1.52993 * 109.47289 * 267.09962 * 23 13 11 25 25 C 1.52991 * 109.47192 * 27.10259 * 23 13 11 26 26 C 1.38597 * 120.00004 * 34.10572 * 6 5 3 27 27 H 1.09004 * 109.46781 * 60.00060 * 1 2 3 28 28 H 1.08992 * 109.47370 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47296 * 300.00756 * 1 2 3 30 30 H 1.08998 * 109.47127 * 239.99758 * 2 1 3 31 31 H 1.09006 * 109.46571 * 119.99435 * 2 1 3 32 32 H 0.97000 * 120.00356 * 5.11198 * 5 3 2 33 33 H 1.07999 * 119.88910 * 359.97438 * 7 6 5 34 34 H 1.08010 * 119.88620 * 179.97438 * 8 7 6 35 35 H 1.08001 * 120.00873 * 180.32552 * 9 8 7 36 36 H 1.08996 * 109.47168 * 149.99704 * 14 13 11 37 37 H 1.09002 * 109.47034 * 29.99435 * 14 13 11 38 38 H 0.97004 * 120.00139 * 180.02562 * 18 17 15 39 39 H 1.09004 * 109.46841 * 147.09860 * 23 13 11 40 40 H 1.09005 * 109.47471 * 61.28417 * 24 23 13 41 41 H 1.08998 * 109.47231 * 181.28810 * 24 23 13 42 42 H 1.09002 * 109.47372 * 301.28880 * 24 23 13 43 43 H 1.09006 * 109.47772 * 102.93395 * 25 23 13 44 44 H 1.09000 * 109.47334 * 222.93776 * 25 23 13 45 45 H 1.08998 * 109.47430 * 342.93481 * 25 23 13 46 46 H 1.08003 * 120.10707 * 0.02562 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3427 -0.0005 5 7 3.3574 1.6670 0.0005 6 6 3.8249 2.9818 0.1085 7 6 4.9858 3.3633 -0.5538 8 6 5.4517 4.6603 -0.4499 9 6 4.7638 5.5872 0.3068 10 6 3.6004 5.2125 0.9807 11 6 2.8653 6.2016 1.7978 12 8 1.6849 6.0359 2.0363 13 7 3.5039 7.2868 2.2783 14 6 3.2479 7.7411 3.6473 15 6 2.1070 8.7257 3.6448 16 1 1.6215 8.9872 2.7161 17 6 1.6830 9.2927 4.8279 18 7 0.6870 10.1515 4.8257 19 14 2.5232 8.8409 6.4339 20 1 3.6529 9.7726 6.6806 21 1 1.5469 8.9405 7.5484 22 1 3.0377 7.4505 6.3494 23 6 4.4543 8.0120 1.4315 24 6 5.8655 7.4712 1.6698 25 6 4.0764 7.8210 -0.0386 26 6 3.1303 3.9033 0.8762 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.9872 0.9330 -0.0740 33 1 5.5260 2.6436 -1.1510 34 1 6.3547 4.9508 -0.9665 35 1 5.1283 6.6011 0.3813 36 1 4.1420 8.2222 4.0437 37 1 2.9883 6.8859 4.2714 38 1 0.3889 10.5507 5.6580 39 1 4.4252 9.0732 1.6792 40 1 5.9004 6.4155 1.4005 41 1 6.5756 8.0262 1.0567 42 1 6.1260 7.5866 2.7219 43 1 3.5829 8.7204 -0.4069 44 1 4.9768 7.6350 -0.6241 45 1 3.4001 6.9713 -0.1325 46 1 2.2284 3.6086 1.3921 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000522589934.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:49 Heat of formation + Delta-G solvation = 44.700701 kcal Electronic energy + Delta-G solvation = -27409.570687 eV Core-core repulsion = 23689.163424 eV Total energy + Delta-G solvation = -3720.407263 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.11749 -40.12046 -37.83578 -36.62798 -34.80225 -33.25097 -32.94744 -31.58925 -30.99973 -29.30271 -27.82347 -26.97665 -25.07322 -23.93839 -22.57873 -21.87034 -21.67070 -20.34366 -18.76042 -17.55087 -17.27005 -16.75915 -16.62284 -16.00211 -15.71137 -15.51779 -14.79378 -14.55381 -14.29157 -14.01325 -13.84443 -13.54353 -13.47454 -13.29289 -13.14562 -12.56643 -12.52391 -12.23999 -12.02493 -11.95361 -11.90913 -11.70917 -11.44348 -11.35588 -11.34880 -11.07624 -10.79024 -10.47837 -10.29743 -10.08758 -10.00202 -9.60889 -9.46923 -9.11098 -8.80289 -8.51013 -8.04140 -7.48892 -5.99113 -3.96397 1.00801 1.37774 2.43225 2.83418 3.18958 3.29872 3.38010 3.40101 3.79660 4.01507 4.40888 4.45248 4.74117 4.79259 4.81859 4.88945 5.03289 5.08146 5.18679 5.20412 5.23371 5.32272 5.49816 5.52686 5.55162 5.64590 5.68254 5.74642 5.82396 5.87583 5.97816 6.02460 6.19376 6.24662 6.34106 6.37460 6.44905 6.49176 6.59073 6.75407 6.90738 7.00615 7.19223 7.55123 7.70651 7.97723 8.33662 8.55352 8.87494 9.10907 9.60839 11.14782 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013595 B = 0.003936 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.092698 B = 7112.064713 C = 8457.744292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.140 4.140 3 C 0.502 3.498 4 O -0.506 6.506 5 N -0.677 5.677 6 C 0.125 3.875 7 C -0.129 4.129 8 C -0.124 4.124 9 C -0.163 4.163 10 C -0.115 4.115 11 C 0.566 3.434 12 O -0.492 6.492 13 N -0.621 5.621 14 C 0.227 3.773 15 C -0.521 4.521 16 H 0.078 0.922 17 C 0.069 3.931 18 N -0.898 5.898 19 Si 0.872 3.128 20 H -0.275 1.275 21 H -0.284 1.284 22 H -0.266 1.266 23 C 0.141 3.859 24 C -0.215 4.215 25 C -0.184 4.184 26 C -0.067 4.067 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.408 0.592 33 H 0.123 0.877 34 H 0.128 0.872 35 H 0.211 0.789 36 H 0.028 0.972 37 H 0.026 0.974 38 H 0.263 0.737 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.062 0.938 44 H 0.072 0.928 45 H 0.077 0.923 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.590 -19.049 -12.472 26.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.180 4.180 3 C 0.290 3.710 4 O -0.379 6.379 5 N -0.323 5.323 6 C 0.031 3.969 7 C -0.149 4.149 8 C -0.142 4.142 9 C -0.179 4.179 10 C -0.119 4.119 11 C 0.353 3.647 12 O -0.364 6.364 13 N -0.356 5.356 14 C 0.107 3.893 15 C -0.560 4.560 16 H 0.096 0.904 17 C -0.133 4.133 18 N -0.537 5.537 19 Si 0.699 3.301 20 H -0.201 1.201 21 H -0.210 1.210 22 H -0.191 1.191 23 C 0.036 3.964 24 C -0.272 4.272 25 C -0.241 4.241 26 C -0.088 4.088 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.112 0.888 31 H 0.114 0.886 32 H 0.244 0.756 33 H 0.140 0.860 34 H 0.146 0.854 35 H 0.226 0.774 36 H 0.046 0.954 37 H 0.044 0.956 38 H 0.073 0.927 39 H 0.114 0.886 40 H 0.112 0.888 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.091 0.909 45 H 0.095 0.905 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 12.160 -18.407 -12.176 25.198 hybrid contribution 0.758 -0.603 0.880 1.308 sum 12.918 -19.010 -11.296 25.610 Atomic orbital electron populations 1.21561 0.92619 1.01745 1.03868 1.21630 0.99063 0.92922 1.04406 1.21074 0.81690 0.92468 0.75805 1.90832 1.54798 1.46188 1.46124 1.43544 1.07855 1.06977 1.73913 1.17543 0.95865 0.85004 0.98444 1.20978 0.96976 0.97189 0.99794 1.20898 1.00380 0.92570 1.00392 1.24292 0.93477 1.05044 0.95110 1.20416 0.96484 0.94663 1.00372 1.18047 0.85936 0.81554 0.79196 1.90785 1.14340 1.76783 1.54536 1.47489 1.44287 1.28067 1.15714 1.19570 0.96633 0.95533 0.77546 1.21439 1.15578 1.23037 0.95916 0.90382 1.24895 0.94907 0.94809 0.98649 1.69906 1.27061 1.29577 1.27172 0.86916 0.79651 0.79402 0.84137 1.20115 1.21015 1.19129 1.20993 0.87838 0.97893 0.89659 1.23300 0.96876 1.03648 1.03407 1.22983 1.01875 1.03595 0.95617 1.21225 0.99553 0.91995 0.96039 0.91798 0.91916 0.91594 0.88823 0.88618 0.75607 0.85951 0.85423 0.77356 0.95413 0.95565 0.92726 0.88599 0.88819 0.91575 0.91639 0.91904 0.90916 0.90490 0.84091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.20 37.16 0.34 -0.86 16 2 C -0.14 -1.01 6.42 -27.88 -0.18 -1.19 16 3 C 0.50 5.94 7.56 -10.99 -0.08 5.86 16 4 O -0.51 -8.75 13.71 5.55 0.08 -8.67 16 5 N -0.68 -6.78 5.34 -9.89 -0.05 -6.84 16 6 C 0.12 1.65 6.26 -83.74 -0.52 1.12 16 7 C -0.13 -1.37 9.96 -39.31 -0.39 -1.76 16 8 C -0.12 -1.35 10.02 -39.67 -0.40 -1.74 16 9 C -0.16 -2.23 4.51 -39.16 -0.18 -2.40 16 10 C -0.11 -2.06 5.11 -104.99 -0.54 -2.59 16 11 C 0.57 12.71 5.64 -12.32 -0.07 12.64 16 12 O -0.49 -13.44 16.91 5.32 0.09 -13.35 16 13 N -0.62 -13.39 2.42 -168.58 -0.41 -13.79 16 14 C 0.23 5.67 4.25 -5.19 -0.02 5.65 16 15 C -0.52 -15.48 9.80 -34.44 -0.34 -15.82 16 16 H 0.08 2.60 8.06 -52.49 -0.42 2.17 16 17 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 18 N -0.90 -28.52 13.96 55.43 0.77 -27.75 16 19 Si 0.87 21.81 27.47 -169.99 -4.67 17.15 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 23 C 0.14 2.32 3.13 -67.94 -0.21 2.11 16 24 C -0.21 -2.72 8.58 37.15 0.32 -2.40 16 25 C -0.18 -2.67 7.92 37.15 0.29 -2.37 16 26 C -0.07 -1.17 8.19 -38.98 -0.32 -1.49 16 27 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 30 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.41 2.31 8.82 -40.82 -0.36 1.95 16 33 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 34 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 35 H 0.21 2.63 0.64 -100.22 -0.06 2.57 16 36 H 0.03 0.64 7.50 -51.93 -0.39 0.25 16 37 H 0.03 0.69 7.09 -51.93 -0.37 0.32 16 38 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 39 H 0.10 1.66 8.09 -51.93 -0.42 1.24 16 40 H 0.09 1.14 4.12 -53.93 -0.22 0.92 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.07 0.77 6.56 -51.93 -0.34 0.43 16 45 H 0.08 1.30 4.06 -51.93 -0.21 1.09 16 46 H 0.14 2.84 6.22 -52.48 -0.33 2.52 16 LS Contribution 363.24 15.07 5.47 5.47 Total: -1.00 -38.81 363.24 -7.62 -46.43 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -6.52 Total: 4.63 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: -2.39 Total: -3.28 kcal Atomic # 7 Polarization: -48.69 SS G_CDS: 0.31 Total: -48.38 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: 0.17 Total: -22.02 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.15 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -38.81 -7.62 -46.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522589934.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.134 kcal (2) G-P(sol) polarization free energy of solvation -38.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds