Wall clock time and date at job start Tue Mar 31 2020 14:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46941 * 2 1 4 4 O 1.42900 * 109.47143 * 119.99476 * 2 1 3 5 5 C 1.35491 * 117.00040 * 150.00035 * 4 2 1 6 6 C 1.39172 * 119.52630 * 180.02562 * 5 4 2 7 7 C 1.37956 * 119.26299 * 179.97438 * 6 5 4 8 8 C 1.40278 * 118.35891 * 359.97438 * 7 6 5 9 9 C 1.47619 * 120.49693 * 180.02562 * 8 7 6 10 10 O 1.21570 * 120.00219 * 325.03338 * 9 8 7 11 11 N 1.34779 * 119.99562 * 145.03235 * 9 8 7 12 12 C 1.46921 * 120.62813 * 174.42141 * 11 9 8 13 13 C 1.53198 * 108.89505 * 126.46099 * 12 11 9 14 14 C 1.53040 * 109.30981 * 54.56302 * 13 12 11 15 15 C 1.50699 * 109.45933 * 178.62799 * 14 13 12 16 16 H 1.07996 * 119.99653 * 0.02562 * 15 14 13 17 17 C 1.37869 * 120.00076 * 179.97438 * 15 14 13 18 18 N 1.31522 * 120.00072 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00296 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46929 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47466 * 119.99883 * 19 17 15 22 22 H 1.48499 * 109.47558 * 240.00376 * 19 17 15 23 23 C 1.53039 * 109.53825 * 298.63890 * 14 13 12 24 24 C 1.46962 * 120.65822 * 354.23985 * 11 9 8 25 25 C 1.39520 * 119.00445 * 0.27707 * 8 7 6 26 26 N 1.31672 * 120.62586 * 359.43225 * 25 8 7 27 27 H 1.08997 * 109.47692 * 300.00156 * 1 2 3 28 28 H 1.09005 * 109.46847 * 60.00339 * 1 2 3 29 29 H 1.08994 * 109.47231 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47692 * 239.99844 * 2 1 3 31 31 H 1.08998 * 109.47475 * 59.99774 * 3 2 1 32 32 H 1.09002 * 109.47313 * 179.97438 * 3 2 1 33 33 H 1.09005 * 109.47073 * 299.99522 * 3 2 1 34 34 H 1.08001 * 120.36345 * 359.95540 * 6 5 4 35 35 H 1.08003 * 120.81657 * 180.02562 * 7 6 5 36 36 H 1.09001 * 109.58825 * 6.60446 * 12 11 9 37 37 H 1.08996 * 109.58995 * 246.31968 * 12 11 9 38 38 H 1.08997 * 109.49929 * 174.51535 * 13 12 11 39 39 H 1.09000 * 109.49611 * 294.58043 * 13 12 11 40 40 H 1.09000 * 109.45629 * 58.65569 * 14 13 12 41 41 H 0.97001 * 119.99561 * 180.02562 * 18 17 15 42 42 H 1.08998 * 109.49538 * 181.32067 * 23 14 13 43 43 H 1.08998 * 109.49504 * 301.41005 * 23 14 13 44 44 H 1.08990 * 109.46897 * 113.74951 * 24 11 9 45 45 H 1.09003 * 109.70985 * 353.46081 * 24 11 9 46 46 H 1.08003 * 119.68928 * 179.72496 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6735 1.1668 5 6 3.1971 -1.3120 1.0655 6 6 3.7104 -1.9855 2.1700 7 6 4.9230 -2.6342 2.0606 8 6 5.5945 -2.5884 0.8299 9 6 6.8947 -3.2665 0.6602 10 8 7.6832 -3.3092 1.5845 11 7 7.2076 -3.8383 -0.5195 12 6 8.5425 -4.4095 -0.7438 13 6 8.3890 -5.8582 -1.2179 14 6 7.4755 -5.8949 -2.4452 15 6 7.3492 -7.3145 -2.9347 16 1 7.8680 -8.1107 -2.4217 17 6 6.5705 -7.5970 -4.0368 18 7 5.9382 -6.6274 -4.6612 19 14 6.4133 -9.3568 -4.6432 20 1 7.2173 -10.2534 -3.7744 21 1 4.9878 -9.7706 -4.5980 22 1 6.9104 -9.4455 -6.0397 23 6 6.0916 -5.3604 -2.0693 24 6 6.2191 -3.9062 -1.6049 25 6 5.0176 -1.8880 -0.2299 26 7 3.8550 -1.2874 -0.0832 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.6766 1.9564 0.8899 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9563 -0.8901 34 1 3.1655 -1.9998 3.1024 35 1 5.3444 -3.1648 2.9016 36 1 9.1103 -4.3877 0.1864 37 1 9.0650 -3.8296 -1.5044 38 1 9.3673 -6.2607 -1.4804 39 1 7.9512 -6.4577 -0.4198 40 1 7.9021 -5.2753 -3.2340 41 1 5.3900 -6.8263 -5.4364 42 1 5.4348 -5.4087 -2.9378 43 1 5.6749 -5.9645 -1.2635 44 1 6.5499 -3.2846 -2.4368 45 1 5.2532 -3.5515 -1.2452 46 1 5.5272 -1.8418 -1.1811 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000543833860.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:18 Heat of formation + Delta-G solvation = -39.715602 kcal Electronic energy + Delta-G solvation = -26900.791200 eV Core-core repulsion = 23176.723371 eV Total energy + Delta-G solvation = -3724.067829 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.04646 -39.70376 -38.09876 -36.82556 -33.76982 -33.41595 -32.62756 -31.72088 -30.46800 -29.66592 -27.52914 -26.39422 -24.40168 -24.30439 -22.71954 -22.35083 -21.31396 -20.21325 -18.86097 -18.53146 -17.49854 -16.71423 -16.24914 -15.94512 -15.60723 -15.04454 -14.75414 -14.59377 -14.51526 -14.15704 -13.86237 -13.51086 -13.20626 -13.08611 -12.91496 -12.79252 -12.59973 -12.56144 -12.44834 -12.32198 -12.12245 -11.61557 -11.32889 -11.15485 -10.99563 -10.95883 -10.64400 -10.42444 -10.19412 -10.05594 -9.98046 -9.65499 -9.43873 -9.20830 -8.98855 -8.56681 -8.41577 -8.05537 -6.06392 -4.12271 0.76787 1.09451 2.79377 2.94488 3.25390 3.33070 3.34215 3.38190 3.75554 4.08018 4.38677 4.60786 4.65291 4.72216 4.76263 4.91745 4.93363 5.03756 5.23306 5.28470 5.43936 5.45988 5.48269 5.54665 5.59031 5.71307 5.75598 5.84420 5.88068 5.93116 5.98101 6.04135 6.10660 6.24050 6.24705 6.40102 6.60446 6.84533 6.98969 7.07112 7.08764 7.23065 7.62138 7.64289 7.81942 7.87748 7.99896 8.36759 8.43238 8.91291 9.53147 10.99179 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.014015 B = 0.003321 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.353463 B = 8430.267505 C = 9808.302546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.078 3.922 3 C -0.168 4.168 4 O -0.300 6.300 5 C 0.339 3.661 6 C -0.200 4.200 7 C 0.012 3.988 8 C -0.216 4.216 9 C 0.563 3.437 10 O -0.553 6.553 11 N -0.593 5.593 12 C 0.112 3.888 13 C -0.124 4.124 14 C 0.048 3.952 15 C -0.511 4.511 16 H 0.055 0.945 17 C 0.061 3.939 18 N -0.891 5.891 19 Si 0.890 3.110 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.123 4.123 24 C 0.091 3.909 25 C 0.177 3.823 26 N -0.543 5.543 27 H 0.064 0.936 28 H 0.077 0.923 29 H 0.064 0.936 30 H 0.093 0.907 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.146 0.854 35 H 0.149 0.851 36 H 0.080 0.920 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.052 0.948 40 H 0.028 0.972 41 H 0.260 0.740 42 H 0.106 0.894 43 H 0.039 0.961 44 H 0.067 0.933 45 H 0.074 0.926 46 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.924 13.854 8.765 18.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.022 3.978 3 C -0.225 4.225 4 O -0.207 6.207 5 C 0.160 3.840 6 C -0.221 4.221 7 C -0.014 4.014 8 C -0.222 4.222 9 C 0.351 3.649 10 O -0.433 6.433 11 N -0.324 5.324 12 C -0.009 4.009 13 C -0.162 4.162 14 C 0.030 3.970 15 C -0.549 4.549 16 H 0.074 0.926 17 C -0.140 4.140 18 N -0.531 5.531 19 Si 0.718 3.282 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.210 1.210 23 C -0.162 4.162 24 C -0.031 4.031 25 C 0.020 3.980 26 N -0.266 5.266 27 H 0.083 0.917 28 H 0.096 0.904 29 H 0.083 0.917 30 H 0.111 0.889 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.164 0.836 35 H 0.167 0.833 36 H 0.098 0.902 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.046 0.954 41 H 0.070 0.930 42 H 0.124 0.876 43 H 0.058 0.942 44 H 0.085 0.915 45 H 0.092 0.908 46 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -8.194 14.335 8.595 18.615 hybrid contribution 0.138 -1.387 -0.033 1.394 sum -8.056 12.947 8.562 17.489 Atomic orbital electron populations 1.21908 0.92816 1.03123 1.02922 1.22404 0.94485 0.92797 0.88069 1.22213 1.02239 0.95556 1.02534 1.86255 1.31598 1.63992 1.38866 1.20018 0.85598 0.88637 0.89729 1.20977 0.98202 1.03610 0.99312 1.21435 0.91378 0.92382 0.96222 1.20807 0.98764 1.06288 0.96311 1.17923 0.85738 0.78693 0.82552 1.90731 1.51176 1.61351 1.40018 1.48149 1.14804 1.56009 1.13452 1.21739 0.82499 0.95650 1.01057 1.22013 1.01015 0.93049 1.00106 1.18647 0.90479 0.96603 0.91299 1.21235 1.28680 0.93083 1.11929 0.92629 1.24958 0.95552 0.97025 0.96447 1.69840 1.31449 1.31213 1.20556 0.86562 0.77799 0.85149 0.78653 1.19833 1.21066 1.21038 1.22026 1.02667 0.90146 1.01338 1.22478 0.90572 1.01681 0.88392 1.22975 0.88785 0.88426 0.97823 1.67314 1.10544 1.24511 1.24255 0.91728 0.90416 0.91711 0.88867 0.92099 0.91909 0.91004 0.83641 0.83306 0.90159 0.91901 0.91994 0.92885 0.95358 0.93019 0.87629 0.94218 0.91470 0.90796 0.81061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.56 37.16 0.36 -0.79 16 2 C 0.08 0.78 3.10 -26.73 -0.08 0.69 16 3 C -0.17 -1.45 9.53 37.16 0.35 -1.10 16 4 O -0.30 -3.57 9.75 -18.17 -0.18 -3.75 16 5 C 0.34 4.39 7.46 -16.96 -0.13 4.26 16 6 C -0.20 -2.37 10.02 -39.34 -0.39 -2.77 16 7 C 0.01 0.15 9.74 -38.92 -0.38 -0.23 16 8 C -0.22 -3.21 5.31 -104.82 -0.56 -3.77 16 9 C 0.56 9.83 7.39 -12.43 -0.09 9.74 16 10 O -0.55 -11.00 16.29 5.30 0.09 -10.91 16 11 N -0.59 -10.39 2.98 -173.94 -0.52 -10.91 16 12 C 0.11 1.99 6.44 -3.71 -0.02 1.96 16 13 C -0.12 -2.47 5.30 -26.61 -0.14 -2.61 16 14 C 0.05 1.12 2.06 -91.73 -0.19 0.93 16 15 C -0.51 -13.41 8.56 -34.44 -0.29 -13.70 16 16 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 17 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 18 N -0.89 -24.06 11.30 55.43 0.63 -23.44 16 19 Si 0.89 20.67 29.54 -169.99 -5.02 15.65 16 20 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 C -0.12 -2.67 5.15 -26.61 -0.14 -2.81 16 24 C 0.09 1.57 4.78 -3.69 -0.02 1.55 16 25 C 0.18 2.44 8.54 -17.14 -0.15 2.29 16 26 N -0.54 -7.37 8.61 -12.96 -0.11 -7.48 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.09 1.02 6.97 -51.93 -0.36 0.66 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.15 1.36 8.06 -52.49 -0.42 0.94 16 35 H 0.15 1.77 8.05 -52.48 -0.42 1.34 16 36 H 0.08 1.41 7.00 -51.93 -0.36 1.05 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 40 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 42 H 0.11 2.55 6.03 -51.93 -0.31 2.24 16 43 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.07 1.11 8.06 -51.93 -0.42 0.69 16 45 H 0.07 1.17 4.46 -51.93 -0.23 0.94 16 46 H 0.17 2.18 6.03 -52.48 -0.32 1.87 16 LS Contribution 368.31 15.07 5.55 5.55 Total: -1.00 -29.35 368.31 -8.57 -37.92 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -7.04 Total: 2.20 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: -1.97 Total: -4.83 kcal Atomic # 7 Polarization: -41.83 SS G_CDS: 0.00 Total: -41.83 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: -0.09 Total: -14.66 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -29.35 -8.57 -37.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543833860.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.793 kcal (2) G-P(sol) polarization free energy of solvation -29.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds