Wall clock time and date at job start Tue Mar 31 2020 14:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.46888 * 2 1 4 4 O 1.42894 * 109.47187 * 119.99778 * 2 1 3 5 5 C 1.35426 * 116.99868 * 149.99905 * 4 2 1 6 6 N 1.32235 * 119.79941 * 0.02562 * 5 4 2 7 7 C 1.31887 * 121.79756 * 180.02562 * 6 5 4 8 8 C 1.38351 * 121.18879 * 0.02562 * 7 6 5 9 9 C 1.38344 * 119.45626 * 0.02562 * 8 7 6 10 10 C 1.39984 * 118.34941 * 359.97438 * 9 8 7 11 11 C 1.47532 * 120.59647 * 180.02562 * 10 9 8 12 12 O 1.21591 * 119.99966 * 126.90673 * 11 10 9 13 13 N 1.34772 * 119.99791 * 306.90902 * 11 10 9 14 14 C 1.46925 * 120.63327 * 3.62491 * 13 11 10 15 15 C 1.52757 * 109.00928 * 233.58354 * 14 13 11 16 16 C 1.53043 * 109.38222 * 305.58861 * 15 14 13 17 17 C 1.50705 * 109.46267 * 181.25854 * 16 15 14 18 18 H 1.07997 * 119.99953 * 275.13697 * 17 16 15 19 19 C 1.37879 * 120.00091 * 95.12824 * 17 16 15 20 20 N 1.31506 * 120.00243 * 174.78921 * 19 17 16 21 21 Si 1.86802 * 119.99851 * 354.79368 * 19 17 16 22 22 H 1.48508 * 109.46984 * 94.56137 * 21 19 17 23 23 H 1.48493 * 109.47129 * 214.55940 * 21 19 17 24 24 H 1.48499 * 109.47390 * 334.56222 * 21 19 17 25 25 C 1.53037 * 109.54163 * 61.23801 * 16 15 14 26 26 C 1.46930 * 120.62697 * 183.90005 * 13 11 10 27 27 H 1.09000 * 109.46736 * 299.99917 * 1 2 3 28 28 H 1.09001 * 109.46826 * 59.99568 * 1 2 3 29 29 H 1.08989 * 109.46858 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47251 * 240.00019 * 2 1 3 31 31 H 1.08999 * 109.47158 * 59.99962 * 3 2 1 32 32 H 1.08997 * 109.46878 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47740 * 299.99873 * 3 2 1 34 34 H 1.07997 * 119.40311 * 179.71699 * 7 6 5 35 35 H 1.08002 * 120.27343 * 180.02562 * 8 7 6 36 36 H 1.07997 * 120.82552 * 180.02562 * 9 8 7 37 37 H 1.09001 * 109.58319 * 353.41421 * 14 13 11 38 38 H 1.09000 * 109.58798 * 113.84476 * 14 13 11 39 39 H 1.09002 * 109.57149 * 185.55364 * 15 14 13 40 40 H 1.09001 * 109.36181 * 65.49405 * 15 14 13 41 41 H 1.08999 * 109.46097 * 301.21670 * 16 15 14 42 42 H 0.96997 * 120.00466 * 180.02562 * 20 19 17 43 43 H 1.08997 * 109.50313 * 178.68456 * 25 16 15 44 44 H 1.09000 * 109.52283 * 58.60341 * 25 16 15 45 45 H 1.08996 * 109.58610 * 246.15282 * 26 13 11 46 46 H 1.08994 * 109.58860 * 6.43965 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 3.1966 -1.3117 1.0654 6 7 3.8588 -1.2894 -0.0789 7 6 5.0204 -1.8976 -0.2216 8 6 5.5999 -2.5904 0.8264 9 6 4.9499 -2.6472 2.0464 10 6 3.7184 -1.9942 2.1744 11 6 2.9829 -2.0223 3.4530 12 8 2.6170 -0.9829 3.9669 13 7 2.7165 -3.2002 4.0514 14 6 3.2200 -4.4587 3.4844 15 6 2.0504 -5.4233 3.2975 16 6 1.3078 -5.5847 4.6260 17 6 0.1722 -6.5599 4.4513 18 1 -0.7809 -6.2172 4.0764 19 6 0.3501 -7.8895 4.7698 20 7 -0.6676 -8.7206 4.7154 21 14 2.0368 -8.5104 5.2788 22 1 2.1426 -8.4980 6.7601 23 1 2.2251 -9.8965 4.7807 24 1 3.0837 -7.6301 4.7005 25 6 0.7523 -4.2295 5.0698 26 6 1.9120 -3.2507 5.2798 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3632 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 5.5258 -1.8584 -1.1752 35 1 6.5519 -3.0828 0.6933 36 1 5.3823 -3.1814 2.8794 37 1 3.6883 -4.2632 2.5197 38 1 3.9489 -4.8999 4.1642 39 1 2.4256 -6.3931 2.9704 40 1 1.3691 -5.0240 2.5462 41 1 1.9958 -5.9607 5.3832 42 1 -0.5425 -9.6559 4.9398 43 1 0.2037 -4.3493 6.0039 44 1 0.0830 -3.8411 4.3021 45 1 2.5321 -3.5915 6.1089 46 1 1.5197 -2.2581 5.5008 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574714453.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:21 Heat of formation + Delta-G solvation = -40.941786 kcal Electronic energy + Delta-G solvation = -27649.631393 eV Core-core repulsion = 23925.510393 eV Total energy + Delta-G solvation = -3724.121000 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.10850 -39.45842 -38.30308 -36.94039 -33.68895 -33.40109 -32.80969 -31.43571 -30.69783 -30.09325 -27.39136 -26.67637 -24.73998 -23.98295 -22.66735 -22.45121 -21.28696 -20.27602 -18.93459 -18.40265 -17.24090 -16.94354 -16.86216 -16.00743 -15.62753 -15.43062 -14.71948 -14.51565 -14.35769 -14.15008 -13.82186 -13.51751 -13.40406 -13.21219 -12.98431 -12.81589 -12.51604 -12.46948 -12.41339 -12.33771 -12.08295 -11.97113 -11.77654 -11.07500 -11.02905 -10.90529 -10.76708 -10.52010 -10.15123 -10.10625 -9.87225 -9.73959 -9.47947 -9.31939 -9.15062 -8.63849 -8.56555 -8.16577 -6.11244 -4.10160 0.70238 1.08046 2.79062 2.91125 3.22731 3.24234 3.32229 3.33398 3.62999 4.05504 4.37431 4.58437 4.60359 4.74878 4.81389 4.85029 4.94470 5.08649 5.15162 5.24109 5.36636 5.41583 5.60184 5.61992 5.63764 5.65573 5.68173 5.73585 5.80806 5.87454 5.92915 6.00663 6.04231 6.05658 6.21150 6.27523 6.31277 6.66440 6.71207 6.80417 6.92327 7.16771 7.27755 7.40990 7.58806 7.70064 7.74723 8.39528 8.49663 8.94891 9.51827 11.02342 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015825 B = 0.003881 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.880760 B = 7212.586697 C = 7746.766426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.080 3.920 3 C -0.167 4.167 4 O -0.281 6.281 5 C 0.368 3.632 6 N -0.543 5.543 7 C 0.157 3.843 8 C -0.219 4.219 9 C -0.011 4.011 10 C -0.195 4.195 11 C 0.569 3.431 12 O -0.534 6.534 13 N -0.595 5.595 14 C 0.095 3.905 15 C -0.127 4.127 16 C 0.017 3.983 17 C -0.511 4.511 18 H 0.072 0.928 19 C 0.070 3.930 20 N -0.901 5.901 21 Si 0.875 3.125 22 H -0.279 1.279 23 H -0.289 1.289 24 H -0.261 1.261 25 C -0.116 4.116 26 C 0.110 3.890 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.089 0.911 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.162 0.838 35 H 0.143 0.857 36 H 0.146 0.854 37 H 0.074 0.926 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.057 0.943 41 H 0.032 0.968 42 H 0.263 0.737 43 H 0.070 0.930 44 H 0.056 0.944 45 H 0.062 0.938 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.344 14.459 -9.954 21.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.024 3.976 3 C -0.224 4.224 4 O -0.187 6.187 5 C 0.189 3.811 6 N -0.266 5.266 7 C 0.000 4.000 8 C -0.240 4.240 9 C -0.037 4.037 10 C -0.201 4.201 11 C 0.356 3.644 12 O -0.412 6.412 13 N -0.327 5.327 14 C -0.028 4.028 15 C -0.165 4.165 16 C -0.002 4.002 17 C -0.549 4.549 18 H 0.090 0.910 19 C -0.132 4.132 20 N -0.538 5.538 21 Si 0.703 3.297 22 H -0.205 1.205 23 H -0.216 1.216 24 H -0.186 1.186 25 C -0.155 4.155 26 C -0.012 4.012 27 H 0.086 0.914 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.107 0.893 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.180 0.820 35 H 0.161 0.839 36 H 0.164 0.836 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.050 0.950 42 H 0.073 0.927 43 H 0.089 0.911 44 H 0.075 0.925 45 H 0.080 0.920 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 11.482 15.303 -10.106 21.637 hybrid contribution 1.293 -1.103 0.663 1.824 sum 12.775 14.200 -9.443 21.308 Atomic orbital electron populations 1.21912 0.92646 1.03370 1.02985 1.22413 0.94794 0.92758 0.87672 1.22203 1.01918 0.95652 1.02634 1.86425 1.30735 1.63221 1.38304 1.19650 0.85785 0.87483 0.88229 1.67360 1.10867 1.24556 1.23861 1.22580 0.89102 0.89570 0.98775 1.21892 1.03044 1.05014 0.94018 1.21635 0.91497 0.92444 0.98113 1.19916 0.98783 1.06168 0.95207 1.17771 0.79428 0.83746 0.83482 1.90760 1.53258 1.32176 1.65004 1.48055 1.52015 1.05879 1.26761 1.22082 0.98103 0.84493 0.98078 1.22181 0.95548 0.97143 1.01640 1.19112 0.95720 0.93222 0.92180 1.20987 0.98052 0.91933 1.43902 0.91027 1.25077 0.96365 0.96889 0.94820 1.69912 1.30340 1.04488 1.49099 0.86886 0.85624 0.78129 0.79082 1.20476 1.21551 1.18572 1.21943 0.95983 0.95755 1.01791 1.21818 0.93203 1.01378 0.84794 0.91406 0.90500 0.91576 0.89299 0.91768 0.92154 0.91143 0.82036 0.83933 0.83624 0.90755 0.91755 0.91596 0.92426 0.95024 0.92695 0.91136 0.92487 0.91969 0.89814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.56 37.16 0.36 -1.26 16 2 C 0.08 0.97 3.11 -26.73 -0.08 0.89 16 3 C -0.17 -1.75 9.53 37.16 0.35 -1.40 16 4 O -0.28 -4.50 8.95 -21.93 -0.20 -4.69 16 5 C 0.37 5.58 7.46 -16.61 -0.12 5.46 16 6 N -0.54 -6.91 8.64 -12.98 -0.11 -7.03 16 7 C 0.16 1.50 11.17 -17.49 -0.20 1.31 16 8 C -0.22 -1.98 10.09 -39.50 -0.40 -2.37 16 9 C -0.01 -0.13 7.55 -38.89 -0.29 -0.42 16 10 C -0.19 -2.95 4.93 -104.69 -0.52 -3.46 16 11 C 0.57 10.15 6.90 -12.47 -0.09 10.06 16 12 O -0.53 -11.08 16.16 1.33 0.02 -11.06 16 13 N -0.59 -10.26 2.98 -174.26 -0.52 -10.78 16 14 C 0.09 1.52 5.49 -3.93 -0.02 1.50 16 15 C -0.13 -2.49 5.08 -26.83 -0.14 -2.62 16 16 C 0.02 0.37 1.61 -91.73 -0.15 0.22 16 17 C -0.51 -13.81 8.86 -34.44 -0.31 -14.11 16 18 H 0.07 2.14 8.06 -52.49 -0.42 1.72 16 19 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 20 N -0.90 -26.97 13.96 55.43 0.77 -26.20 16 21 Si 0.88 20.52 26.56 -169.99 -4.52 16.01 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.26 -5.63 6.12 56.52 0.35 -5.28 16 25 C -0.12 -2.31 5.34 -26.61 -0.14 -2.45 16 26 C 0.11 1.92 6.43 -3.71 -0.02 1.90 16 27 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.75 8.14 -51.94 -0.42 0.33 16 30 H 0.09 1.05 6.98 -51.93 -0.36 0.69 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.16 0.96 8.06 -52.49 -0.42 0.54 16 35 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 36 H 0.15 1.41 7.36 -52.49 -0.39 1.02 16 37 H 0.07 1.04 4.71 -51.93 -0.24 0.80 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.07 1.32 7.17 -51.93 -0.37 0.94 16 40 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.03 0.70 5.60 -51.93 -0.29 0.41 16 42 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 43 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 44 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 45 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.08 1.48 7.02 -51.93 -0.36 1.12 16 LS Contribution 367.02 15.07 5.53 5.53 Total: -1.00 -33.11 367.02 -8.01 -41.12 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -7.13 Total: 2.01 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: -1.86 Total: -4.91 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: 0.14 Total: -44.01 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: -0.17 Total: -15.75 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.52 Total: 16.01 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.11 -8.01 -41.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574714453.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.181 kcal (2) G-P(sol) polarization free energy of solvation -33.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds