Wall clock time and date at job start Tue Mar 31 2020 14:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47236 * 2 1 4 4 O 1.42901 * 109.47058 * 120.00271 * 2 1 3 5 5 C 1.35429 * 116.99818 * 150.00216 * 4 2 1 6 6 N 1.32241 * 119.80131 * 0.26342 * 5 4 2 7 7 C 1.31879 * 121.79893 * 180.27159 * 6 5 4 8 8 C 1.38364 * 121.18231 * 359.74860 * 7 6 5 9 9 C 1.38328 * 119.45997 * 359.97438 * 8 7 6 10 10 C 1.39982 * 118.35346 * 359.97438 * 9 8 7 11 11 C 1.47522 * 120.59975 * 180.02562 * 10 9 8 12 12 O 1.21592 * 119.99978 * 233.81887 * 11 10 9 13 13 N 1.34774 * 120.00303 * 53.81598 * 11 10 9 14 14 C 1.46922 * 120.63233 * 175.78748 * 13 11 10 15 15 C 1.53191 * 108.89288 * 233.67605 * 14 13 11 16 16 C 1.53045 * 109.31318 * 305.29370 * 15 14 13 17 17 C 1.53039 * 109.53498 * 61.36508 * 16 15 14 18 18 H 1.09001 * 109.50100 * 58.62476 * 17 16 15 19 19 C 1.50702 * 109.49907 * 178.68162 * 17 16 15 20 20 H 1.08003 * 119.99787 * 0.02562 * 19 17 16 21 21 C 1.37876 * 120.00687 * 179.97438 * 19 17 16 22 22 N 1.31521 * 119.99254 * 0.02562 * 21 19 17 23 23 Si 1.86798 * 120.00376 * 180.02562 * 21 19 17 24 24 H 1.48492 * 109.47331 * 90.00103 * 23 21 19 25 25 H 1.48499 * 109.46782 * 210.00076 * 23 21 19 26 26 H 1.48492 * 109.46769 * 329.99693 * 23 21 19 27 27 C 1.47205 * 120.80742 * 355.92829 * 13 11 10 28 28 H 1.08997 * 109.46977 * 299.99831 * 1 2 3 29 29 H 1.08997 * 109.47002 * 59.99785 * 1 2 3 30 30 H 1.09001 * 109.47396 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46977 * 240.00169 * 2 1 3 32 32 H 1.08997 * 109.47301 * 300.00032 * 3 2 1 33 33 H 1.08997 * 109.47000 * 60.00183 * 3 2 1 34 34 H 1.09005 * 109.46638 * 179.97438 * 3 2 1 35 35 H 1.07993 * 119.40652 * 179.72750 * 7 6 5 36 36 H 1.08007 * 120.26229 * 179.97438 * 8 7 6 37 37 H 1.08006 * 120.82391 * 180.02562 * 9 8 7 38 38 H 1.09004 * 109.58523 * 113.82050 * 14 13 11 39 39 H 1.08999 * 109.58702 * 353.53046 * 14 13 11 40 40 H 1.08998 * 109.49793 * 65.24301 * 15 14 13 41 41 H 1.08998 * 109.50161 * 185.34487 * 15 14 13 42 42 H 1.08999 * 109.46009 * 181.38195 * 16 15 14 43 43 H 1.08998 * 109.46438 * 301.36143 * 16 15 14 44 44 H 0.97002 * 119.99588 * 179.97438 * 22 21 19 45 45 H 1.08996 * 109.54142 * 6.53556 * 27 13 11 46 46 H 1.09006 * 109.67441 * 246.23012 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 3.1965 -1.3118 1.0654 6 7 3.8611 -1.2854 -0.0776 7 6 5.0204 -1.8974 -0.2216 8 6 5.5978 -2.5939 0.8253 9 6 4.9486 -2.6495 2.0455 10 6 3.7198 -1.9916 2.1753 11 6 2.9852 -2.0183 3.4543 12 8 1.8275 -2.3891 3.4829 13 7 3.5972 -1.6318 4.5912 14 6 2.8532 -1.5650 5.8564 15 6 3.0295 -0.1691 6.4623 16 6 4.5224 0.1393 6.5974 17 6 5.1746 0.1278 5.2130 18 1 4.6878 0.8657 4.5753 19 6 6.6380 0.4634 5.3435 20 1 7.0612 0.6644 6.3166 21 6 7.4369 0.5127 4.2209 22 7 6.9216 0.2674 3.0359 23 14 9.2509 0.9279 4.3829 24 1 10.0293 -0.3215 4.5778 25 1 9.7141 1.6122 3.1490 26 1 9.4513 1.8233 5.5504 27 6 5.0227 -1.2647 4.5928 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.1301 1.4424 0.0005 35 1 5.5280 -1.8544 -1.1739 36 1 6.5477 -3.0900 0.6907 37 1 5.3794 -3.1866 2.8776 38 1 3.2392 -2.3146 6.5473 39 1 1.7958 -1.7510 5.6688 40 1 2.5625 0.5711 5.8127 41 1 2.5611 -0.1376 7.4461 42 1 4.6507 1.1221 7.0510 43 1 4.9937 -0.6155 7.2268 44 1 7.4836 0.3024 2.2461 45 1 5.3970 -1.2517 3.5692 46 1 5.5876 -1.9895 5.1792 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597904117.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:27 Heat of formation + Delta-G solvation = -44.545380 kcal Electronic energy + Delta-G solvation = -28458.138541 eV Core-core repulsion = 24733.861277 eV Total energy + Delta-G solvation = -3724.277264 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.57617 -39.03625 -37.82742 -36.60775 -33.19697 -33.04125 -32.80967 -31.43800 -30.06646 -29.52282 -27.11561 -25.27816 -25.02917 -23.66888 -23.24684 -21.66546 -20.94618 -19.99048 -18.71164 -17.99153 -16.85212 -16.42401 -16.20215 -15.58935 -15.22400 -14.87344 -14.63471 -14.39332 -13.97114 -13.83155 -13.60376 -13.41721 -12.93767 -12.83981 -12.76423 -12.59360 -12.19226 -12.17281 -12.08028 -11.93172 -11.83644 -11.71443 -11.06759 -10.96940 -10.73595 -10.58085 -10.55826 -10.43017 -10.24765 -9.99972 -9.69012 -9.49516 -9.23972 -9.07883 -8.80222 -8.52921 -8.08728 -7.75936 -6.12379 -4.18310 1.29487 1.69986 3.20785 3.23487 3.30467 3.33275 3.34057 3.72423 4.21685 4.33782 4.57112 5.01447 5.11285 5.14056 5.19773 5.23267 5.33320 5.40705 5.48215 5.58481 5.63576 5.65311 5.77749 5.86207 5.88562 5.95761 5.97670 6.10040 6.18219 6.28533 6.30702 6.37002 6.39882 6.46640 6.50349 6.63516 6.75285 6.81685 6.90959 6.94612 7.28273 7.47252 7.62560 7.73986 7.90767 8.09160 8.17682 8.33678 8.80911 8.86565 9.46962 10.93463 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.011086 B = 0.005765 C = 0.004723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2525.075629 B = 4855.797600 C = 5926.748288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.081 3.919 3 C -0.168 4.168 4 O -0.286 6.286 5 C 0.365 3.635 6 N -0.545 5.545 7 C 0.155 3.845 8 C -0.206 4.206 9 C 0.009 3.991 10 C -0.183 4.183 11 C 0.571 3.429 12 O -0.553 6.553 13 N -0.600 5.600 14 C 0.115 3.885 15 C -0.133 4.133 16 C -0.111 4.111 17 C 0.039 3.961 18 H 0.029 0.971 19 C -0.515 4.515 20 H 0.058 0.942 21 C 0.065 3.935 22 N -0.884 5.884 23 Si 0.891 3.109 24 H -0.280 1.280 25 H -0.287 1.287 26 H -0.275 1.275 27 C 0.096 3.904 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.087 0.913 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.156 0.844 36 H 0.137 0.863 37 H 0.140 0.860 38 H 0.059 0.941 39 H 0.080 0.920 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.051 0.949 43 H 0.050 0.950 44 H 0.262 0.738 45 H 0.124 0.876 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.591 -3.583 -5.315 8.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.025 3.975 3 C -0.226 4.226 4 O -0.192 6.192 5 C 0.186 3.814 6 N -0.268 5.268 7 C -0.002 4.002 8 C -0.226 4.226 9 C -0.017 4.017 10 C -0.189 4.189 11 C 0.358 3.642 12 O -0.433 6.433 13 N -0.331 5.331 14 C -0.008 4.008 15 C -0.171 4.171 16 C -0.149 4.149 17 C 0.020 3.980 18 H 0.048 0.952 19 C -0.554 4.554 20 H 0.076 0.924 21 C -0.137 4.137 22 N -0.523 5.523 23 Si 0.719 3.281 24 H -0.207 1.207 25 H -0.213 1.213 26 H -0.200 1.200 27 C -0.025 4.025 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.105 0.895 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.173 0.827 36 H 0.155 0.845 37 H 0.158 0.842 38 H 0.077 0.923 39 H 0.099 0.901 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.070 0.930 43 H 0.068 0.932 44 H 0.072 0.928 45 H 0.141 0.859 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.714 -3.281 -5.947 9.550 hybrid contribution 1.754 0.045 0.606 1.856 sum -4.960 -3.236 -5.341 7.975 Atomic orbital electron populations 1.21876 0.93204 1.02879 1.02602 1.22310 0.94283 0.92833 0.88103 1.22211 1.02592 0.95586 1.02168 1.86377 1.31239 1.63634 1.37964 1.19496 0.85366 0.88155 0.88396 1.67238 1.11174 1.24271 1.24138 1.22381 0.89355 0.89839 0.98618 1.21729 1.02173 1.04699 0.94001 1.21436 0.90093 0.92807 0.97346 1.19692 0.98208 1.06635 0.94390 1.17860 0.85742 0.77291 0.83265 1.90699 1.17202 1.48788 1.86569 1.48468 1.13153 1.64486 1.07009 1.21473 0.97242 0.97073 0.84965 1.21941 0.98891 0.96633 0.99660 1.21629 0.92824 1.00227 1.00171 1.18955 0.95621 0.92507 0.90897 0.95245 1.21115 0.93243 1.47578 0.93426 0.92354 1.24984 0.98489 0.94922 0.95349 1.69847 1.35520 1.49049 0.97851 0.86602 0.85340 0.78561 0.77582 1.20661 1.21254 1.19988 1.22692 0.75970 0.97872 1.05976 0.91675 0.90852 0.91887 0.89514 0.91492 0.92043 0.91618 0.82658 0.84549 0.84250 0.92265 0.90136 0.92209 0.92168 0.93028 0.93166 0.92839 0.85885 0.93561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.56 37.16 0.36 -1.50 16 2 C 0.08 1.25 3.11 -26.73 -0.08 1.16 16 3 C -0.17 -2.44 9.53 37.16 0.35 -2.08 16 4 O -0.29 -5.63 8.96 -21.42 -0.19 -5.82 16 5 C 0.37 7.27 7.46 -16.61 -0.12 7.15 16 6 N -0.54 -9.62 8.64 -12.98 -0.11 -9.73 16 7 C 0.15 2.35 11.17 -17.48 -0.20 2.15 16 8 C -0.21 -3.15 10.09 -39.50 -0.40 -3.55 16 9 C 0.01 0.16 7.56 -38.90 -0.29 -0.13 16 10 C -0.18 -3.74 4.92 -104.69 -0.52 -4.26 16 11 C 0.57 12.46 6.89 -12.48 -0.09 12.37 16 12 O -0.55 -13.03 16.18 1.84 0.03 -13.00 16 13 N -0.60 -12.51 2.98 -173.78 -0.52 -13.03 16 14 C 0.12 2.11 6.41 -3.71 -0.02 2.09 16 15 C -0.13 -2.36 6.08 -26.61 -0.16 -2.52 16 16 C -0.11 -2.22 5.11 -26.69 -0.14 -2.35 16 17 C 0.04 0.93 2.25 -91.65 -0.21 0.73 16 18 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 19 C -0.52 -13.14 8.56 -34.44 -0.29 -13.44 16 20 H 0.06 1.48 7.74 -52.48 -0.41 1.08 16 21 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 22 N -0.88 -22.82 11.40 55.43 0.63 -22.18 16 23 Si 0.89 19.95 29.54 -169.99 -5.02 14.93 16 24 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 25 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 27 C 0.10 2.12 4.54 -3.56 -0.02 2.10 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.09 1.30 6.99 -51.93 -0.36 0.94 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.16 1.76 8.06 -52.49 -0.42 1.34 16 36 H 0.14 1.68 8.06 -52.48 -0.42 1.25 16 37 H 0.14 2.32 7.40 -52.48 -0.39 1.94 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.08 1.48 7.03 -51.93 -0.36 1.12 16 40 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 43 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.26 6.54 8.31 -40.82 -0.34 6.20 16 45 H 0.12 2.84 2.87 -51.93 -0.15 2.69 16 46 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 369.87 15.07 5.57 5.57 Total: -1.00 -29.83 369.87 -8.68 -38.51 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -7.15 Total: 5.29 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: -1.92 Total: -0.53 kcal Atomic # 7 Polarization: -44.95 SS G_CDS: 0.00 Total: -44.95 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -0.16 Total: -18.83 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.83 -8.68 -38.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597904117.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.040 kcal (2) G-P(sol) polarization free energy of solvation -29.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds