Wall clock time and date at job start Tue Mar 31 2020 14:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46941 * 2 1 4 4 O 1.42900 * 109.47143 * 119.99476 * 2 1 3 5 5 C 1.35491 * 117.00040 * 150.00035 * 4 2 1 6 6 C 1.39172 * 119.52630 * 180.02562 * 5 4 2 7 7 C 1.37956 * 119.26299 * 179.97438 * 6 5 4 8 8 C 1.40278 * 118.35891 * 359.97438 * 7 6 5 9 9 C 1.47619 * 120.49693 * 180.02562 * 8 7 6 10 10 O 1.21570 * 120.00219 * 325.03338 * 9 8 7 11 11 N 1.34779 * 119.99562 * 145.03235 * 9 8 7 12 12 C 1.46921 * 120.62813 * 174.42141 * 11 9 8 13 13 C 1.53198 * 108.89505 * 126.46099 * 12 11 9 14 14 C 1.53040 * 109.30981 * 54.56302 * 13 12 11 15 15 C 1.50699 * 109.45933 * 178.62799 * 14 13 12 16 16 H 1.07996 * 119.99653 * 0.02562 * 15 14 13 17 17 C 1.37869 * 120.00076 * 179.97438 * 15 14 13 18 18 N 1.31522 * 120.00072 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00296 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46929 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47466 * 119.99883 * 19 17 15 22 22 H 1.48499 * 109.47558 * 240.00376 * 19 17 15 23 23 C 1.53039 * 109.53825 * 298.63890 * 14 13 12 24 24 C 1.46962 * 120.65822 * 354.23985 * 11 9 8 25 25 C 1.39520 * 119.00445 * 0.27707 * 8 7 6 26 26 N 1.31672 * 120.62586 * 359.43225 * 25 8 7 27 27 H 1.08997 * 109.47692 * 300.00156 * 1 2 3 28 28 H 1.09005 * 109.46847 * 60.00339 * 1 2 3 29 29 H 1.08994 * 109.47231 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47692 * 239.99844 * 2 1 3 31 31 H 1.08998 * 109.47475 * 59.99774 * 3 2 1 32 32 H 1.09002 * 109.47313 * 179.97438 * 3 2 1 33 33 H 1.09005 * 109.47073 * 299.99522 * 3 2 1 34 34 H 1.08001 * 120.36345 * 359.95540 * 6 5 4 35 35 H 1.08003 * 120.81657 * 180.02562 * 7 6 5 36 36 H 1.09001 * 109.58825 * 6.60446 * 12 11 9 37 37 H 1.08996 * 109.58995 * 246.31968 * 12 11 9 38 38 H 1.08997 * 109.49929 * 174.51535 * 13 12 11 39 39 H 1.09000 * 109.49611 * 294.58043 * 13 12 11 40 40 H 1.09000 * 109.45629 * 58.65569 * 14 13 12 41 41 H 0.97001 * 119.99561 * 180.02562 * 18 17 15 42 42 H 1.08998 * 109.49538 * 181.32067 * 23 14 13 43 43 H 1.08998 * 109.49504 * 301.41005 * 23 14 13 44 44 H 1.08990 * 109.46897 * 113.74951 * 24 11 9 45 45 H 1.09003 * 109.70985 * 353.46081 * 24 11 9 46 46 H 1.08003 * 119.68928 * 179.72496 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6735 1.1668 5 6 3.1971 -1.3120 1.0655 6 6 3.7104 -1.9855 2.1700 7 6 4.9230 -2.6342 2.0606 8 6 5.5945 -2.5884 0.8299 9 6 6.8947 -3.2665 0.6602 10 8 7.6832 -3.3092 1.5845 11 7 7.2076 -3.8383 -0.5195 12 6 8.5425 -4.4095 -0.7438 13 6 8.3890 -5.8582 -1.2179 14 6 7.4755 -5.8949 -2.4452 15 6 7.3492 -7.3145 -2.9347 16 1 7.8680 -8.1107 -2.4217 17 6 6.5705 -7.5970 -4.0368 18 7 5.9382 -6.6274 -4.6612 19 14 6.4133 -9.3568 -4.6432 20 1 7.2173 -10.2534 -3.7744 21 1 4.9878 -9.7706 -4.5980 22 1 6.9104 -9.4455 -6.0397 23 6 6.0916 -5.3604 -2.0693 24 6 6.2191 -3.9062 -1.6049 25 6 5.0176 -1.8880 -0.2299 26 7 3.8550 -1.2874 -0.0832 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.6766 1.9564 0.8899 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9563 -0.8901 34 1 3.1655 -1.9998 3.1024 35 1 5.3444 -3.1648 2.9016 36 1 9.1103 -4.3877 0.1864 37 1 9.0650 -3.8296 -1.5044 38 1 9.3673 -6.2607 -1.4804 39 1 7.9512 -6.4577 -0.4198 40 1 7.9021 -5.2753 -3.2340 41 1 5.3900 -6.8263 -5.4364 42 1 5.4348 -5.4087 -2.9378 43 1 5.6749 -5.9645 -1.2635 44 1 6.5499 -3.2846 -2.4368 45 1 5.2532 -3.5515 -1.2452 46 1 5.5272 -1.8418 -1.1811 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000543833860.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:17 Heat of formation + Delta-G solvation = -56.549321 kcal Electronic energy + Delta-G solvation = -26901.521164 eV Core-core repulsion = 23176.723371 eV Total energy + Delta-G solvation = -3724.797794 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.13425 -40.94360 -39.14730 -38.37513 -35.41975 -34.35840 -33.67304 -33.26497 -32.02383 -30.95703 -28.20729 -28.08087 -25.76894 -25.35997 -24.19658 -23.83942 -22.20839 -21.68323 -20.26408 -19.55830 -18.84097 -18.21899 -17.77849 -17.11115 -16.74984 -16.47829 -16.24098 -15.80807 -15.49409 -15.37634 -14.91909 -14.84060 -14.53843 -14.44497 -14.39505 -14.07447 -13.92900 -13.63270 -13.34175 -13.20831 -13.19491 -13.03181 -12.86368 -12.77272 -12.43326 -12.16065 -11.99114 -11.90243 -11.76469 -11.51800 -11.25132 -11.07492 -10.99486 -10.77002 -10.61825 -10.39722 -9.71466 -9.47735 -8.07917 -6.20403 -0.31329 0.09167 1.39969 1.43698 1.53208 1.64172 1.89707 2.01837 2.44227 2.65668 3.09059 3.19088 3.41953 3.71753 3.88048 3.94843 4.00869 4.03930 4.07389 4.26651 4.28886 4.34806 4.42064 4.54282 4.56099 4.66818 4.68941 4.71941 4.82991 4.85929 4.86339 4.92926 4.95222 4.99665 5.19405 5.20728 5.24033 5.27265 5.31185 5.41747 5.53189 5.64710 5.99149 6.11616 6.14220 6.38501 6.41545 6.62091 6.89021 7.04933 7.47283 8.95603 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.014015 B = 0.003321 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.353463 B = 8430.267505 C = 9808.302546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.070 3.930 3 C -0.163 4.163 4 O -0.303 6.303 5 C 0.333 3.667 6 C -0.192 4.192 7 C 0.011 3.989 8 C -0.234 4.234 9 C 0.566 3.434 10 O -0.580 6.580 11 N -0.596 5.596 12 C 0.117 3.883 13 C -0.114 4.114 14 C 0.046 3.954 15 C -0.533 4.533 16 H 0.046 0.954 17 C 0.018 3.982 18 N -0.910 5.910 19 Si 0.947 3.053 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.280 1.280 23 C -0.114 4.114 24 C 0.105 3.895 25 C 0.177 3.823 26 N -0.550 5.550 27 H 0.071 0.929 28 H 0.096 0.904 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.045 0.955 33 H 0.089 0.911 34 H 0.173 0.827 35 H 0.159 0.841 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.040 0.960 40 H 0.009 0.991 41 H 0.261 0.739 42 H 0.080 0.920 43 H 0.023 0.977 44 H 0.080 0.920 45 H 0.093 0.907 46 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.034 14.827 9.329 19.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.014 3.986 3 C -0.221 4.221 4 O -0.210 6.210 5 C 0.155 3.845 6 C -0.212 4.212 7 C -0.015 4.015 8 C -0.240 4.240 9 C 0.356 3.644 10 O -0.461 6.461 11 N -0.326 5.326 12 C -0.004 4.004 13 C -0.153 4.153 14 C 0.027 3.973 15 C -0.571 4.571 16 H 0.065 0.935 17 C -0.181 4.181 18 N -0.550 5.550 19 Si 0.773 3.227 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.206 1.206 23 C -0.153 4.153 24 C -0.017 4.017 25 C 0.020 3.980 26 N -0.273 5.273 27 H 0.090 0.910 28 H 0.115 0.885 29 H 0.078 0.922 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.064 0.936 33 H 0.108 0.892 34 H 0.191 0.809 35 H 0.177 0.823 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.058 0.942 40 H 0.027 0.973 41 H 0.070 0.930 42 H 0.099 0.901 43 H 0.042 0.958 44 H 0.098 0.902 45 H 0.110 0.890 46 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -9.315 15.316 9.159 20.131 hybrid contribution 0.423 -1.658 -0.198 1.722 sum -8.892 13.659 8.961 18.599 Atomic orbital electron populations 1.21916 0.90926 1.03224 1.04228 1.22646 0.95950 0.93074 0.86883 1.22184 1.01090 0.94985 1.03796 1.86264 1.30998 1.63884 1.39868 1.20310 0.85860 0.88518 0.89851 1.21237 0.97636 1.02297 1.00057 1.21607 0.91657 0.92352 0.95846 1.20690 0.98118 1.07541 0.97658 1.18239 0.86288 0.78140 0.81757 1.90711 1.52236 1.62494 1.40694 1.48156 1.14653 1.56147 1.13684 1.21666 0.82986 0.94193 1.01601 1.21862 1.00390 0.94755 0.98246 1.18614 0.91880 0.94839 0.91939 1.21568 1.28788 0.94435 1.12336 0.93532 1.25610 0.95405 1.00354 0.96713 1.69945 1.31707 1.32601 1.20748 0.85678 0.77683 0.81193 0.78109 1.19741 1.20763 1.20616 1.21792 1.01005 0.92797 0.99727 1.22318 0.91724 0.98813 0.88852 1.23036 0.88864 0.88268 0.97878 1.67345 1.10448 1.24707 1.24845 0.90993 0.88538 0.92216 0.90191 0.91385 0.93602 0.89217 0.80911 0.82310 0.89773 0.90306 0.91452 0.94161 0.97294 0.92951 0.90128 0.95811 0.90190 0.88954 0.80351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.56 71.98 0.69 -1.21 16 2 C 0.07 1.27 3.10 30.59 0.09 1.37 16 3 C -0.16 -2.53 9.53 71.98 0.69 -1.85 16 4 O -0.30 -6.68 9.75 -87.92 -0.86 -7.54 16 5 C 0.33 8.08 7.46 84.83 0.63 8.72 16 6 C -0.19 -4.14 10.02 22.43 0.22 -3.91 16 7 C 0.01 0.27 9.74 22.70 0.22 0.49 16 8 C -0.23 -6.71 5.31 -20.00 -0.11 -6.81 16 9 C 0.57 19.31 7.39 86.72 0.64 19.95 16 10 O -0.58 -22.67 16.29 -3.94 -0.06 -22.74 16 11 N -0.60 -20.45 2.98 -822.50 -2.45 -22.91 16 12 C 0.12 4.07 6.44 86.37 0.56 4.63 16 13 C -0.11 -4.59 5.30 30.67 0.16 -4.43 16 14 C 0.05 2.16 2.06 -11.51 -0.02 2.13 16 15 C -0.53 -28.44 8.56 25.60 0.22 -28.22 16 16 H 0.05 2.50 7.74 -2.91 -0.02 2.48 16 17 C 0.02 0.97 5.30 84.65 0.45 1.42 16 18 N -0.91 -49.65 11.30 21.45 0.24 -49.41 16 19 Si 0.95 42.60 29.54 68.60 2.03 44.63 16 20 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 21 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 22 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 23 C -0.11 -5.03 5.15 30.67 0.16 -4.87 16 24 C 0.10 3.57 4.78 86.35 0.41 3.98 16 25 C 0.18 4.67 8.54 85.03 0.73 5.39 16 26 N -0.55 -14.26 8.61 -307.82 -2.65 -16.91 16 27 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.10 0.89 8.14 -2.38 -0.02 0.87 16 29 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.08 1.67 6.97 -2.39 -0.02 1.65 16 31 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 34 H 0.17 2.71 8.06 -2.91 -0.02 2.69 16 35 H 0.16 3.52 8.05 -2.91 -0.02 3.50 16 36 H 0.08 2.89 7.00 -2.39 -0.02 2.87 16 37 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 38 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 39 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 41 H 0.26 13.60 8.31 -92.71 -0.77 12.83 16 42 H 0.08 3.97 6.03 -2.39 -0.01 3.96 16 43 H 0.02 1.07 8.14 -2.39 -0.02 1.06 16 44 H 0.08 2.55 8.06 -2.39 -0.02 2.53 16 45 H 0.09 2.84 4.46 -2.39 -0.01 2.83 16 46 H 0.18 4.33 6.03 -2.91 -0.02 4.31 16 Total: -1.00 -62.75 368.31 2.96 -59.79 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: 0.97 Total: 18.32 kcal Atomic # 6 Polarization: -8.97 SS G_CDS: 5.74 Total: -3.22 kcal Atomic # 7 Polarization: -84.37 SS G_CDS: -4.86 Total: -89.23 kcal Atomic # 8 Polarization: -29.35 SS G_CDS: -0.92 Total: -30.27 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -62.75 2.96 -59.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543833860.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.238 kcal (2) G-P(sol) polarization free energy of solvation -62.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds