Wall clock time and date at job start Tue Mar 31 2020 14:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47236 * 2 1 4 4 O 1.42901 * 109.47058 * 120.00271 * 2 1 3 5 5 C 1.35429 * 116.99818 * 150.00216 * 4 2 1 6 6 N 1.32241 * 119.80131 * 0.26342 * 5 4 2 7 7 C 1.31879 * 121.79893 * 180.27159 * 6 5 4 8 8 C 1.38364 * 121.18231 * 359.74860 * 7 6 5 9 9 C 1.38328 * 119.45997 * 359.97438 * 8 7 6 10 10 C 1.39982 * 118.35346 * 359.97438 * 9 8 7 11 11 C 1.47522 * 120.59975 * 180.02562 * 10 9 8 12 12 O 1.21592 * 119.99978 * 233.81887 * 11 10 9 13 13 N 1.34774 * 120.00303 * 53.81598 * 11 10 9 14 14 C 1.46922 * 120.63233 * 175.78748 * 13 11 10 15 15 C 1.53191 * 108.89288 * 233.67605 * 14 13 11 16 16 C 1.53045 * 109.31318 * 305.29370 * 15 14 13 17 17 C 1.53039 * 109.53498 * 61.36508 * 16 15 14 18 18 H 1.09001 * 109.50100 * 58.62476 * 17 16 15 19 19 C 1.50702 * 109.49907 * 178.68162 * 17 16 15 20 20 H 1.08003 * 119.99787 * 0.02562 * 19 17 16 21 21 C 1.37876 * 120.00687 * 179.97438 * 19 17 16 22 22 N 1.31521 * 119.99254 * 0.02562 * 21 19 17 23 23 Si 1.86798 * 120.00376 * 180.02562 * 21 19 17 24 24 H 1.48492 * 109.47331 * 90.00103 * 23 21 19 25 25 H 1.48499 * 109.46782 * 210.00076 * 23 21 19 26 26 H 1.48492 * 109.46769 * 329.99693 * 23 21 19 27 27 C 1.47205 * 120.80742 * 355.92829 * 13 11 10 28 28 H 1.08997 * 109.46977 * 299.99831 * 1 2 3 29 29 H 1.08997 * 109.47002 * 59.99785 * 1 2 3 30 30 H 1.09001 * 109.47396 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46977 * 240.00169 * 2 1 3 32 32 H 1.08997 * 109.47301 * 300.00032 * 3 2 1 33 33 H 1.08997 * 109.47000 * 60.00183 * 3 2 1 34 34 H 1.09005 * 109.46638 * 179.97438 * 3 2 1 35 35 H 1.07993 * 119.40652 * 179.72750 * 7 6 5 36 36 H 1.08007 * 120.26229 * 179.97438 * 8 7 6 37 37 H 1.08006 * 120.82391 * 180.02562 * 9 8 7 38 38 H 1.09004 * 109.58523 * 113.82050 * 14 13 11 39 39 H 1.08999 * 109.58702 * 353.53046 * 14 13 11 40 40 H 1.08998 * 109.49793 * 65.24301 * 15 14 13 41 41 H 1.08998 * 109.50161 * 185.34487 * 15 14 13 42 42 H 1.08999 * 109.46009 * 181.38195 * 16 15 14 43 43 H 1.08998 * 109.46438 * 301.36143 * 16 15 14 44 44 H 0.97002 * 119.99588 * 179.97438 * 22 21 19 45 45 H 1.08996 * 109.54142 * 6.53556 * 27 13 11 46 46 H 1.09006 * 109.67441 * 246.23012 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 3.1965 -1.3118 1.0654 6 7 3.8611 -1.2854 -0.0776 7 6 5.0204 -1.8974 -0.2216 8 6 5.5978 -2.5939 0.8253 9 6 4.9486 -2.6495 2.0455 10 6 3.7198 -1.9916 2.1753 11 6 2.9852 -2.0183 3.4543 12 8 1.8275 -2.3891 3.4829 13 7 3.5972 -1.6318 4.5912 14 6 2.8532 -1.5650 5.8564 15 6 3.0295 -0.1691 6.4623 16 6 4.5224 0.1393 6.5974 17 6 5.1746 0.1278 5.2130 18 1 4.6878 0.8657 4.5753 19 6 6.6380 0.4634 5.3435 20 1 7.0612 0.6644 6.3166 21 6 7.4369 0.5127 4.2209 22 7 6.9216 0.2674 3.0359 23 14 9.2509 0.9279 4.3829 24 1 10.0293 -0.3215 4.5778 25 1 9.7141 1.6122 3.1490 26 1 9.4513 1.8233 5.5504 27 6 5.0227 -1.2647 4.5928 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.1301 1.4424 0.0005 35 1 5.5280 -1.8544 -1.1739 36 1 6.5477 -3.0900 0.6907 37 1 5.3794 -3.1866 2.8776 38 1 3.2392 -2.3146 6.5473 39 1 1.7958 -1.7510 5.6688 40 1 2.5625 0.5711 5.8127 41 1 2.5611 -0.1376 7.4461 42 1 4.6507 1.1221 7.0510 43 1 4.9937 -0.6155 7.2268 44 1 7.4836 0.3024 2.2461 45 1 5.3970 -1.2517 3.5692 46 1 5.5876 -1.9895 5.1792 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597904117.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:26 Heat of formation + Delta-G solvation = -62.008778 kcal Electronic energy + Delta-G solvation = -28458.895811 eV Core-core repulsion = 24733.861277 eV Total energy + Delta-G solvation = -3725.034533 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.99296 -40.59870 -39.15189 -38.31522 -35.04866 -34.33850 -34.21808 -32.98130 -31.64541 -31.02369 -28.21275 -27.02357 -26.71149 -25.04976 -24.69035 -23.28145 -22.20338 -21.63589 -20.26496 -19.34945 -18.55714 -17.99824 -17.84149 -17.09553 -16.66539 -16.47651 -16.15946 -15.83164 -15.36496 -15.28693 -15.13447 -14.85233 -14.56308 -14.33613 -14.23205 -14.00699 -13.74557 -13.49699 -13.33791 -13.26127 -13.21426 -12.88909 -12.83370 -12.69753 -12.29958 -12.24122 -11.94141 -11.86811 -11.77035 -11.67499 -11.30973 -11.07499 -10.88986 -10.68642 -10.49094 -10.33762 -9.54361 -9.35098 -8.05646 -6.19015 -0.06932 0.35394 1.45355 1.48791 1.56341 1.62440 2.03221 2.17969 2.47368 2.84495 3.20374 3.30596 3.65558 3.85345 3.94266 4.00879 4.07136 4.09582 4.12292 4.22924 4.24673 4.30146 4.56037 4.57337 4.63997 4.67684 4.78174 4.80157 4.81506 4.84703 4.85444 4.94853 5.04124 5.16010 5.18488 5.19123 5.22749 5.23528 5.25481 5.52456 5.59688 5.65710 5.86258 6.00188 6.28876 6.32000 6.53355 6.82616 6.88092 7.16833 7.48818 8.98431 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.011086 B = 0.005765 C = 0.004723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2525.075629 B = 4855.797600 C = 5926.748288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.072 3.928 3 C -0.161 4.161 4 O -0.314 6.314 5 C 0.346 3.654 6 N -0.549 5.549 7 C 0.156 3.844 8 C -0.200 4.200 9 C 0.000 4.000 10 C -0.219 4.219 11 C 0.567 3.433 12 O -0.580 6.580 13 N -0.602 5.602 14 C 0.109 3.891 15 C -0.123 4.123 16 C -0.106 4.106 17 C 0.039 3.961 18 H -0.017 1.017 19 C -0.536 4.536 20 H 0.055 0.945 21 C 0.027 3.973 22 N -0.899 5.899 23 Si 0.949 3.051 24 H -0.271 1.271 25 H -0.288 1.288 26 H -0.277 1.277 27 C 0.106 3.894 28 H 0.056 0.944 29 H 0.108 0.892 30 H 0.058 0.942 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.050 0.950 34 H 0.038 0.962 35 H 0.200 0.800 36 H 0.173 0.827 37 H 0.144 0.856 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.040 0.960 41 H 0.099 0.901 42 H 0.051 0.949 43 H 0.061 0.939 44 H 0.263 0.737 45 H 0.116 0.884 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.589 -3.927 -5.910 8.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.016 3.984 3 C -0.218 4.218 4 O -0.221 6.221 5 C 0.167 3.833 6 N -0.273 5.273 7 C 0.000 4.000 8 C -0.219 4.219 9 C -0.026 4.026 10 C -0.225 4.225 11 C 0.356 3.644 12 O -0.462 6.462 13 N -0.332 5.332 14 C -0.013 4.013 15 C -0.161 4.161 16 C -0.143 4.143 17 C 0.020 3.980 18 H 0.001 0.999 19 C -0.575 4.575 20 H 0.074 0.926 21 C -0.174 4.174 22 N -0.537 5.537 23 Si 0.776 3.224 24 H -0.197 1.197 25 H -0.214 1.214 26 H -0.202 1.202 27 C -0.016 4.016 28 H 0.075 0.925 29 H 0.126 0.874 30 H 0.077 0.923 31 H 0.108 0.892 32 H 0.120 0.880 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.217 0.783 36 H 0.190 0.810 37 H 0.162 0.838 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.059 0.941 41 H 0.117 0.883 42 H 0.069 0.931 43 H 0.080 0.920 44 H 0.072 0.928 45 H 0.134 0.866 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.717 -3.623 -6.523 9.400 hybrid contribution 1.472 0.185 0.725 1.651 sum -4.245 -3.438 -5.798 7.966 Atomic orbital electron populations 1.21892 0.91077 1.03026 1.03902 1.22648 0.95933 0.92736 0.87049 1.22167 1.00785 0.95538 1.03317 1.86343 1.31517 1.64085 1.40193 1.19695 0.85837 0.88735 0.89013 1.67332 1.12068 1.24683 1.23174 1.23211 0.88411 0.88078 1.00318 1.22159 1.03018 1.03937 0.92822 1.21634 0.89530 0.92704 0.98744 1.19814 0.99693 1.08943 0.94071 1.18181 0.85551 0.76699 0.84011 1.90655 1.18310 1.50197 1.87063 1.48522 1.12850 1.64031 1.07824 1.21690 0.97050 0.98101 0.84425 1.21876 0.97363 0.95618 1.01270 1.21542 0.94129 1.00665 0.98013 1.18879 0.94852 0.92041 0.92268 0.99860 1.21353 0.94261 1.48344 0.93513 0.92648 1.25614 1.01900 0.94745 0.95133 1.69968 1.36534 1.48993 0.98182 0.85693 0.81153 0.78433 0.77125 1.19685 1.21366 1.20228 1.22443 0.76718 0.96942 1.05464 0.92461 0.87355 0.92320 0.89208 0.88023 0.93118 0.94235 0.78285 0.80994 0.83832 0.89910 0.90350 0.94098 0.88290 0.93071 0.91988 0.92806 0.86621 0.93229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.47 9.56 71.98 0.69 -2.78 16 2 C 0.07 2.22 3.11 30.59 0.10 2.32 16 3 C -0.16 -4.68 9.53 71.98 0.69 -3.99 16 4 O -0.31 -12.88 8.96 -83.95 -0.75 -13.63 16 5 C 0.35 14.15 7.46 85.13 0.64 14.78 16 6 N -0.55 -19.19 8.64 -307.98 -2.66 -21.86 16 7 C 0.16 4.45 11.17 84.72 0.95 5.39 16 8 C -0.20 -5.76 10.09 22.32 0.23 -5.54 16 9 C 0.00 -0.01 7.56 22.71 0.17 0.16 16 10 C -0.22 -9.20 4.92 -19.91 -0.10 -9.30 16 11 C 0.57 25.59 6.89 86.69 0.60 26.19 16 12 O -0.58 -28.36 16.18 -0.71 -0.01 -28.37 16 13 N -0.60 -25.59 2.98 -821.97 -2.45 -28.04 16 14 C 0.11 3.96 6.41 86.36 0.55 4.52 16 15 C -0.12 -4.28 6.08 30.67 0.19 -4.09 16 16 C -0.11 -4.20 5.11 30.62 0.16 -4.04 16 17 C 0.04 1.88 2.25 -11.46 -0.03 1.85 16 18 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 19 C -0.54 -27.54 8.56 25.60 0.22 -27.32 16 20 H 0.06 2.81 7.74 -2.91 -0.02 2.79 16 21 C 0.03 1.36 5.30 84.65 0.45 1.81 16 22 N -0.90 -46.46 11.40 21.45 0.24 -46.22 16 23 Si 0.95 40.46 29.54 68.60 2.03 42.49 16 24 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 25 H -0.29 -12.24 7.11 99.48 0.71 -11.53 16 26 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 27 C 0.11 4.74 4.54 86.31 0.39 5.14 16 28 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.09 2.67 6.99 -2.39 -0.02 2.66 16 32 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 35 H 0.20 3.77 8.06 -2.91 -0.02 3.75 16 36 H 0.17 3.65 8.06 -2.91 -0.02 3.63 16 37 H 0.14 4.80 7.40 -2.91 -0.02 4.78 16 38 H 0.08 2.61 8.14 -2.38 -0.02 2.59 16 39 H 0.08 2.89 7.03 -2.39 -0.02 2.87 16 40 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 42 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 44 H 0.26 12.99 8.31 -92.71 -0.77 12.22 16 45 H 0.12 5.43 2.87 -2.39 -0.01 5.42 16 46 H 0.05 2.16 8.14 -2.38 -0.02 2.14 16 Total: -1.00 -66.77 369.87 3.24 -63.53 By element: Atomic # 1 Polarization: 26.04 SS G_CDS: 0.97 Total: 27.01 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: 5.88 Total: 5.10 kcal Atomic # 7 Polarization: -91.25 SS G_CDS: -4.87 Total: -96.12 kcal Atomic # 8 Polarization: -41.24 SS G_CDS: -0.76 Total: -42.00 kcal Atomic # 14 Polarization: 40.46 SS G_CDS: 2.03 Total: 42.49 kcal Total: -66.77 3.24 -63.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597904117.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.519 kcal (2) G-P(sol) polarization free energy of solvation -66.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds