Wall clock time and date at job start Tue Mar 31 2020 14:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46949 * 2 1 4 4 O 1.42902 * 109.47017 * 180.02562 * 3 2 1 5 5 C 1.35651 * 116.99945 * 179.97438 * 4 3 2 6 6 C 1.39341 * 120.54127 * 0.25290 * 5 4 3 7 7 C 1.38293 * 118.43905 * 180.19246 * 6 5 4 8 8 C 1.38763 * 119.44621 * 359.53772 * 7 6 5 9 9 N 1.31375 * 121.06818 * 0.24423 * 8 7 6 10 10 C 1.32861 * 121.69347 * 0.02562 * 9 8 7 11 11 C 1.47826 * 119.78087 * 179.97438 * 10 9 8 12 12 O 1.21555 * 119.99941 * 187.58930 * 11 10 9 13 13 N 1.34774 * 120.00328 * 7.59550 * 11 10 9 14 14 C 1.46925 * 120.62973 * 7.61609 * 13 11 10 15 15 C 1.53623 * 108.54546 * 126.37012 * 14 13 11 16 16 C 1.53042 * 109.24033 * 54.85877 * 15 14 13 17 17 C 1.50706 * 109.44921 * 178.50017 * 16 15 14 18 18 H 1.07997 * 120.00101 * 120.05802 * 17 16 15 19 19 C 1.37876 * 119.99330 * 300.05902 * 17 16 15 20 20 N 1.31509 * 120.00827 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99401 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47402 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47092 * 119.99943 * 21 19 17 24 24 H 1.48505 * 109.46908 * 239.99848 * 21 19 17 25 25 C 1.53043 * 109.53674 * 298.51120 * 16 15 14 26 26 C 1.46926 * 120.63409 * 187.89803 * 13 11 10 27 27 H 1.09000 * 109.46953 * 299.99731 * 1 2 3 28 28 H 1.08996 * 109.47241 * 60.00100 * 1 2 3 29 29 H 1.08994 * 109.46747 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46953 * 240.00269 * 2 1 3 31 31 H 1.09001 * 109.47434 * 120.00323 * 2 1 3 32 32 H 1.08992 * 109.47335 * 60.00125 * 3 2 1 33 33 H 1.08996 * 109.47067 * 300.00006 * 3 2 1 34 34 H 1.08002 * 120.77970 * 0.02562 * 6 5 4 35 35 H 1.08006 * 120.27611 * 179.80925 * 7 6 5 36 36 H 1.08002 * 119.46784 * 180.22667 * 8 7 6 37 37 H 1.09007 * 109.58909 * 246.20232 * 14 13 11 38 38 H 1.08997 * 109.58831 * 6.62491 * 14 13 11 39 39 H 1.09003 * 109.63392 * 294.86857 * 15 14 13 40 40 H 1.08999 * 109.43403 * 174.72562 * 15 14 13 41 41 H 1.08994 * 109.46198 * 58.53071 * 16 15 14 42 42 H 0.96995 * 120.00465 * 179.97438 * 20 19 17 43 43 H 1.08999 * 109.49778 * 301.41375 * 25 16 15 44 44 H 1.08995 * 109.49575 * 181.32112 * 25 16 15 45 45 H 1.08999 * 109.58507 * 353.37197 * 26 13 11 46 46 H 1.09002 * 109.58803 * 113.65221 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 3.4690 1.4426 -0.0006 5 6 4.0848 2.6512 -0.0012 6 6 3.3370 3.8270 0.0040 7 6 4.0095 5.0353 -0.0009 8 6 5.3971 5.0437 -0.0011 9 7 6.0819 3.9225 -0.0015 10 6 5.4810 2.7376 -0.0022 11 6 6.2931 1.5024 -0.0032 12 8 5.7552 0.4214 -0.1429 13 7 7.6301 1.5748 0.1509 14 6 8.2770 2.8507 0.4862 15 6 9.1440 2.6449 1.7376 16 6 10.1196 1.4917 1.4910 17 6 10.9976 1.3097 2.7023 18 1 10.9960 0.3697 3.2341 19 6 11.8030 2.3432 3.1314 20 7 11.8047 3.4880 2.4842 21 14 12.8919 2.1173 4.6323 22 1 12.7069 0.7482 5.1766 23 1 14.3130 2.3092 4.2462 24 1 12.5211 3.1154 5.6676 25 6 9.3346 0.2037 1.2322 26 6 8.4691 0.3808 -0.0193 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.6767 1.9564 0.8899 33 1 1.6766 1.9564 -0.8900 34 1 2.2574 3.7953 0.0091 35 1 3.4594 5.9647 -0.0002 36 1 5.9228 5.9872 -0.0013 37 1 8.9026 3.1732 -0.3462 38 1 7.5158 3.6045 0.6873 39 1 8.5070 2.4067 2.5894 40 1 9.7038 3.5569 1.9449 41 1 10.7395 1.7196 0.6240 42 1 12.3710 4.2152 2.7863 43 1 8.6958 -0.0114 2.0888 44 1 10.0299 -0.6217 1.0799 45 1 7.8347 -0.4957 -0.1519 46 1 9.1082 0.5048 -0.8936 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000555680496.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:25 Heat of formation + Delta-G solvation = -46.766054 kcal Electronic energy + Delta-G solvation = -27153.081813 eV Core-core repulsion = 23428.708254 eV Total energy + Delta-G solvation = -3724.373559 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.11865 -40.50741 -39.36215 -38.28835 -35.35972 -34.88629 -33.81676 -32.68966 -31.68528 -31.35185 -28.15675 -27.60765 -26.00569 -24.38583 -24.24802 -23.56797 -22.47164 -21.71419 -20.37581 -19.08818 -18.69954 -18.22982 -17.78636 -17.41528 -16.88636 -16.44771 -16.34384 -16.13483 -15.46266 -15.20465 -15.15100 -14.95099 -14.59594 -14.49469 -14.40393 -14.08234 -13.83798 -13.59614 -13.22046 -13.11547 -12.96971 -12.87012 -12.76933 -12.51562 -12.43013 -12.13335 -11.97385 -11.88199 -11.62875 -11.52666 -11.21183 -11.00031 -10.98048 -10.82322 -10.44118 -9.78130 -9.62460 -9.34291 -8.06144 -6.20419 -0.35291 0.21629 1.39915 1.41775 1.53145 1.76274 1.99848 2.12363 2.44180 2.80131 3.16097 3.20259 3.54983 3.69255 3.91861 3.95335 3.98807 4.07191 4.19835 4.26243 4.31295 4.41534 4.44872 4.52345 4.53795 4.57377 4.64291 4.76823 4.83938 4.89876 4.98027 5.01559 5.13212 5.16472 5.17579 5.20356 5.28658 5.33859 5.44784 5.53083 5.65077 5.77373 5.99127 6.14658 6.26564 6.40088 6.51037 6.76032 6.88870 7.19661 7.46531 8.97522 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018363 B = 0.003208 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.399448 B = 8725.313404 C = 9505.504337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.125 4.125 3 C 0.043 3.957 4 O -0.306 6.306 5 C 0.128 3.872 6 C -0.167 4.167 7 C -0.083 4.083 8 C 0.047 3.953 9 N -0.433 5.433 10 C 0.005 3.995 11 C 0.557 3.443 12 O -0.566 6.566 13 N -0.589 5.589 14 C 0.082 3.918 15 C -0.110 4.110 16 C 0.045 3.955 17 C -0.535 4.535 18 H 0.046 0.954 19 C 0.015 3.985 20 N -0.912 5.912 21 Si 0.953 3.047 22 H -0.273 1.273 23 H -0.278 1.278 24 H -0.279 1.279 25 C -0.111 4.111 26 C 0.115 3.885 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.182 0.818 35 H 0.193 0.807 36 H 0.196 0.804 37 H 0.049 0.951 38 H 0.155 0.845 39 H 0.015 0.985 40 H 0.078 0.922 41 H 0.001 0.999 42 H 0.262 0.738 43 H 0.037 0.963 44 H 0.066 0.934 45 H 0.080 0.920 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.111 5.140 -6.799 25.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.162 4.162 3 C -0.032 4.032 4 O -0.217 6.217 5 C 0.077 3.923 6 C -0.193 4.193 7 C -0.102 4.102 8 C -0.114 4.114 9 N -0.145 5.145 10 C -0.130 4.130 11 C 0.346 3.654 12 O -0.446 6.446 13 N -0.320 5.320 14 C -0.040 4.040 15 C -0.149 4.149 16 C 0.026 3.974 17 C -0.574 4.574 18 H 0.065 0.935 19 C -0.184 4.184 20 N -0.551 5.551 21 Si 0.778 3.222 22 H -0.197 1.197 23 H -0.204 1.204 24 H -0.205 1.205 25 C -0.149 4.149 26 C -0.008 4.008 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.199 0.801 35 H 0.210 0.790 36 H 0.213 0.787 37 H 0.067 0.933 38 H 0.170 0.830 39 H 0.034 0.966 40 H 0.096 0.904 41 H 0.019 0.981 42 H 0.071 0.929 43 H 0.056 0.944 44 H 0.085 0.915 45 H 0.098 0.902 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -23.325 4.473 -6.875 24.725 hybrid contribution 0.373 -0.275 0.877 0.992 sum -22.952 4.198 -5.998 24.091 Atomic orbital electron populations 1.21654 0.91850 1.03200 1.03101 1.21491 0.97659 0.94330 1.02752 1.23333 0.76651 1.00067 1.03106 1.86379 1.23180 1.25695 1.86446 1.20122 0.91590 0.86958 0.93618 1.22180 1.02548 0.90559 1.04053 1.22713 0.94846 0.99786 0.92862 1.23613 0.93120 0.96605 0.98057 1.67502 1.38688 0.98243 1.10067 1.20419 0.89499 0.92339 1.10760 1.18223 0.81977 0.88162 0.77048 1.90717 1.71783 1.29419 1.52645 1.48131 1.05516 1.11504 1.66843 1.23236 0.98628 0.85669 0.96452 1.21863 0.96103 1.02140 0.94814 1.18633 0.92430 0.91286 0.95051 1.21566 1.23815 0.98835 1.13136 0.93547 1.25690 0.98081 0.95058 0.99530 1.69979 1.40053 1.03943 1.41131 0.85595 0.78745 0.78049 0.79768 1.19724 1.20387 1.20464 1.21829 0.97553 0.99630 0.95898 1.21641 0.92986 0.87995 0.98152 0.91382 0.91196 0.91380 0.92064 0.92335 0.90000 0.89732 0.80102 0.78998 0.78737 0.93275 0.82974 0.96569 0.90357 0.98059 0.92882 0.94385 0.91548 0.90150 0.91181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.91 71.98 0.71 -0.73 16 2 C -0.12 -2.16 6.30 30.60 0.19 -1.96 16 3 C 0.04 0.74 4.76 71.98 0.34 1.09 16 4 O -0.31 -8.97 8.23 -68.80 -0.57 -9.53 16 5 C 0.13 3.55 6.70 22.93 0.15 3.70 16 6 C -0.17 -2.75 9.13 22.55 0.21 -2.55 16 7 C -0.08 -1.08 10.10 22.41 0.23 -0.85 16 8 C 0.05 0.92 11.17 84.89 0.95 1.87 16 9 N -0.43 -13.06 6.06 -184.63 -1.12 -14.18 16 10 C 0.01 0.17 6.62 41.92 0.28 0.45 16 11 C 0.56 23.41 7.65 86.78 0.66 24.07 16 12 O -0.57 -26.03 14.61 16.97 0.25 -25.78 16 13 N -0.59 -25.14 2.97 -821.50 -2.44 -27.58 16 14 C 0.08 3.48 5.94 86.51 0.51 4.00 16 15 C -0.11 -5.55 5.17 30.82 0.16 -5.39 16 16 C 0.04 2.36 2.06 -11.51 -0.02 2.33 16 17 C -0.54 -30.76 8.56 25.60 0.22 -30.54 16 18 H 0.05 2.66 7.74 -2.91 -0.02 2.64 16 19 C 0.02 0.86 5.30 84.66 0.45 1.31 16 20 N -0.91 -52.74 11.30 21.45 0.24 -52.50 16 21 Si 0.95 44.57 29.54 68.60 2.03 46.59 16 22 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 23 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 24 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 25 C -0.11 -5.12 5.30 30.67 0.16 -4.96 16 26 C 0.11 4.80 6.44 86.36 0.56 5.36 16 27 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.08 1.06 7.69 -2.39 -0.02 1.04 16 33 H 0.08 1.05 7.71 -2.39 -0.02 1.03 16 34 H 0.18 1.52 6.46 -2.91 -0.02 1.50 16 35 H 0.19 0.60 8.06 -2.91 -0.02 0.58 16 36 H 0.20 2.49 8.06 -2.91 -0.02 2.47 16 37 H 0.05 2.11 8.14 -2.38 -0.02 2.09 16 38 H 0.15 5.97 3.93 -74.78 -0.29 5.68 16 39 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.08 4.29 6.03 -2.39 -0.01 4.27 16 41 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 42 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 43 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 44 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 45 H 0.08 3.30 7.00 -2.39 -0.02 3.28 16 46 H 0.07 2.75 8.14 -2.39 -0.02 2.74 16 Total: -1.00 -75.99 365.70 4.84 -71.15 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: 0.69 Total: 14.64 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: 5.76 Total: -2.81 kcal Atomic # 7 Polarization: -90.95 SS G_CDS: -3.31 Total: -94.26 kcal Atomic # 8 Polarization: -34.99 SS G_CDS: -0.32 Total: -35.31 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -75.99 4.84 -71.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000555680496.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.381 kcal (2) G-P(sol) polarization free energy of solvation -75.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds