Wall clock time and date at job start Tue Mar 31 2020 14:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.46764 * 2 1 4 4 O 1.45195 * 109.47204 * 120.00136 * 2 1 3 5 5 C 1.34766 * 117.00026 * 150.00148 * 4 2 1 6 6 O 1.21529 * 119.99873 * 359.97438 * 5 4 2 7 7 C 1.47283 * 120.00157 * 180.02562 * 5 4 2 8 8 C 1.40047 * 120.61287 * 0.02761 * 7 5 4 9 9 C 1.38309 * 118.36024 * 180.02562 * 8 7 5 10 10 C 1.38389 * 119.51981 * 359.97438 * 9 8 7 11 11 N 1.31851 * 121.23009 * 359.72034 * 10 9 8 12 12 C 1.32427 * 121.77753 * 0.57356 * 11 10 9 13 13 N 1.38225 * 119.82881 * 179.70498 * 12 11 10 14 14 C 1.46843 * 111.00164 * 63.70625 * 13 12 11 15 15 C 1.53038 * 109.52606 * 174.15750 * 14 13 12 16 16 C 1.53119 * 109.27579 * 59.18256 * 15 14 13 17 17 C 1.53119 * 109.15629 * 302.33938 * 16 15 14 18 18 H 1.08993 * 109.50985 * 297.67785 * 17 16 15 19 19 C 1.50705 * 109.50260 * 177.59936 * 17 16 15 20 20 H 1.08001 * 119.99896 * 240.08167 * 19 17 16 21 21 C 1.37874 * 119.99712 * 60.35375 * 19 17 16 22 22 N 1.31509 * 120.00181 * 359.72935 * 21 19 17 23 23 Si 1.86808 * 119.99787 * 179.72609 * 21 19 17 24 24 H 1.48498 * 109.47160 * 60.00258 * 23 21 19 25 25 H 1.48502 * 109.47163 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.46994 * 300.00166 * 23 21 19 27 27 C 1.46849 * 111.00004 * 299.45060 * 13 12 11 28 28 H 1.09000 * 109.46869 * 299.99591 * 1 2 3 29 29 H 1.08996 * 109.47063 * 60.00074 * 1 2 3 30 30 H 1.09006 * 109.46859 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46869 * 240.00409 * 2 1 3 32 32 H 1.08996 * 109.47270 * 299.99799 * 3 2 1 33 33 H 1.08997 * 109.47594 * 60.00550 * 3 2 1 34 34 H 1.09001 * 109.46835 * 180.02562 * 3 2 1 35 35 H 1.07998 * 120.81711 * 359.97438 * 8 7 5 36 36 H 1.08005 * 120.23860 * 179.97438 * 9 8 7 37 37 H 1.08000 * 119.38481 * 180.02562 * 10 9 8 38 38 H 1.09005 * 109.46503 * 54.13847 * 14 13 12 39 39 H 1.08999 * 109.46346 * 294.17358 * 14 13 12 40 40 H 1.08993 * 109.50567 * 299.23609 * 15 14 13 41 41 H 1.09006 * 109.50394 * 179.11972 * 15 14 13 42 42 H 1.09002 * 109.52071 * 182.44365 * 16 15 14 43 43 H 1.09000 * 109.57898 * 62.28027 * 16 15 14 44 44 H 0.97006 * 120.00132 * 179.97438 * 22 21 19 45 45 H 1.09002 * 109.42507 * 65.80381 * 27 13 12 46 46 H 1.09001 * 109.49878 * 305.83927 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 3.1984 -1.3195 1.0846 6 8 3.8097 -1.3020 0.0345 7 6 3.7514 -2.0356 2.2468 8 6 3.0570 -2.0654 3.4627 9 6 3.6196 -2.7512 4.5239 10 6 4.8396 -3.3830 4.3576 11 7 5.4754 -3.3486 3.2030 12 6 4.9857 -2.7023 2.1561 13 7 5.6894 -2.6874 0.9665 14 6 5.8103 -4.0408 0.4096 15 6 6.4641 -3.9688 -0.9722 16 6 7.8470 -3.3240 -0.8441 17 6 7.6976 -1.9350 -0.2173 18 1 7.0967 -1.3032 -0.8713 19 6 9.0597 -1.3169 -0.0333 20 1 9.3993 -1.0427 0.9546 21 6 9.8700 -1.0963 -1.1268 22 7 9.4564 -1.4301 -2.3297 23 14 11.5553 -0.3231 -0.8996 24 1 12.3783 -1.1821 -0.0107 25 1 12.2225 -0.1935 -2.2199 26 1 11.4046 1.0215 -0.2876 27 6 7.0077 -2.0650 1.1426 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1299 1.4425 -0.0005 35 1 2.1062 -1.5645 3.5692 36 1 3.1104 -2.7934 5.4754 37 1 5.2767 -3.9182 5.1876 38 1 4.8197 -4.4866 0.3199 39 1 6.4248 -4.6519 1.0707 40 1 5.8432 -3.3693 -1.6378 41 1 6.5680 -4.9749 -1.3786 42 1 8.2985 -3.2311 -1.8319 43 1 8.4816 -3.9434 -0.2103 44 1 10.0264 -1.2746 -3.0991 45 1 7.6163 -2.6850 1.8009 46 1 6.8870 -1.0760 1.5846 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596328019.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:34 Heat of formation + Delta-G solvation = -40.745367 kcal Electronic energy + Delta-G solvation = -27704.300859 eV Core-core repulsion = 23980.188376 eV Total energy + Delta-G solvation = -3724.112483 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.86028 -39.66943 -37.76851 -36.42269 -33.90189 -33.31944 -32.36546 -31.93757 -29.89013 -29.46779 -27.37946 -24.99590 -24.89318 -24.18985 -22.35040 -21.56025 -21.20530 -20.50051 -18.55852 -17.93686 -17.22763 -16.72450 -16.09742 -15.89404 -15.78044 -14.90737 -14.67924 -14.31744 -14.26979 -13.91782 -13.53832 -13.30157 -13.26316 -13.04094 -12.70598 -12.45808 -12.42034 -12.37074 -12.19924 -12.05647 -11.74803 -11.64429 -10.95125 -10.88184 -10.70727 -10.63904 -10.44033 -10.13856 -10.06473 -9.98338 -9.75837 -9.73943 -9.41740 -9.06815 -8.89519 -8.61992 -8.24128 -7.82480 -5.90326 -3.96297 0.61090 1.15555 2.72435 2.83218 3.37027 3.41181 3.43906 3.79350 4.01116 4.48214 4.53130 4.69954 4.73722 4.80206 4.85483 4.96917 5.09759 5.24452 5.33328 5.39649 5.41636 5.58782 5.68718 5.71165 5.75851 5.84702 5.90121 5.91409 6.00808 6.12002 6.12468 6.24615 6.38503 6.53985 6.54707 6.65503 6.77119 6.84584 7.02656 7.26788 7.47627 7.59361 7.82032 7.88137 7.92484 8.13186 8.18296 8.25401 8.54312 9.07062 9.67153 11.15714 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012102 B = 0.004280 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.181871 B = 6540.166245 C = 7680.176582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.083 3.917 3 C -0.170 4.170 4 O -0.362 6.362 5 C 0.499 3.501 6 O -0.442 6.442 7 C -0.157 4.157 8 C -0.021 4.021 9 C -0.203 4.203 10 C 0.141 3.859 11 N -0.515 5.515 12 C 0.373 3.627 13 N -0.478 5.478 14 C 0.076 3.924 15 C -0.115 4.115 16 C -0.109 4.109 17 C 0.058 3.942 18 H 0.038 0.962 19 C -0.514 4.514 20 H 0.052 0.948 21 C 0.064 3.936 22 N -0.887 5.887 23 Si 0.890 3.110 24 H -0.278 1.278 25 H -0.288 1.288 26 H -0.278 1.278 27 C 0.079 3.921 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.147 0.853 36 H 0.140 0.860 37 H 0.158 0.842 38 H 0.053 0.947 39 H 0.039 0.961 40 H 0.065 0.935 41 H 0.049 0.951 42 H 0.092 0.908 43 H 0.031 0.969 44 H 0.260 0.740 45 H 0.035 0.965 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.320 -1.130 10.043 20.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.028 3.972 3 C -0.228 4.228 4 O -0.281 6.281 5 C 0.339 3.661 6 O -0.325 6.325 7 C -0.162 4.162 8 C -0.047 4.047 9 C -0.223 4.223 10 C -0.018 4.018 11 N -0.227 5.227 12 C 0.144 3.856 13 N -0.202 5.202 14 C -0.050 4.050 15 C -0.153 4.153 16 C -0.147 4.147 17 C 0.039 3.961 18 H 0.056 0.944 19 C -0.553 4.553 20 H 0.070 0.930 21 C -0.137 4.137 22 N -0.526 5.526 23 Si 0.718 3.282 24 H -0.204 1.204 25 H -0.213 1.213 26 H -0.204 1.204 27 C -0.045 4.045 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.105 0.895 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.165 0.835 36 H 0.158 0.842 37 H 0.175 0.825 38 H 0.071 0.929 39 H 0.057 0.943 40 H 0.083 0.917 41 H 0.068 0.932 42 H 0.110 0.890 43 H 0.050 0.950 44 H 0.070 0.930 45 H 0.054 0.946 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.517 -1.247 9.018 19.741 hybrid contribution 0.577 0.452 0.792 1.079 sum -16.940 -0.796 9.809 19.591 Atomic orbital electron populations 1.21876 0.92775 1.02907 1.02886 1.22646 0.94425 0.92750 0.87357 1.22205 1.02788 0.95167 1.02605 1.86558 1.36892 1.63538 1.41153 1.20626 0.79532 0.77641 0.88267 1.91004 1.57454 1.55566 1.28504 1.19933 0.97228 1.05125 0.93891 1.21860 0.98680 0.93350 0.90800 1.22047 0.98189 1.01751 1.00275 1.22903 0.91033 0.93434 0.94462 1.68196 1.35114 1.19002 1.00430 1.20244 0.89102 0.86969 0.89280 1.60139 1.21261 1.20909 1.17860 1.21985 0.99053 0.86804 0.97174 1.21670 0.99458 0.99635 0.94527 1.21648 0.92536 0.96821 1.03730 1.18654 0.94198 0.93608 0.89615 0.94375 1.21082 1.00584 1.40351 0.93247 0.92954 1.24908 0.98010 0.95562 0.95218 1.69889 1.36916 1.47645 0.98157 0.86696 0.84496 0.79863 0.77132 1.20365 1.21324 1.20383 1.22343 0.84337 0.96461 1.01405 0.91634 0.90522 0.91859 0.89543 0.90890 0.91872 0.91476 0.83509 0.84224 0.82519 0.92886 0.94291 0.91670 0.93244 0.88996 0.94998 0.93047 0.94624 0.92789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.57 37.16 0.36 -0.88 16 2 C 0.08 0.98 3.19 -26.73 -0.09 0.90 16 3 C -0.17 -1.90 9.55 37.15 0.35 -1.54 16 4 O -0.36 -4.98 9.20 -40.67 -0.37 -5.35 16 5 C 0.50 8.37 7.87 34.41 0.27 8.64 16 6 O -0.44 -8.99 14.32 -19.29 -0.28 -9.27 16 7 C -0.16 -2.48 5.91 -104.66 -0.62 -3.10 16 8 C -0.02 -0.24 9.73 -38.88 -0.38 -0.62 16 9 C -0.20 -2.03 10.08 -39.50 -0.40 -2.43 16 10 C 0.14 1.71 11.16 -17.49 -0.20 1.51 16 11 N -0.52 -8.59 9.71 -12.19 -0.12 -8.71 16 12 C 0.37 6.78 5.29 -155.20 -0.82 5.96 16 13 N -0.48 -9.97 2.58 -173.00 -0.45 -10.42 16 14 C 0.08 1.50 5.27 -3.84 -0.02 1.48 16 15 C -0.12 -2.42 6.09 -26.65 -0.16 -2.58 16 16 C -0.11 -2.70 5.03 -26.61 -0.13 -2.84 16 17 C 0.06 1.54 2.26 -91.69 -0.21 1.33 16 18 H 0.04 1.13 8.14 -51.93 -0.42 0.71 16 19 C -0.51 -14.61 8.56 -34.44 -0.29 -14.91 16 20 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 21 C 0.06 1.83 5.31 -17.82 -0.09 1.73 16 22 N -0.89 -25.94 11.36 55.43 0.63 -25.31 16 23 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 27 C 0.08 1.86 4.47 -3.83 -0.02 1.84 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.09 1.16 7.16 -51.93 -0.37 0.79 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.15 1.33 7.70 -52.49 -0.40 0.93 16 36 H 0.14 0.88 8.06 -52.48 -0.42 0.46 16 37 H 0.16 1.37 8.06 -52.49 -0.42 0.95 16 38 H 0.05 0.96 8.10 -51.93 -0.42 0.54 16 39 H 0.04 0.77 8.05 -51.93 -0.42 0.35 16 40 H 0.06 1.44 8.14 -51.93 -0.42 1.02 16 41 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.09 2.51 6.17 -51.93 -0.32 2.19 16 43 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 45 H 0.04 0.85 8.00 -51.93 -0.42 0.43 16 46 H 0.05 1.29 8.10 -51.93 -0.42 0.87 16 LS Contribution 374.24 15.07 5.64 5.64 Total: -1.00 -32.31 374.24 -9.80 -42.10 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -7.39 Total: 0.04 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: -2.44 Total: -5.50 kcal Atomic # 7 Polarization: -44.50 SS G_CDS: 0.06 Total: -44.44 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: -0.65 Total: -14.62 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.31 -9.80 -42.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596328019.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.358 kcal (2) G-P(sol) polarization free energy of solvation -32.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds