Wall clock time and date at job start Tue Mar 31 2020 14:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.46764 * 2 1 4 4 O 1.45195 * 109.47204 * 120.00136 * 2 1 3 5 5 C 1.34766 * 117.00026 * 150.00148 * 4 2 1 6 6 O 1.21529 * 119.99873 * 359.97438 * 5 4 2 7 7 C 1.47283 * 120.00157 * 180.02562 * 5 4 2 8 8 C 1.40047 * 120.61287 * 0.02761 * 7 5 4 9 9 C 1.38309 * 118.36024 * 180.02562 * 8 7 5 10 10 C 1.38389 * 119.51981 * 359.97438 * 9 8 7 11 11 N 1.31851 * 121.23009 * 359.72034 * 10 9 8 12 12 C 1.32427 * 121.77753 * 0.57356 * 11 10 9 13 13 N 1.38225 * 119.82881 * 179.70498 * 12 11 10 14 14 C 1.46843 * 111.00164 * 63.70625 * 13 12 11 15 15 C 1.53038 * 109.52606 * 174.15750 * 14 13 12 16 16 C 1.53119 * 109.27579 * 59.18256 * 15 14 13 17 17 C 1.53119 * 109.15629 * 302.33938 * 16 15 14 18 18 H 1.08993 * 109.50985 * 297.67785 * 17 16 15 19 19 C 1.50705 * 109.50260 * 177.59936 * 17 16 15 20 20 H 1.08001 * 119.99896 * 240.08167 * 19 17 16 21 21 C 1.37874 * 119.99712 * 60.35375 * 19 17 16 22 22 N 1.31509 * 120.00181 * 359.72935 * 21 19 17 23 23 Si 1.86808 * 119.99787 * 179.72609 * 21 19 17 24 24 H 1.48498 * 109.47160 * 60.00258 * 23 21 19 25 25 H 1.48502 * 109.47163 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.46994 * 300.00166 * 23 21 19 27 27 C 1.46849 * 111.00004 * 299.45060 * 13 12 11 28 28 H 1.09000 * 109.46869 * 299.99591 * 1 2 3 29 29 H 1.08996 * 109.47063 * 60.00074 * 1 2 3 30 30 H 1.09006 * 109.46859 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46869 * 240.00409 * 2 1 3 32 32 H 1.08996 * 109.47270 * 299.99799 * 3 2 1 33 33 H 1.08997 * 109.47594 * 60.00550 * 3 2 1 34 34 H 1.09001 * 109.46835 * 180.02562 * 3 2 1 35 35 H 1.07998 * 120.81711 * 359.97438 * 8 7 5 36 36 H 1.08005 * 120.23860 * 179.97438 * 9 8 7 37 37 H 1.08000 * 119.38481 * 180.02562 * 10 9 8 38 38 H 1.09005 * 109.46503 * 54.13847 * 14 13 12 39 39 H 1.08999 * 109.46346 * 294.17358 * 14 13 12 40 40 H 1.08993 * 109.50567 * 299.23609 * 15 14 13 41 41 H 1.09006 * 109.50394 * 179.11972 * 15 14 13 42 42 H 1.09002 * 109.52071 * 182.44365 * 16 15 14 43 43 H 1.09000 * 109.57898 * 62.28027 * 16 15 14 44 44 H 0.97006 * 120.00132 * 179.97438 * 22 21 19 45 45 H 1.09002 * 109.42507 * 65.80381 * 27 13 12 46 46 H 1.09001 * 109.49878 * 305.83927 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 3.1984 -1.3195 1.0846 6 8 3.8097 -1.3020 0.0345 7 6 3.7514 -2.0356 2.2468 8 6 3.0570 -2.0654 3.4627 9 6 3.6196 -2.7512 4.5239 10 6 4.8396 -3.3830 4.3576 11 7 5.4754 -3.3486 3.2030 12 6 4.9857 -2.7023 2.1561 13 7 5.6894 -2.6874 0.9665 14 6 5.8103 -4.0408 0.4096 15 6 6.4641 -3.9688 -0.9722 16 6 7.8470 -3.3240 -0.8441 17 6 7.6976 -1.9350 -0.2173 18 1 7.0967 -1.3032 -0.8713 19 6 9.0597 -1.3169 -0.0333 20 1 9.3993 -1.0427 0.9546 21 6 9.8700 -1.0963 -1.1268 22 7 9.4564 -1.4301 -2.3297 23 14 11.5553 -0.3231 -0.8996 24 1 12.3783 -1.1821 -0.0107 25 1 12.2225 -0.1935 -2.2199 26 1 11.4046 1.0215 -0.2876 27 6 7.0077 -2.0650 1.1426 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1299 1.4425 -0.0005 35 1 2.1062 -1.5645 3.5692 36 1 3.1104 -2.7934 5.4754 37 1 5.2767 -3.9182 5.1876 38 1 4.8197 -4.4866 0.3199 39 1 6.4248 -4.6519 1.0707 40 1 5.8432 -3.3693 -1.6378 41 1 6.5680 -4.9749 -1.3786 42 1 8.2985 -3.2311 -1.8319 43 1 8.4816 -3.9434 -0.2103 44 1 10.0264 -1.2746 -3.0991 45 1 7.6163 -2.6850 1.8009 46 1 6.8870 -1.0760 1.5846 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596328019.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:33 Heat of formation + Delta-G solvation = -58.682665 kcal Electronic energy + Delta-G solvation = -27705.078679 eV Core-core repulsion = 23980.188376 eV Total energy + Delta-G solvation = -3724.890302 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.07475 -40.88419 -39.32896 -37.64817 -35.72147 -34.38317 -33.80237 -33.31229 -31.80731 -30.83177 -28.17970 -27.00166 -26.19011 -25.56459 -23.61882 -23.27610 -22.57728 -21.57385 -20.43318 -19.10528 -18.79596 -17.99250 -17.69936 -17.22355 -16.94446 -16.62973 -15.97908 -15.88918 -15.45722 -15.13384 -15.01462 -14.73830 -14.51060 -14.40672 -14.15139 -14.00662 -13.88145 -13.52764 -13.34422 -13.13516 -13.08295 -12.85859 -12.71132 -12.67272 -12.59999 -11.94649 -11.88472 -11.81747 -11.57555 -11.48091 -11.36752 -11.14848 -10.98896 -10.80707 -10.65793 -10.41489 -10.00475 -9.39919 -8.09452 -6.24865 -0.49069 0.14542 1.39286 1.41910 1.49574 1.61241 1.64946 2.40059 2.67659 2.71249 3.16858 3.44988 3.70765 3.85351 3.88876 3.94068 3.98539 4.05224 4.16745 4.18300 4.24862 4.36490 4.46452 4.51962 4.59618 4.68932 4.77711 4.78164 4.86142 4.86697 4.88578 4.94832 5.00000 5.07141 5.11283 5.14445 5.24774 5.31708 5.41927 5.50440 5.54391 5.59655 5.83780 6.02035 6.11894 6.37105 6.40071 6.82387 6.85682 6.91197 7.42571 8.95610 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012102 B = 0.004280 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.181871 B = 6540.166245 C = 7680.176582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.073 3.927 3 C -0.167 4.167 4 O -0.351 6.351 5 C 0.500 3.500 6 O -0.494 6.494 7 C -0.176 4.176 8 C -0.012 4.012 9 C -0.171 4.171 10 C 0.136 3.864 11 N -0.546 5.546 12 C 0.336 3.664 13 N -0.489 5.489 14 C 0.084 3.916 15 C -0.106 4.106 16 C -0.099 4.099 17 C 0.060 3.940 18 H -0.009 1.009 19 C -0.540 4.540 20 H 0.049 0.951 21 C 0.016 3.984 22 N -0.914 5.914 23 Si 0.958 3.042 24 H -0.269 1.269 25 H -0.280 1.280 26 H -0.273 1.273 27 C 0.103 3.897 28 H 0.080 0.920 29 H 0.096 0.904 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.030 0.970 35 H 0.179 0.821 36 H 0.193 0.807 37 H 0.194 0.806 38 H 0.071 0.929 39 H 0.039 0.961 40 H 0.046 0.954 41 H 0.078 0.922 42 H 0.062 0.938 43 H 0.028 0.972 44 H 0.262 0.738 45 H 0.028 0.972 46 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.323 -1.362 13.060 24.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.018 3.982 3 C -0.224 4.224 4 O -0.269 6.269 5 C 0.343 3.657 6 O -0.380 6.380 7 C -0.181 4.181 8 C -0.038 4.038 9 C -0.190 4.190 10 C -0.023 4.023 11 N -0.258 5.258 12 C 0.108 3.892 13 N -0.212 5.212 14 C -0.043 4.043 15 C -0.144 4.144 16 C -0.137 4.137 17 C 0.041 3.959 18 H 0.009 0.991 19 C -0.579 4.579 20 H 0.067 0.933 21 C -0.183 4.183 22 N -0.553 5.553 23 Si 0.783 3.217 24 H -0.194 1.194 25 H -0.205 1.205 26 H -0.198 1.198 27 C -0.023 4.023 28 H 0.099 0.901 29 H 0.114 0.886 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.112 0.888 33 H 0.099 0.901 34 H 0.049 0.951 35 H 0.196 0.804 36 H 0.210 0.790 37 H 0.211 0.789 38 H 0.089 0.911 39 H 0.057 0.943 40 H 0.065 0.935 41 H 0.096 0.904 42 H 0.081 0.919 43 H 0.046 0.954 44 H 0.071 0.929 45 H 0.046 0.954 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -19.559 -1.481 12.065 23.029 hybrid contribution 1.068 0.541 -0.031 1.198 sum -18.491 -0.940 12.034 22.082 Atomic orbital electron populations 1.21868 0.89350 1.03656 1.04582 1.22953 0.96887 0.92455 0.85870 1.22198 1.00405 0.95289 1.04510 1.86545 1.35406 1.63056 1.41899 1.20983 0.79675 0.77042 0.88020 1.90988 1.58912 1.57630 1.30485 1.20017 0.97229 1.05562 0.95288 1.22261 0.99301 0.92932 0.89265 1.22587 0.96714 0.98281 1.01460 1.23635 0.91750 0.93256 0.93661 1.68070 1.36527 1.19682 1.01566 1.20105 0.90206 0.89881 0.89025 1.59914 1.19380 1.21254 1.20649 1.21893 0.99707 0.86822 0.95834 1.21557 0.96820 1.00360 0.95649 1.21425 0.94555 0.96155 1.01579 1.18517 0.93172 0.93578 0.90652 0.99092 1.21412 1.01776 1.41269 0.93402 0.93254 1.25740 1.01940 0.95844 0.94774 1.70043 1.38285 1.48131 0.98852 0.85617 0.79598 0.79031 0.77430 1.19388 1.20531 1.19808 1.21841 0.85952 0.95772 0.98774 0.90144 0.88563 0.91597 0.91970 0.88837 0.90115 0.95114 0.80385 0.78994 0.78925 0.91100 0.94294 0.93535 0.90390 0.91897 0.95359 0.92917 0.95420 0.94492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.57 71.98 0.69 -1.31 16 2 C 0.07 1.72 3.19 30.59 0.10 1.82 16 3 C -0.17 -3.73 9.55 71.98 0.69 -3.04 16 4 O -0.35 -9.48 9.20 -56.77 -0.52 -10.00 16 5 C 0.50 17.29 7.87 70.20 0.55 17.84 16 6 O -0.49 -21.58 14.32 19.74 0.28 -21.30 16 7 C -0.18 -5.49 5.91 -19.89 -0.12 -5.61 16 8 C -0.01 -0.24 9.73 22.73 0.22 -0.01 16 9 C -0.17 -2.56 10.08 22.32 0.23 -2.34 16 10 C 0.14 2.81 11.16 84.73 0.95 3.75 16 11 N -0.55 -17.68 9.71 -192.49 -1.87 -19.54 16 12 C 0.34 12.35 5.29 133.67 0.71 13.06 16 13 N -0.49 -21.41 2.58 -701.25 -1.81 -23.22 16 14 C 0.08 3.40 5.27 86.33 0.46 3.85 16 15 C -0.11 -4.66 6.09 30.65 0.19 -4.47 16 16 C -0.10 -5.19 5.03 30.67 0.15 -5.04 16 17 C 0.06 3.39 2.26 -11.49 -0.03 3.36 16 18 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 19 C -0.54 -32.28 8.56 25.60 0.22 -32.06 16 20 H 0.05 2.89 7.74 -2.91 -0.02 2.87 16 21 C 0.02 0.94 5.31 84.65 0.45 1.39 16 22 N -0.91 -55.77 11.36 21.45 0.24 -55.52 16 23 Si 0.96 45.71 29.54 68.60 2.03 47.74 16 24 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 25 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 26 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 27 C 0.10 5.12 4.47 86.33 0.39 5.50 16 28 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.06 1.77 7.16 -2.39 -0.02 1.76 16 32 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.18 2.39 7.70 -2.91 -0.02 2.36 16 36 H 0.19 0.96 8.06 -2.91 -0.02 0.93 16 37 H 0.19 2.47 8.06 -2.91 -0.02 2.45 16 38 H 0.07 2.61 8.10 -2.38 -0.02 2.59 16 39 H 0.04 1.57 8.05 -2.39 -0.02 1.55 16 40 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.08 2.93 8.14 -2.38 -0.02 2.91 16 42 H 0.06 3.65 6.17 -2.39 -0.01 3.63 16 43 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.26 15.10 8.31 -92.70 -0.77 14.33 16 45 H 0.03 1.39 8.00 -2.39 -0.02 1.37 16 46 H 0.04 1.90 8.10 -2.39 -0.02 1.88 16 Total: -1.00 -77.70 374.24 5.14 -72.57 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: 0.96 Total: 12.59 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: 5.83 Total: -3.31 kcal Atomic # 7 Polarization: -94.85 SS G_CDS: -3.44 Total: -98.29 kcal Atomic # 8 Polarization: -31.06 SS G_CDS: -0.24 Total: -31.30 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -77.70 5.14 -72.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596328019.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.882 kcal (2) G-P(sol) polarization free energy of solvation -77.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds