Wall clock time and date at job start Tue Mar 31 2020 14:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35982 * 117.00282 * 2 1 4 4 C 1.38710 * 119.96946 * 0.02562 * 3 2 1 5 5 C 1.38268 * 120.12051 * 179.77257 * 4 3 2 6 6 C 1.38472 * 120.07033 * 0.46178 * 5 4 3 7 7 O 1.36095 * 120.02831 * 179.79592 * 6 5 4 8 8 C 1.42904 * 116.99570 * 5.48246 * 7 6 5 9 9 C 1.53000 * 109.46783 * 155.01023 * 8 7 6 10 10 C 1.52997 * 109.46841 * 275.00980 * 8 7 6 11 11 C 1.39300 * 119.94846 * 359.51492 * 6 5 4 12 12 N 1.39951 * 120.06164 * 180.27515 * 11 6 5 13 13 C 1.46497 * 120.00261 * 179.97438 * 12 11 6 14 14 C 1.52994 * 109.47315 * 179.97438 * 13 12 11 15 15 H 1.09005 * 109.47054 * 55.00691 * 14 13 12 16 16 C 1.47199 * 109.47224 * 295.00275 * 14 13 12 17 17 N 7.83941 * 151.90440 * 322.89840 * 2 1 3 18 18 C 1.53005 * 109.47128 * 175.00131 * 14 13 12 19 19 C 1.50698 * 109.47064 * 185.00152 * 18 14 13 20 20 H 1.08007 * 120.00277 * 0.02562 * 19 18 14 21 21 C 1.37879 * 119.99900 * 180.02562 * 19 18 14 22 22 N 1.31511 * 120.00069 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99964 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47156 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.47240 * 119.99911 * 23 21 19 26 26 H 1.48501 * 109.47165 * 240.00007 * 23 21 19 27 27 C 1.38632 * 119.97811 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.47414 * 300.00149 * 1 2 3 29 29 H 1.09000 * 109.47128 * 60.00271 * 1 2 3 30 30 H 1.09003 * 109.47399 * 180.02562 * 1 2 3 31 31 H 1.08003 * 119.93760 * 0.02562 * 4 3 2 32 32 H 1.07997 * 119.96328 * 180.23508 * 5 4 3 33 33 H 1.08998 * 109.47013 * 35.00753 * 8 7 6 34 34 H 1.09003 * 109.47250 * 60.00425 * 9 8 7 35 35 H 1.09000 * 109.46949 * 180.02562 * 9 8 7 36 36 H 1.09000 * 109.47078 * 299.99667 * 9 8 7 37 37 H 1.09003 * 109.47581 * 299.99813 * 10 8 7 38 38 H 1.08995 * 109.47807 * 60.00269 * 10 8 7 39 39 H 1.09000 * 109.46729 * 180.02562 * 10 8 7 40 40 H 0.97003 * 120.00010 * 0.02562 * 12 11 6 41 41 H 1.09003 * 109.47273 * 300.00389 * 13 12 11 42 42 H 1.09002 * 109.46757 * 60.00383 * 13 12 11 43 43 H 1.08997 * 109.47057 * 305.00184 * 18 14 13 44 44 H 1.08998 * 109.46865 * 65.00100 * 18 14 13 45 45 H 0.96997 * 119.99802 * 179.97438 * 22 21 19 46 46 H 1.08004 * 120.03994 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2903 2.3745 0.0005 5 6 1.9148 3.6081 0.0053 6 6 3.2974 3.6859 -0.0001 7 8 3.9112 4.9006 0.0003 8 6 3.0730 6.0509 0.1282 9 6 3.8808 7.2071 0.7211 10 6 2.5441 6.4522 -1.2502 11 6 4.0595 2.5199 -0.0002 12 7 5.4569 2.5957 0.0002 13 6 6.2572 1.3686 0.0007 14 6 7.7440 1.7293 0.0003 15 1 7.9582 2.3882 0.8419 16 6 8.0824 2.4144 -1.2578 17 7 8.3446 2.9446 -2.2271 18 6 8.5784 0.4531 0.1266 19 6 10.0359 0.8160 0.2498 20 1 10.3369 1.8532 0.2395 21 6 10.9851 -0.1761 0.3756 22 7 10.6186 -1.4391 0.3876 23 14 12.7916 0.2738 0.5290 24 1 12.9390 1.7509 0.4892 25 1 13.3225 -0.2416 1.8167 26 1 13.5495 -0.3304 -0.5961 27 6 3.4308 1.2835 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 0.2118 2.3163 0.0014 32 1 1.3237 4.5120 0.0095 33 1 2.2349 5.8185 0.7854 34 1 4.7188 7.4394 0.0639 35 1 3.2413 8.0844 0.8191 36 1 4.2575 6.9211 1.7031 37 1 3.3821 6.6846 -1.9074 38 1 1.9686 5.6286 -1.6726 39 1 1.9051 7.3299 -1.1527 40 1 5.8957 3.4609 0.0008 41 1 6.0250 0.7838 0.8908 42 1 6.0255 0.7834 -0.8893 43 1 8.2655 -0.0995 1.0125 44 1 8.4317 -0.1659 -0.7585 45 1 11.2865 -2.1370 0.4757 46 1 4.0193 0.3779 -0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000582601325.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:11 Heat of formation + Delta-G solvation = -35.597027 kcal Electronic energy + Delta-G solvation = -26123.900558 eV Core-core repulsion = 22400.011324 eV Total energy + Delta-G solvation = -3723.889234 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.56636 -39.12854 -37.79693 -36.51136 -34.78952 -33.58220 -33.13688 -31.75343 -30.11377 -28.57445 -27.61240 -27.01455 -26.35667 -24.15492 -22.73983 -21.96924 -21.42243 -20.72223 -18.60311 -17.73709 -17.20278 -16.61947 -16.36012 -15.80042 -15.51623 -15.41052 -14.98068 -14.79504 -14.61364 -14.43350 -13.84791 -13.55241 -13.36134 -13.05148 -12.84472 -12.73490 -12.58700 -12.50067 -12.42378 -12.22029 -12.14823 -11.97984 -11.93727 -11.42005 -11.30040 -11.17351 -11.12097 -10.78687 -10.69096 -10.55567 -10.47661 -10.32293 -9.84107 -9.65942 -9.27603 -8.48650 -8.10668 -7.03274 -6.12409 -4.15982 1.43807 1.63622 3.15442 3.18179 3.27130 3.35533 3.39649 3.53258 3.58916 3.74937 3.85262 4.38964 4.57201 4.67846 4.71331 4.75545 4.88519 4.98377 5.01911 5.03152 5.18516 5.25828 5.29268 5.33153 5.34303 5.47450 5.48026 5.53323 5.57881 5.63500 5.76125 5.87010 5.92796 5.94317 6.01482 6.24708 6.30863 6.37537 6.39572 6.55628 7.17257 7.36575 7.38270 7.46839 7.64722 7.82249 7.90381 8.18252 8.36920 8.88324 9.49813 10.98427 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012130 B = 0.003135 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.741201 B = 8929.828990 C =10779.446955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.317 6.317 3 C 0.142 3.858 4 C -0.238 4.238 5 C -0.127 4.127 6 C 0.021 3.979 7 O -0.313 6.313 8 C 0.083 3.917 9 C -0.149 4.149 10 C -0.180 4.180 11 C 0.242 3.758 12 N -0.736 5.736 13 C 0.129 3.871 14 C -0.002 4.002 15 H 0.108 0.892 16 C 0.239 3.761 17 N -0.467 5.467 18 C 0.034 3.966 19 C -0.528 4.528 20 H 0.057 0.943 21 C 0.063 3.937 22 N -0.889 5.889 23 Si 0.892 3.108 24 H -0.272 1.272 25 H -0.282 1.282 26 H -0.283 1.283 27 C -0.203 4.203 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.096 0.904 31 H 0.122 0.878 32 H 0.127 0.873 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.406 0.594 41 H 0.082 0.918 42 H 0.067 0.933 43 H 0.043 0.957 44 H 0.029 0.971 45 H 0.263 0.737 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.037 10.285 2.588 25.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.231 6.231 3 C 0.096 3.904 4 C -0.259 4.259 5 C -0.147 4.147 6 C -0.027 4.027 7 O -0.229 6.229 8 C 0.026 3.974 9 C -0.206 4.206 10 C -0.238 4.238 11 C 0.136 3.864 12 N -0.365 5.365 13 C 0.004 3.996 14 C -0.024 4.024 15 H 0.126 0.874 16 C -0.079 4.079 17 N -0.143 5.143 18 C -0.005 4.005 19 C -0.566 4.566 20 H 0.076 0.924 21 C -0.139 4.139 22 N -0.528 5.528 23 Si 0.720 3.280 24 H -0.197 1.197 25 H -0.208 1.208 26 H -0.210 1.210 27 C -0.227 4.227 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.114 0.886 31 H 0.140 0.860 32 H 0.145 0.855 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.242 0.758 41 H 0.100 0.900 42 H 0.085 0.915 43 H 0.061 0.939 44 H 0.047 0.953 45 H 0.072 0.928 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -22.160 10.582 1.118 24.582 hybrid contribution 0.631 0.436 0.399 0.865 sum -21.529 11.018 1.518 24.232 Atomic orbital electron populations 1.22984 0.78858 1.03527 1.01100 1.86075 1.20928 1.27090 1.88961 1.18528 0.91518 0.83857 0.96476 1.20664 0.99355 0.91550 1.14314 1.20703 0.92496 0.98007 1.03484 1.18260 0.90781 0.84292 1.09336 1.86058 1.35755 1.11623 1.89435 1.22289 0.93436 0.84894 0.96755 1.21852 1.00878 0.96185 1.01734 1.22385 1.01995 1.01953 0.97438 1.16817 0.83866 0.90283 0.95410 1.44806 1.01642 1.09100 1.80923 1.21584 0.88716 0.86655 1.02627 1.19470 0.93977 1.00490 0.88475 0.87428 1.29062 0.91961 0.92325 0.94511 1.81010 1.09851 1.11239 1.12218 1.19163 0.93624 0.88645 0.99064 1.21146 0.91188 0.93100 1.51186 0.92431 1.24947 0.99163 0.94926 0.94882 1.69941 1.34016 0.99132 1.49694 0.86530 0.85052 0.78733 0.77727 1.19698 1.20801 1.20952 1.19630 0.91735 0.96465 1.14880 0.92887 0.92914 0.88566 0.85993 0.85509 0.91291 0.91470 0.90844 0.91609 0.91475 0.91875 0.91408 0.75815 0.89975 0.91475 0.93929 0.95274 0.92768 0.84215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.32 -3.88 10.50 -19.68 -0.21 -4.09 16 3 C 0.14 1.84 6.68 -39.26 -0.26 1.58 16 4 C -0.24 -2.69 9.03 -39.40 -0.36 -3.05 16 5 C -0.13 -1.45 8.24 -39.48 -0.33 -1.78 16 6 C 0.02 0.28 6.62 -39.10 -0.26 0.02 16 7 O -0.31 -4.00 9.04 -20.04 -0.18 -4.18 16 8 C 0.08 0.78 2.85 -26.73 -0.08 0.70 16 9 C -0.15 -1.19 9.56 37.16 0.36 -0.84 16 10 C -0.18 -1.52 9.17 37.16 0.34 -1.17 16 11 C 0.24 3.45 6.67 -83.58 -0.56 2.90 16 12 N -0.74 -10.63 5.52 -58.51 -0.32 -10.95 16 13 C 0.13 1.93 4.28 -4.05 -0.02 1.91 16 14 C 0.00 -0.04 2.26 -93.41 -0.21 -0.25 16 15 H 0.11 1.78 8.14 -51.93 -0.42 1.35 16 16 C 0.24 4.83 13.45 -20.78 -0.28 4.56 16 17 N -0.47 -10.33 18.53 42.13 0.78 -9.55 16 18 C 0.03 0.76 4.42 -27.88 -0.12 0.64 16 19 C -0.53 -13.84 8.60 -34.44 -0.30 -14.14 16 20 H 0.06 1.51 7.59 -52.48 -0.40 1.11 16 21 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 22 N -0.89 -25.21 13.29 55.43 0.74 -24.48 16 23 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 24 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 27 C -0.20 -2.84 9.25 -39.27 -0.36 -3.21 16 28 H 0.05 0.35 7.66 -51.93 -0.40 -0.04 16 29 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 30 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.12 1.08 6.28 -52.48 -0.33 0.75 16 32 H 0.13 1.16 5.42 -52.49 -0.28 0.87 16 33 H 0.07 0.58 6.31 -51.93 -0.33 0.25 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.56 6.91 -51.93 -0.36 0.20 16 39 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.41 5.92 7.57 -40.82 -0.31 5.61 16 41 H 0.08 1.13 7.95 -51.93 -0.41 0.72 16 42 H 0.07 1.03 7.95 -51.93 -0.41 0.61 16 43 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 46 H 0.14 1.92 6.74 -52.48 -0.35 1.56 16 LS Contribution 383.72 15.07 5.78 5.78 Total: -1.00 -31.10 383.72 -6.89 -37.99 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -6.92 Total: 2.61 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: -1.54 Total: -9.28 kcal Atomic # 7 Polarization: -46.17 SS G_CDS: 1.19 Total: -44.97 kcal Atomic # 8 Polarization: -7.88 SS G_CDS: -0.39 Total: -8.27 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.10 -6.89 -37.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582601325.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.389 kcal (2) G-P(sol) polarization free energy of solvation -31.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds