Wall clock time and date at job start Tue Mar 31 2020 14:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52993 * 109.47024 * 2 1 4 4 O 1.42906 * 109.46950 * 240.00368 * 2 1 3 5 5 C 1.36017 * 116.99694 * 274.82563 * 4 2 1 6 6 C 1.38027 * 120.01216 * 4.96944 * 5 4 2 7 7 C 1.39817 * 119.87243 * 179.81415 * 6 5 4 8 8 C 1.47519 * 120.05637 * 180.21042 * 7 6 5 9 9 N 1.34778 * 119.99879 * 180.23408 * 8 7 6 10 10 O 1.21595 * 120.00132 * 0.23217 * 8 7 6 11 11 C 1.39756 * 119.88863 * 0.44581 * 7 6 5 12 12 C 1.37718 * 120.01848 * 359.78389 * 11 7 6 13 13 C 1.39039 * 120.12856 * 0.02562 * 12 11 7 14 14 N 1.39304 * 119.94523 * 180.02562 * 13 12 11 15 15 C 1.46499 * 119.99633 * 4.81043 * 14 13 12 16 16 C 1.53000 * 109.46916 * 175.97179 * 15 14 13 17 17 C 1.50702 * 115.54755 * 39.65775 * 16 15 14 18 18 H 1.07996 * 119.99803 * 268.46807 * 17 16 15 19 19 C 1.37876 * 120.00201 * 88.47626 * 17 16 15 20 20 N 1.31514 * 119.99957 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 120.00049 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.46920 * 91.47977 * 21 19 17 23 23 H 1.48502 * 109.47254 * 211.48255 * 21 19 17 24 24 H 1.48501 * 109.47299 * 331.48409 * 21 19 17 25 25 C 1.52995 * 117.49958 * 253.94685 * 16 15 14 26 26 C 1.53001 * 60.00319 * 252.51123 * 25 16 15 27 27 H 1.08995 * 109.47220 * 59.99928 * 1 2 3 28 28 H 1.08996 * 109.46992 * 299.99444 * 1 2 3 29 29 H 1.09001 * 109.46804 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47220 * 120.00072 * 2 1 3 31 31 H 1.09004 * 109.46964 * 60.00220 * 3 2 1 32 32 H 1.08997 * 109.47162 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47489 * 300.00536 * 3 2 1 34 34 H 1.08001 * 120.06191 * 0.02562 * 6 5 4 35 35 H 0.96996 * 120.00351 * 359.97438 * 9 8 7 36 36 H 0.97003 * 120.00273 * 180.02562 * 9 8 7 37 37 H 1.07997 * 119.99075 * 179.76958 * 11 7 6 38 38 H 1.07992 * 119.93454 * 179.97438 * 12 11 7 39 39 H 0.96994 * 120.00319 * 184.80787 * 14 13 12 40 40 H 1.08997 * 109.47325 * 295.96931 * 15 14 13 41 41 H 1.08998 * 109.47627 * 55.97496 * 15 14 13 42 42 H 0.96999 * 119.99792 * 179.97438 * 20 19 17 43 43 H 1.08999 * 117.50033 * 0.02562 * 25 16 15 44 44 H 1.09005 * 117.49905 * 145.02405 * 25 16 15 45 45 H 1.08996 * 117.49864 * 252.51615 * 26 25 16 46 46 H 1.09002 * 117.52065 * 107.47751 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0064 -0.6736 -1.1669 5 6 2.1161 -2.0275 -1.0967 6 6 1.6780 -2.6983 0.0272 7 6 1.7885 -4.0905 0.0946 8 6 1.3174 -4.8120 1.2920 9 7 1.4288 -6.1535 1.3577 10 8 0.8285 -4.1964 2.2196 11 6 2.3507 -4.7969 -0.9722 12 6 2.7907 -4.1226 -2.0894 13 6 2.6775 -2.7386 -2.1589 14 7 3.1233 -2.0604 -3.2911 15 6 3.6132 -2.8117 -4.4494 16 6 3.9439 -1.8405 -5.5845 17 6 4.6051 -0.5526 -5.1660 18 1 4.0031 0.3157 -4.9427 19 6 5.9786 -0.4828 -5.0683 20 7 6.5556 0.6410 -4.7025 21 14 7.0201 -1.9845 -5.4554 22 1 7.4011 -1.9660 -6.8906 23 1 8.2460 -1.9661 -4.6174 24 1 6.2410 -3.2152 -5.1659 25 6 2.9805 -1.7873 -6.7718 26 6 4.3548 -2.4408 -6.9306 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 0.8899 31 1 1.6767 1.9562 0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.2475 -2.1492 0.8516 35 1 1.8185 -6.6447 0.6176 36 1 1.1187 -6.6280 2.1449 37 1 2.4403 -5.8719 -0.9203 38 1 3.2253 -4.6698 -2.9128 39 1 3.1093 -1.0908 -3.3126 40 1 4.5106 -3.3642 -4.1710 41 1 2.8449 -3.5100 -4.7811 42 1 7.5219 0.6900 -4.6334 43 1 2.1109 -2.4439 -6.7442 44 1 2.8246 -0.8205 -7.2505 45 1 5.1031 -1.9038 -7.5135 46 1 4.3900 -3.5275 -7.0073 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594704282.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:05 Heat of formation + Delta-G solvation = -28.948313 kcal Electronic energy + Delta-G solvation = -27097.805318 eV Core-core repulsion = 23374.204394 eV Total energy + Delta-G solvation = -3723.600924 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.36105 -39.07509 -37.89805 -36.91887 -34.46195 -33.57030 -32.88380 -32.20505 -29.92704 -29.10196 -27.18303 -26.22075 -25.36303 -23.00257 -22.89077 -21.74302 -20.62313 -20.32993 -19.23914 -18.44200 -17.23443 -16.69705 -16.50030 -16.04499 -15.51221 -15.24931 -15.02792 -14.58062 -14.49101 -14.29230 -13.86179 -13.70379 -13.66217 -13.13008 -12.90910 -12.71076 -12.57458 -12.50336 -12.34576 -12.16493 -11.79924 -11.66069 -11.23507 -11.04952 -10.89822 -10.68141 -10.55211 -10.48427 -10.23753 -9.93287 -9.78247 -9.70875 -9.66573 -9.15949 -8.68021 -8.59739 -8.33746 -6.73445 -6.21808 -4.27381 1.25868 1.66230 3.10606 3.21141 3.31862 3.32897 3.41272 3.60584 3.97484 4.14885 4.32478 4.81192 4.89142 4.99317 5.01249 5.06755 5.07238 5.13290 5.23170 5.46164 5.59734 5.61503 5.67821 5.80446 5.84955 5.89308 5.90300 5.99335 6.02554 6.08232 6.16887 6.25424 6.32077 6.34944 6.37801 6.40640 6.54448 6.61748 6.75574 6.83206 6.94480 7.01032 7.37223 7.53909 7.61900 7.94556 8.33204 8.35169 8.45186 8.79257 9.40643 10.89175 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012372 B = 0.004218 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2262.712881 B = 6636.850661 C = 7780.923196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.080 3.920 3 C -0.149 4.149 4 O -0.305 6.305 5 C 0.038 3.962 6 C -0.101 4.101 7 C -0.198 4.198 8 C 0.573 3.427 9 N -0.858 5.858 10 O -0.558 6.558 11 C -0.057 4.057 12 C -0.201 4.201 13 C 0.246 3.754 14 N -0.692 5.692 15 C 0.151 3.849 16 C -0.013 4.013 17 C -0.494 4.494 18 H 0.079 0.921 19 C 0.083 3.917 20 N -0.890 5.890 21 Si 0.882 3.118 22 H -0.279 1.279 23 H -0.295 1.295 24 H -0.258 1.258 25 C -0.178 4.178 26 C -0.196 4.196 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.137 0.863 35 H 0.399 0.601 36 H 0.399 0.601 37 H 0.119 0.881 38 H 0.131 0.869 39 H 0.421 0.579 40 H 0.055 0.945 41 H 0.045 0.955 42 H 0.266 0.734 43 H 0.073 0.927 44 H 0.087 0.913 45 H 0.089 0.911 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.127 -9.723 7.504 15.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.024 3.976 3 C -0.206 4.206 4 O -0.220 6.220 5 C -0.010 4.010 6 C -0.122 4.122 7 C -0.204 4.204 8 C 0.362 3.638 9 N -0.422 5.422 10 O -0.437 6.437 11 C -0.077 4.077 12 C -0.225 4.225 13 C 0.134 3.866 14 N -0.316 5.316 15 C 0.026 3.974 16 C -0.014 4.014 17 C -0.531 4.531 18 H 0.097 0.903 19 C -0.120 4.120 20 N -0.526 5.526 21 Si 0.710 3.290 22 H -0.205 1.205 23 H -0.222 1.222 24 H -0.183 1.183 25 C -0.215 4.215 26 C -0.234 4.234 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.154 0.846 35 H 0.229 0.771 36 H 0.229 0.771 37 H 0.137 0.863 38 H 0.149 0.851 39 H 0.261 0.739 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.076 0.924 43 H 0.091 0.909 44 H 0.105 0.895 45 H 0.108 0.892 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.090 -8.984 7.647 14.893 hybrid contribution 0.793 -0.987 -0.162 1.276 sum -8.297 -9.971 7.486 14.976 Atomic orbital electron populations 1.22364 0.95473 1.02965 1.02754 1.22345 0.93988 0.93693 0.87577 1.21840 1.02504 0.93535 1.02702 1.86129 1.82167 1.15561 1.38157 1.18229 1.04304 0.83302 0.95181 1.20958 1.00506 0.93699 0.97006 1.19070 1.11794 0.93518 0.96065 1.18238 0.77008 0.81928 0.86635 1.43754 1.66914 1.07905 1.23576 1.90765 1.45938 1.67612 1.39424 1.20781 0.96037 0.98562 0.92316 1.20348 1.09863 0.91559 1.00721 1.17617 0.91381 0.91238 0.86396 1.44962 1.64407 1.10395 1.11835 1.21147 0.96668 0.93370 0.86173 1.19540 0.99736 0.96608 0.85495 1.20135 0.91465 0.94294 1.47176 0.90290 1.24973 0.97814 0.95627 0.93631 1.69886 1.10580 1.25822 1.46338 0.86839 0.79661 0.84356 0.78146 1.20515 1.22169 1.18257 1.22900 0.91810 1.01244 1.05541 1.22944 0.98924 0.98022 1.03464 0.91510 0.91371 0.91911 0.91160 0.90961 0.91398 0.91347 0.84554 0.77115 0.77073 0.86337 0.85133 0.73910 0.92657 0.93713 0.92427 0.90875 0.89456 0.89240 0.90793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.13 9.18 37.16 0.34 -1.78 16 2 C 0.08 1.10 2.84 -26.73 -0.08 1.02 16 3 C -0.15 -1.84 9.56 37.15 0.36 -1.48 16 4 O -0.31 -5.19 9.03 -19.80 -0.18 -5.37 16 5 C 0.04 0.65 6.62 -39.15 -0.26 0.39 16 6 C -0.10 -1.58 7.80 -39.07 -0.30 -1.89 16 7 C -0.20 -2.85 5.88 -104.96 -0.62 -3.47 16 8 C 0.57 7.96 8.03 -12.48 -0.10 7.86 16 9 N -0.86 -7.77 8.82 30.45 0.27 -7.50 16 10 O -0.56 -9.71 17.17 5.28 0.09 -9.62 16 11 C -0.06 -0.72 9.53 -39.20 -0.37 -1.10 16 12 C -0.20 -2.97 9.27 -39.47 -0.37 -3.33 16 13 C 0.25 4.26 6.66 -83.66 -0.56 3.70 16 14 N -0.69 -13.27 5.52 -58.51 -0.32 -13.59 16 15 C 0.15 2.86 4.84 -4.04 -0.02 2.84 16 16 C -0.01 -0.27 1.19 -155.66 -0.18 -0.45 16 17 C -0.49 -12.64 7.98 -34.44 -0.27 -12.92 16 18 H 0.08 2.23 8.06 -52.49 -0.42 1.81 16 19 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 20 N -0.89 -25.80 13.96 55.43 0.77 -25.03 16 21 Si 0.88 20.65 24.98 -169.99 -4.25 16.40 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.26 -5.62 5.43 56.52 0.31 -5.31 16 25 C -0.18 -3.35 9.88 -26.73 -0.26 -3.61 16 26 C -0.20 -3.83 7.47 -26.73 -0.20 -4.03 16 27 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.79 6.97 -51.93 -0.36 0.43 16 30 H 0.07 0.94 6.27 -51.93 -0.33 0.61 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.14 2.09 5.02 -52.49 -0.26 1.83 16 35 H 0.40 2.56 6.84 -40.82 -0.28 2.28 16 36 H 0.40 2.96 8.93 -40.82 -0.36 2.59 16 37 H 0.12 1.04 6.39 -52.49 -0.34 0.70 16 38 H 0.13 1.77 6.72 -52.49 -0.35 1.42 16 39 H 0.42 8.92 6.70 -40.82 -0.27 8.65 16 40 H 0.06 1.08 6.41 -51.93 -0.33 0.75 16 41 H 0.04 0.75 7.73 -51.93 -0.40 0.35 16 42 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 43 H 0.07 1.21 8.08 -51.93 -0.42 0.79 16 44 H 0.09 1.69 8.14 -51.93 -0.42 1.26 16 45 H 0.09 1.87 7.03 -51.93 -0.36 1.50 16 46 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 367.77 15.07 5.54 5.54 Total: -1.00 -30.91 367.77 -7.76 -38.67 By element: Atomic # 1 Polarization: 23.28 SS G_CDS: -6.69 Total: 16.59 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: -3.00 Total: -16.10 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: 0.72 Total: -46.11 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: -0.09 Total: -14.99 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.25 Total: 16.40 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.91 -7.76 -38.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594704282.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.722 kcal (2) G-P(sol) polarization free energy of solvation -30.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds