Wall clock time and date at job start Tue Mar 31 2020 14:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47086 * 2 1 4 4 O 1.42895 * 109.47122 * 119.99985 * 2 1 3 5 5 C 1.42908 * 113.99794 * 89.99888 * 4 2 1 6 6 C 1.52998 * 115.54866 * 325.66851 * 5 4 2 7 7 C 1.53069 * 117.51042 * 111.39313 * 5 4 2 8 8 C 1.52999 * 59.98543 * 107.47520 * 7 5 4 9 9 H 1.09000 * 117.50140 * 107.49532 * 8 7 5 10 10 N 1.46499 * 117.49920 * 252.49865 * 8 7 5 11 11 C 1.34774 * 119.99580 * 223.74619 * 10 8 7 12 12 O 1.21589 * 120.00718 * 359.97438 * 11 10 8 13 13 N 1.34777 * 119.99866 * 179.97438 * 11 10 8 14 14 C 1.39960 * 120.00248 * 184.27715 * 13 11 10 15 15 C 1.39288 * 119.94437 * 213.34947 * 14 13 11 16 16 C 1.38486 * 120.42751 * 179.97438 * 15 14 13 17 17 C 1.37686 * 120.31937 * 359.76396 * 16 15 14 18 18 C 1.40737 * 119.88471 * 0.49109 * 17 16 15 19 19 C 1.41403 * 120.21217 * 179.76627 * 18 17 16 20 20 H 1.07998 * 120.00113 * 35.98016 * 19 18 17 21 21 C 1.39936 * 120.00035 * 215.98546 * 19 18 17 22 22 N 1.30829 * 119.99872 * 23.05051 * 21 19 18 23 23 Si 1.86804 * 119.99874 * 203.04997 * 21 19 18 24 24 H 1.48501 * 109.46894 * 90.00331 * 23 21 19 25 25 H 1.48500 * 109.46836 * 209.99947 * 23 21 19 26 26 H 1.48493 * 109.47252 * 329.99991 * 23 21 19 27 27 C 1.38233 * 119.94820 * 33.32607 * 14 13 11 28 28 H 1.08994 * 109.47661 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47152 * 300.00232 * 1 2 3 30 30 H 1.09011 * 109.47393 * 59.99695 * 1 2 3 31 31 H 1.08997 * 109.46722 * 240.00356 * 2 1 3 32 32 H 1.08999 * 109.47402 * 180.02562 * 3 2 1 33 33 H 1.09008 * 109.47412 * 299.99884 * 3 2 1 34 34 H 1.09001 * 109.47315 * 59.99867 * 3 2 1 35 35 H 1.08994 * 109.47237 * 274.33092 * 6 5 4 36 36 H 1.09002 * 109.47207 * 34.33083 * 6 5 4 37 37 H 1.08998 * 109.46992 * 154.32981 * 6 5 4 38 38 H 1.08997 * 117.51812 * 0.02562 * 7 5 4 39 39 H 1.09000 * 117.49073 * 214.96233 * 7 5 4 40 40 H 0.96993 * 120.00184 * 43.73983 * 10 8 7 41 41 H 0.97001 * 119.99959 * 4.27061 * 13 11 10 42 42 H 1.08005 * 119.78675 * 359.97438 * 15 14 13 43 43 H 1.08007 * 119.83850 * 180.02562 * 16 15 14 44 44 H 1.08008 * 120.05523 * 180.28463 * 17 16 15 45 45 H 0.97000 * 119.99876 * 7.58821 * 22 21 19 46 46 H 1.08004 * 120.15635 * 359.97438 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.2000 -2.0782 0.9885 6 6 1.2084 -2.7671 0.0489 7 6 3.6385 -2.6014 1.0055 8 6 2.7091 -2.8790 2.1888 9 1 2.3375 -3.8966 2.3090 10 7 2.9606 -2.1471 3.4327 11 6 2.9152 -2.7924 4.6150 12 8 2.6651 -3.9818 4.6495 13 7 3.1470 -2.1192 5.7594 14 6 3.1886 -2.8051 6.9787 15 6 2.7400 -2.1836 8.1417 16 6 2.7760 -2.8531 9.3534 17 6 3.2517 -4.1434 9.4207 18 6 3.7133 -4.7823 8.2547 19 6 4.2078 -6.1056 8.3167 20 1 3.7579 -6.8192 8.9911 21 6 5.2802 -6.4906 7.5044 22 7 6.1063 -5.5883 7.0405 23 14 5.5323 -8.2927 7.0823 24 1 4.7942 -8.6169 5.8351 25 1 6.9800 -8.5567 6.8835 26 1 5.0230 -9.1371 8.1925 27 6 3.6742 -4.0984 7.0268 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 0.3154 -3.0492 0.6066 36 1 0.9341 -2.0835 -0.7545 37 1 1.6692 -3.6594 -0.3748 38 1 4.4370 -1.8743 1.1531 39 1 3.8780 -3.4363 0.3470 40 1 3.1598 -1.1983 3.4053 41 1 3.2852 -1.1593 5.7380 42 1 2.3616 -1.1729 8.0982 43 1 2.4254 -2.3622 10.2493 44 1 3.2736 -4.6632 10.3672 45 1 6.0429 -4.6699 7.3463 46 1 4.0214 -4.5814 6.1253 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000529116981.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:12 Heat of formation + Delta-G solvation = -31.112135 kcal Electronic energy + Delta-G solvation = -26526.461623 eV Core-core repulsion = 22802.766868 eV Total energy + Delta-G solvation = -3723.694754 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.19545 -39.31565 -37.48776 -36.26768 -34.35310 -33.28633 -32.82905 -32.10949 -29.29560 -29.07169 -28.00554 -27.09629 -24.96881 -22.92309 -22.11558 -21.30540 -20.86256 -20.29379 -19.95940 -18.23985 -17.82083 -17.24074 -15.84923 -15.45402 -15.19128 -15.07675 -14.88525 -14.55458 -14.17776 -13.95996 -13.88473 -13.52519 -13.40445 -12.98579 -12.83222 -12.59331 -12.57418 -12.34622 -12.25458 -12.13120 -12.01059 -11.81977 -11.26302 -11.05340 -11.01286 -10.93876 -10.80256 -10.48172 -10.37449 -10.30062 -9.71865 -9.42312 -9.32855 -9.02661 -8.81091 -8.56019 -7.44621 -7.13006 -6.85454 -4.31491 2.65586 2.86880 2.94805 3.16359 3.27962 3.36619 3.46585 3.57008 3.89476 4.18717 4.39676 4.53581 4.61759 4.65152 4.72588 4.78897 4.85320 4.89221 5.14540 5.25615 5.38607 5.42755 5.48839 5.52923 5.56802 5.63656 5.65086 5.76474 5.83891 5.88241 5.95823 6.11028 6.34185 6.62304 6.65352 6.80203 6.90529 7.05248 7.09024 7.28896 7.60364 7.74651 7.84844 7.92454 7.96699 8.32651 8.36840 8.50019 8.84918 9.04825 9.07762 10.27578 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015694 B = 0.003151 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.652941 B = 8884.480640 C =10116.441579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.080 3.920 3 C -0.150 4.150 4 O -0.341 6.341 5 C 0.028 3.972 6 C -0.146 4.146 7 C -0.209 4.209 8 C 0.137 3.863 9 H 0.145 0.855 10 N -0.714 5.714 11 C 0.702 3.298 12 O -0.562 6.562 13 N -0.681 5.681 14 C 0.174 3.826 15 C -0.267 4.267 16 C -0.075 4.075 17 C -0.231 4.231 18 C 0.109 3.891 19 C -0.533 4.533 20 H 0.075 0.925 21 C 0.042 3.958 22 N -0.807 5.807 23 Si 1.066 2.934 24 H -0.275 1.275 25 H -0.279 1.279 26 H -0.278 1.278 27 C -0.190 4.190 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.102 0.898 39 H 0.106 0.894 40 H 0.400 0.600 41 H 0.395 0.605 42 H 0.092 0.908 43 H 0.094 0.906 44 H 0.094 0.906 45 H 0.293 0.707 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.318 11.197 -16.333 20.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.023 3.977 3 C -0.207 4.207 4 O -0.260 6.260 5 C -0.014 4.014 6 C -0.203 4.203 7 C -0.248 4.248 8 C 0.029 3.971 9 H 0.162 0.838 10 N -0.367 5.367 11 C 0.402 3.598 12 O -0.437 6.437 13 N -0.327 5.327 14 C 0.082 3.918 15 C -0.288 4.288 16 C -0.094 4.094 17 C -0.251 4.251 18 C 0.105 3.895 19 C -0.562 4.562 20 H 0.093 0.907 21 C -0.178 4.178 22 N -0.430 5.430 23 Si 0.891 3.109 24 H -0.201 1.201 25 H -0.204 1.204 26 H -0.203 1.203 27 C -0.212 4.212 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.120 0.880 39 H 0.124 0.876 40 H 0.234 0.766 41 H 0.229 0.771 42 H 0.110 0.890 43 H 0.112 0.888 44 H 0.113 0.887 45 H 0.106 0.894 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.538 9.194 -17.052 20.149 hybrid contribution -0.843 2.156 0.635 2.401 sum -6.382 11.350 -16.417 20.954 Atomic orbital electron populations 1.22518 0.95908 1.03035 1.02477 1.22080 0.93681 0.93356 0.88624 1.21869 1.01806 0.94522 1.02527 1.87908 1.85826 1.17345 1.34888 1.22565 0.95094 0.82379 1.01329 1.21975 0.98934 1.00813 0.98608 1.24309 0.94360 1.03893 1.02272 1.21813 1.00004 0.96493 0.78807 0.83765 1.44299 1.76460 1.12322 1.03653 1.15907 0.78295 0.85412 0.80156 1.90986 1.54036 1.13126 1.85556 1.42552 1.74733 1.10463 1.04916 1.17336 0.98948 0.93169 0.82380 1.20017 1.15753 1.00456 0.92589 1.20360 0.98770 0.94899 0.95390 1.21099 1.11643 0.95064 0.97328 1.17585 0.89324 0.92663 0.89905 1.20434 1.16404 0.96240 1.23108 0.90685 1.26863 0.92231 1.07109 0.91634 1.70383 1.31746 1.05943 1.34943 0.83632 0.76898 0.72938 0.77452 1.20066 1.20421 1.20324 1.21236 1.07172 0.94446 0.98314 0.91614 0.91783 0.91877 0.91772 0.91998 0.91292 0.91774 0.91008 0.90815 0.90849 0.87986 0.87563 0.76618 0.77115 0.89010 0.88803 0.88736 0.89420 0.86010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.37 9.03 37.16 0.34 -1.03 16 2 C 0.08 0.66 2.80 -26.73 -0.07 0.59 16 3 C -0.15 -1.06 9.56 37.15 0.36 -0.71 16 4 O -0.34 -3.74 9.67 -35.23 -0.34 -4.08 16 5 C 0.03 0.30 2.92 -90.58 -0.26 0.04 16 6 C -0.15 -1.24 8.32 37.16 0.31 -0.93 16 7 C -0.21 -2.30 10.06 -26.70 -0.27 -2.57 16 8 C 0.14 1.89 6.15 -67.93 -0.42 1.48 16 9 H 0.14 2.21 7.40 -51.93 -0.38 1.82 16 10 N -0.71 -10.99 5.47 -58.68 -0.32 -11.31 16 11 C 0.70 14.25 8.31 -86.92 -0.72 13.53 16 12 O -0.56 -14.07 13.54 5.29 0.07 -14.00 16 13 N -0.68 -13.36 5.35 -14.27 -0.08 -13.44 16 14 C 0.17 4.17 6.28 -83.76 -0.53 3.64 16 15 C -0.27 -5.94 9.97 -39.10 -0.39 -6.33 16 16 C -0.08 -1.71 10.02 -39.69 -0.40 -2.11 16 17 C -0.23 -5.88 9.79 -38.84 -0.38 -6.26 16 18 C 0.11 3.05 5.03 -106.85 -0.54 2.51 16 19 C -0.53 -15.11 8.94 -37.74 -0.34 -15.45 16 20 H 0.08 2.07 7.94 -52.49 -0.42 1.65 16 21 C 0.04 1.14 4.94 -17.34 -0.09 1.06 16 22 N -0.81 -22.97 12.68 55.55 0.70 -22.26 16 23 Si 1.07 23.53 29.99 -169.99 -5.10 18.43 16 24 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 25 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 26 H -0.28 -5.77 7.11 56.52 0.40 -5.36 16 27 C -0.19 -5.23 6.74 -38.69 -0.26 -5.49 16 28 H 0.06 0.50 5.73 -51.93 -0.30 0.21 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.37 8.14 -51.92 -0.42 -0.06 16 31 H 0.06 0.48 6.71 -51.93 -0.35 0.13 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.37 8.14 -51.92 -0.42 -0.05 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.64 8.03 -51.93 -0.42 0.22 16 36 H 0.07 0.52 4.79 -51.93 -0.25 0.27 16 37 H 0.07 0.54 7.90 -51.93 -0.41 0.13 16 38 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.11 1.01 8.05 -51.93 -0.42 0.59 16 40 H 0.40 5.20 8.41 -40.82 -0.34 4.85 16 41 H 0.40 6.10 8.83 -40.82 -0.36 5.74 16 42 H 0.09 1.76 8.06 -52.48 -0.42 1.34 16 43 H 0.09 1.82 8.06 -52.48 -0.42 1.39 16 44 H 0.09 2.27 8.06 -52.48 -0.42 1.85 16 45 H 0.29 8.56 7.07 -40.82 -0.29 8.27 16 46 H 0.12 3.67 5.54 -52.48 -0.29 3.38 16 LS Contribution 376.31 15.07 5.67 5.67 Total: -1.00 -33.05 376.31 -9.88 -42.93 By element: Atomic # 1 Polarization: 22.94 SS G_CDS: -6.83 Total: 16.12 kcal Atomic # 6 Polarization: -14.39 SS G_CDS: -3.66 Total: -18.05 kcal Atomic # 7 Polarization: -47.32 SS G_CDS: 0.31 Total: -47.01 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: -0.27 Total: -18.08 kcal Atomic # 14 Polarization: 23.53 SS G_CDS: -5.10 Total: 18.43 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.05 -9.88 -42.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000529116981.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.818 kcal (2) G-P(sol) polarization free energy of solvation -33.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds