Wall clock time and date at job start Tue Mar 31 2020 14:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47086 * 2 1 4 4 O 1.42895 * 109.47122 * 119.99985 * 2 1 3 5 5 C 1.42908 * 113.99794 * 89.99888 * 4 2 1 6 6 C 1.52998 * 115.54866 * 325.66851 * 5 4 2 7 7 C 1.53069 * 117.51042 * 111.39313 * 5 4 2 8 8 C 1.52999 * 59.98543 * 107.47520 * 7 5 4 9 9 H 1.09000 * 117.50140 * 107.49532 * 8 7 5 10 10 N 1.46499 * 117.49920 * 252.49865 * 8 7 5 11 11 C 1.34774 * 119.99580 * 223.74619 * 10 8 7 12 12 O 1.21589 * 120.00718 * 359.97438 * 11 10 8 13 13 N 1.34777 * 119.99866 * 179.97438 * 11 10 8 14 14 C 1.39960 * 120.00248 * 184.27715 * 13 11 10 15 15 C 1.39288 * 119.94437 * 213.34947 * 14 13 11 16 16 C 1.38486 * 120.42751 * 179.97438 * 15 14 13 17 17 C 1.37686 * 120.31937 * 359.76396 * 16 15 14 18 18 C 1.40737 * 119.88471 * 0.49109 * 17 16 15 19 19 C 1.41403 * 120.21217 * 179.76627 * 18 17 16 20 20 H 1.07998 * 120.00113 * 35.98016 * 19 18 17 21 21 C 1.39936 * 120.00035 * 215.98546 * 19 18 17 22 22 N 1.30829 * 119.99872 * 23.05051 * 21 19 18 23 23 Si 1.86804 * 119.99874 * 203.04997 * 21 19 18 24 24 H 1.48501 * 109.46894 * 90.00331 * 23 21 19 25 25 H 1.48500 * 109.46836 * 209.99947 * 23 21 19 26 26 H 1.48493 * 109.47252 * 329.99991 * 23 21 19 27 27 C 1.38233 * 119.94820 * 33.32607 * 14 13 11 28 28 H 1.08994 * 109.47661 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47152 * 300.00232 * 1 2 3 30 30 H 1.09011 * 109.47393 * 59.99695 * 1 2 3 31 31 H 1.08997 * 109.46722 * 240.00356 * 2 1 3 32 32 H 1.08999 * 109.47402 * 180.02562 * 3 2 1 33 33 H 1.09008 * 109.47412 * 299.99884 * 3 2 1 34 34 H 1.09001 * 109.47315 * 59.99867 * 3 2 1 35 35 H 1.08994 * 109.47237 * 274.33092 * 6 5 4 36 36 H 1.09002 * 109.47207 * 34.33083 * 6 5 4 37 37 H 1.08998 * 109.46992 * 154.32981 * 6 5 4 38 38 H 1.08997 * 117.51812 * 0.02562 * 7 5 4 39 39 H 1.09000 * 117.49073 * 214.96233 * 7 5 4 40 40 H 0.96993 * 120.00184 * 43.73983 * 10 8 7 41 41 H 0.97001 * 119.99959 * 4.27061 * 13 11 10 42 42 H 1.08005 * 119.78675 * 359.97438 * 15 14 13 43 43 H 1.08007 * 119.83850 * 180.02562 * 16 15 14 44 44 H 1.08008 * 120.05523 * 180.28463 * 17 16 15 45 45 H 0.97000 * 119.99876 * 7.58821 * 22 21 19 46 46 H 1.08004 * 120.15635 * 359.97438 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.2000 -2.0782 0.9885 6 6 1.2084 -2.7671 0.0489 7 6 3.6385 -2.6014 1.0055 8 6 2.7091 -2.8790 2.1888 9 1 2.3375 -3.8966 2.3090 10 7 2.9606 -2.1471 3.4327 11 6 2.9152 -2.7924 4.6150 12 8 2.6651 -3.9818 4.6495 13 7 3.1470 -2.1192 5.7594 14 6 3.1886 -2.8051 6.9787 15 6 2.7400 -2.1836 8.1417 16 6 2.7760 -2.8531 9.3534 17 6 3.2517 -4.1434 9.4207 18 6 3.7133 -4.7823 8.2547 19 6 4.2078 -6.1056 8.3167 20 1 3.7579 -6.8192 8.9911 21 6 5.2802 -6.4906 7.5044 22 7 6.1063 -5.5883 7.0405 23 14 5.5323 -8.2927 7.0823 24 1 4.7942 -8.6169 5.8351 25 1 6.9800 -8.5567 6.8835 26 1 5.0230 -9.1371 8.1925 27 6 3.6742 -4.0984 7.0268 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 0.3154 -3.0492 0.6066 36 1 0.9341 -2.0835 -0.7545 37 1 1.6692 -3.6594 -0.3748 38 1 4.4370 -1.8743 1.1531 39 1 3.8780 -3.4363 0.3470 40 1 3.1598 -1.1983 3.4053 41 1 3.2852 -1.1593 5.7380 42 1 2.3616 -1.1729 8.0982 43 1 2.4254 -2.3622 10.2493 44 1 3.2736 -4.6632 10.3672 45 1 6.0429 -4.6699 7.3463 46 1 4.0214 -4.5814 6.1253 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000529116981.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:11 Heat of formation + Delta-G solvation = -52.663414 kcal Electronic energy + Delta-G solvation = -26527.396156 eV Core-core repulsion = 22802.766868 eV Total energy + Delta-G solvation = -3724.629288 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.64436 -40.43409 -39.23512 -37.31185 -36.22296 -35.12139 -34.12007 -32.89764 -31.26666 -30.26054 -29.40759 -27.72406 -27.00501 -24.33779 -23.13818 -22.85430 -22.39478 -21.69668 -21.02163 -20.07821 -19.38234 -18.42098 -17.39174 -16.82506 -16.42207 -16.30256 -16.22228 -15.87891 -15.82166 -15.50608 -15.18297 -14.96506 -14.63991 -14.20861 -14.18885 -13.92782 -13.77419 -13.24017 -13.17503 -13.06518 -12.95657 -12.90031 -12.79784 -12.71362 -12.36915 -12.26776 -12.08039 -11.97535 -11.69286 -11.59222 -11.54323 -11.26669 -10.91944 -10.81245 -10.25890 -9.76994 -9.45284 -9.18915 -8.76493 -6.45259 0.76675 0.93988 1.46291 1.50433 1.60058 1.74970 1.97886 2.35171 2.41302 2.73070 2.82745 3.11266 3.54112 3.66692 3.69788 3.91078 4.03850 4.18986 4.27625 4.32870 4.36294 4.54910 4.60697 4.71300 4.74788 4.75760 4.79960 4.80396 4.91297 4.95685 4.98083 5.02852 5.05853 5.07417 5.12803 5.30466 5.37500 5.42457 5.58695 5.60231 5.82800 5.85936 5.90122 6.06925 6.30464 6.32492 6.39811 6.80150 6.98600 7.01140 7.49421 8.13915 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015694 B = 0.003151 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.652941 B = 8884.480640 C =10116.441579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.073 3.927 3 C -0.148 4.148 4 O -0.359 6.359 5 C 0.053 3.947 6 C -0.146 4.146 7 C -0.194 4.194 8 C 0.092 3.908 9 H 0.121 0.879 10 N -0.692 5.692 11 C 0.697 3.303 12 O -0.615 6.615 13 N -0.670 5.670 14 C 0.174 3.826 15 C -0.249 4.249 16 C -0.070 4.070 17 C -0.246 4.246 18 C 0.077 3.923 19 C -0.573 4.573 20 H 0.069 0.931 21 C 0.002 3.998 22 N -0.831 5.831 23 Si 1.115 2.885 24 H -0.275 1.275 25 H -0.267 1.267 26 H -0.256 1.256 27 C -0.214 4.214 28 H 0.063 0.937 29 H 0.051 0.949 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.058 0.942 33 H 0.089 0.911 34 H 0.055 0.945 35 H 0.066 0.934 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.104 0.896 39 H 0.124 0.876 40 H 0.413 0.587 41 H 0.418 0.582 42 H 0.137 0.863 43 H 0.139 0.861 44 H 0.100 0.900 45 H 0.275 0.725 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.301 13.341 -17.682 23.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.016 3.984 3 C -0.205 4.205 4 O -0.278 6.278 5 C 0.011 3.989 6 C -0.203 4.203 7 C -0.233 4.233 8 C -0.016 4.016 9 H 0.139 0.861 10 N -0.346 5.346 11 C 0.397 3.603 12 O -0.494 6.494 13 N -0.318 5.318 14 C 0.079 3.921 15 C -0.270 4.270 16 C -0.089 4.089 17 C -0.266 4.266 18 C 0.074 3.926 19 C -0.603 4.603 20 H 0.087 0.913 21 C -0.212 4.212 22 N -0.455 5.455 23 Si 0.933 3.067 24 H -0.200 1.200 25 H -0.191 1.191 26 H -0.180 1.180 27 C -0.236 4.236 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.102 0.898 31 H 0.096 0.904 32 H 0.077 0.923 33 H 0.108 0.892 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.112 0.888 37 H 0.104 0.896 38 H 0.122 0.878 39 H 0.142 0.858 40 H 0.250 0.750 41 H 0.255 0.745 42 H 0.154 0.846 43 H 0.157 0.843 44 H 0.119 0.881 45 H 0.086 0.914 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.526 11.426 -18.434 22.649 hybrid contribution -0.682 1.748 1.022 2.137 sum -7.209 13.174 -17.412 22.994 Atomic orbital electron populations 1.22512 0.95346 1.03029 1.02914 1.22333 0.94172 0.93816 0.88061 1.21881 1.01628 0.93824 1.03180 1.87881 1.86047 1.17211 1.36706 1.22514 0.95351 0.82516 0.98490 1.22039 0.98144 1.01602 0.98546 1.24360 0.94592 1.04284 1.00030 1.21997 1.03945 0.96514 0.79099 0.86096 1.44073 1.75047 1.12779 1.02714 1.16139 0.77990 0.84868 0.81266 1.90956 1.56413 1.15653 1.86400 1.42338 1.74414 1.11369 1.03709 1.17493 0.97636 0.92345 0.84593 1.20546 1.12950 1.02023 0.91457 1.20843 0.97010 0.93696 0.97337 1.21323 1.11993 0.96577 0.96751 1.17931 0.90321 0.93268 0.91121 1.20623 1.17752 0.97060 1.24847 0.91266 1.28270 0.91433 1.10596 0.90861 1.70502 1.33004 1.05338 1.36637 0.83057 0.77501 0.68354 0.77811 1.20027 1.19140 1.18030 1.21029 1.09292 0.96355 0.96920 0.91853 0.92993 0.89825 0.90444 0.92289 0.89226 0.92555 0.91553 0.88815 0.89645 0.87793 0.85819 0.75015 0.74480 0.84551 0.84340 0.88135 0.91358 0.89605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.28 9.03 71.98 0.65 -1.63 16 2 C 0.07 1.02 2.80 30.59 0.09 1.10 16 3 C -0.15 -1.74 9.56 71.98 0.69 -1.05 16 4 O -0.36 -7.23 9.67 -148.98 -1.44 -8.67 16 5 C 0.05 1.07 2.92 -10.77 -0.03 1.04 16 6 C -0.15 -2.20 8.32 71.98 0.60 -1.60 16 7 C -0.19 -4.03 10.06 30.62 0.31 -3.72 16 8 C 0.09 2.56 6.15 44.99 0.28 2.83 16 9 H 0.12 3.95 7.40 -2.39 -0.02 3.93 16 10 N -0.69 -21.40 5.47 -457.82 -2.50 -23.91 16 11 C 0.70 28.98 8.31 179.06 1.49 30.46 16 12 O -0.62 -32.50 13.54 -4.00 -0.05 -32.56 16 13 N -0.67 -26.05 5.35 -317.32 -1.70 -27.74 16 14 C 0.17 8.27 6.28 38.09 0.24 8.51 16 15 C -0.25 -10.38 9.97 22.58 0.23 -10.15 16 16 C -0.07 -3.02 10.02 22.20 0.22 -2.79 16 17 C -0.25 -12.58 9.79 22.75 0.22 -12.36 16 18 C 0.08 4.47 5.03 -21.31 -0.11 4.36 16 19 C -0.57 -34.22 8.94 23.46 0.21 -34.01 16 20 H 0.07 4.03 7.94 -2.91 -0.02 4.01 16 21 C 0.00 0.12 4.94 85.25 0.42 0.54 16 22 N -0.83 -49.88 12.68 21.82 0.28 -49.60 16 23 Si 1.12 49.08 29.99 68.60 2.06 51.13 16 24 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 25 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 26 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 27 C -0.21 -12.28 6.74 22.85 0.15 -12.13 16 28 H 0.06 0.83 5.73 -2.39 -0.01 0.81 16 29 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.08 0.71 8.14 -2.38 -0.02 0.69 16 31 H 0.08 0.89 6.71 -2.39 -0.02 0.88 16 32 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16 34 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.07 1.10 8.03 -2.39 -0.02 1.08 16 36 H 0.09 1.04 4.79 -2.39 -0.01 1.03 16 37 H 0.08 1.09 7.90 -2.39 -0.02 1.07 16 38 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.12 2.14 8.05 -2.39 -0.02 2.12 16 40 H 0.41 10.37 8.41 -92.71 -0.78 9.59 16 41 H 0.42 12.12 8.83 -92.71 -0.82 11.30 16 42 H 0.14 4.51 8.06 -2.91 -0.02 4.49 16 43 H 0.14 4.71 8.06 -2.91 -0.02 4.69 16 44 H 0.10 4.87 8.06 -2.91 -0.02 4.85 16 45 H 0.28 17.13 7.07 -92.71 -0.66 16.47 16 46 H 0.09 5.53 5.54 -2.91 -0.02 5.51 16 Total: -1.00 -77.43 376.31 1.81 -75.62 By element: Atomic # 1 Polarization: 46.79 SS G_CDS: -0.47 Total: 46.32 kcal Atomic # 6 Polarization: -36.25 SS G_CDS: 5.65 Total: -30.60 kcal Atomic # 7 Polarization: -97.32 SS G_CDS: -3.92 Total: -101.25 kcal Atomic # 8 Polarization: -39.73 SS G_CDS: -1.50 Total: -41.22 kcal Atomic # 14 Polarization: 49.08 SS G_CDS: 2.06 Total: 51.13 kcal Total: -77.43 1.81 -75.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000529116981.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.957 kcal (2) G-P(sol) polarization free energy of solvation -77.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds