Wall clock time and date at job start Tue Mar 31 2020 14:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46655 * 2 1 4 4 O 1.42903 * 109.46964 * 240.00281 * 2 1 3 5 5 C 1.35669 * 117.00035 * 269.99572 * 4 2 1 6 6 C 1.39283 * 119.61630 * 180.02562 * 5 4 2 7 7 C 1.38329 * 119.30205 * 179.97438 * 6 5 4 8 8 C 1.38781 * 118.56302 * 0.02562 * 7 6 5 9 9 C 1.39133 * 119.18464 * 0.02562 * 8 7 6 10 10 C 1.48146 * 119.68580 * 180.02562 * 9 8 7 11 11 O 1.21518 * 120.00554 * 9.68673 * 10 9 8 12 12 N 1.34777 * 119.99921 * 189.68414 * 10 9 8 13 13 C 1.46928 * 120.62910 * 7.68167 * 12 10 9 14 14 C 1.53625 * 108.54519 * 126.36577 * 13 12 10 15 15 C 1.53042 * 109.24085 * 54.85662 * 14 13 12 16 16 C 1.53048 * 109.53572 * 298.50863 * 15 14 13 17 17 H 1.08991 * 109.50019 * 301.41528 * 16 15 14 18 18 C 1.50701 * 109.52271 * 181.33190 * 16 15 14 19 19 H 1.08007 * 119.99891 * 0.15309 * 18 16 15 20 20 C 1.37875 * 119.99974 * 180.14948 * 18 16 15 21 21 N 1.31513 * 119.99769 * 359.97438 * 20 18 16 22 22 Si 1.86800 * 119.99771 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47137 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47092 * 119.99859 * 22 20 18 25 25 H 1.48501 * 109.47110 * 239.99515 * 22 20 18 26 26 C 1.46924 * 120.63189 * 187.95455 * 12 10 9 27 27 N 1.31899 * 119.61371 * 359.72823 * 5 4 2 28 28 H 1.08997 * 109.46660 * 299.99681 * 1 2 3 29 29 H 1.09004 * 109.46742 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47141 * 60.00071 * 1 2 3 31 31 H 1.08996 * 109.47730 * 119.99998 * 2 1 3 32 32 H 1.08997 * 109.47326 * 60.00726 * 3 2 1 33 33 H 1.09006 * 109.46723 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.47565 * 299.99621 * 3 2 1 35 35 H 1.07994 * 120.34642 * 359.97438 * 6 5 4 36 36 H 1.07999 * 120.71617 * 180.02562 * 7 6 5 37 37 H 1.07993 * 120.40782 * 180.02562 * 8 7 6 38 38 H 1.08998 * 109.58336 * 246.19808 * 13 12 10 39 39 H 1.09000 * 109.58564 * 6.62609 * 13 12 10 40 40 H 1.09004 * 109.63538 * 294.86483 * 14 13 12 41 41 H 1.09000 * 109.43058 * 174.72125 * 14 13 12 42 42 H 1.09000 * 109.46204 * 178.49404 * 15 14 13 43 43 H 1.09000 * 109.45018 * 58.52181 * 15 14 13 44 44 H 0.97006 * 119.99440 * 180.02562 * 21 20 18 45 45 H 1.08999 * 109.59081 * 353.38086 * 26 12 10 46 46 H 1.09004 * 109.58531 * 113.66318 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.2117 -2.0108 -1.0654 6 6 2.6760 -2.7216 -2.1695 7 6 2.8836 -4.0847 -2.0587 8 6 2.6195 -4.6995 -0.8428 9 6 2.1564 -3.9301 0.2199 10 6 1.8715 -4.5748 1.5230 11 8 2.2051 -5.7271 1.7167 12 7 1.2421 -3.8833 2.4936 13 6 0.6839 -2.5515 2.2223 14 6 -0.7950 -2.5476 2.6382 15 6 -0.9094 -2.9911 4.0985 16 6 -0.3722 -4.4168 4.2440 17 1 -0.9367 -5.0862 3.5950 18 6 -0.5151 -4.8651 5.6756 19 1 -0.9484 -4.2009 6.4089 20 6 -0.0929 -6.1233 6.0494 21 7 0.4341 -6.9323 5.1565 22 14 -0.2707 -6.6792 7.8239 23 1 -0.8892 -5.5917 8.6237 24 1 -1.1324 -7.8873 7.8801 25 1 1.0689 -7.0006 8.3785 26 6 1.1065 -4.4442 3.8448 27 7 1.9750 -2.6216 0.0795 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 -0.8900 31 1 1.8935 -0.5138 0.8899 32 1 1.6767 1.9564 0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6767 1.9564 -0.8900 35 1 2.8718 -2.2139 -3.1024 36 1 3.2435 -4.6582 -2.9002 37 1 2.7716 -5.7619 -0.7231 38 1 1.2297 -1.8027 2.7963 39 1 0.7662 -2.3307 1.1581 40 1 -1.3555 -3.2348 2.0043 41 1 -1.1992 -1.5410 2.5309 42 1 -1.9549 -2.9640 4.4054 43 1 -0.3283 -2.3180 4.7288 44 1 0.7309 -7.8176 5.4194 45 1 1.4678 -5.4725 3.8515 46 1 1.6881 -3.8480 4.5480 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597906213.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:30 Heat of formation + Delta-G solvation = -27.700868 kcal Electronic energy + Delta-G solvation = -27981.371454 eV Core-core repulsion = 24257.824623 eV Total energy + Delta-G solvation = -3723.546831 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.06514 -39.26065 -38.07812 -36.58146 -33.75899 -33.30119 -32.58398 -31.59643 -30.28358 -29.62720 -27.43360 -25.70940 -24.99811 -23.89260 -23.17109 -21.74877 -21.30166 -20.39534 -18.95207 -17.83952 -17.17854 -16.24492 -16.22027 -15.86831 -15.74274 -15.23535 -14.71245 -14.53582 -14.29790 -14.10854 -13.74071 -13.50480 -13.16300 -13.08082 -12.77493 -12.64047 -12.50450 -12.40426 -12.14089 -12.10718 -11.98044 -11.73449 -11.15355 -11.01837 -10.95629 -10.81250 -10.51043 -10.42351 -10.23178 -10.05890 -9.89878 -9.63852 -9.18153 -9.06485 -8.64449 -8.53745 -8.40380 -7.67420 -5.97228 -4.06128 0.70223 1.16979 2.84399 3.09152 3.31072 3.39569 3.42741 3.57776 3.94408 4.15076 4.44708 4.67172 4.78546 4.81186 4.87083 4.92521 5.08402 5.13479 5.32632 5.36290 5.39084 5.54694 5.61898 5.65112 5.68941 5.71252 5.80889 5.90186 5.96750 6.03095 6.08170 6.22983 6.28712 6.38002 6.54144 6.69062 6.74533 6.90288 7.02458 7.10915 7.19794 7.36017 7.60014 7.67036 7.90192 8.02097 8.27943 8.41068 8.80283 8.98399 9.59377 11.07885 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.017378 B = 0.004020 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.890040 B = 6963.201744 C = 8233.124129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.075 3.925 3 C -0.149 4.149 4 O -0.301 6.301 5 C 0.314 3.686 6 C -0.178 4.178 7 C -0.046 4.046 8 C -0.153 4.153 9 C 0.133 3.867 10 C 0.552 3.448 11 O -0.526 6.526 12 N -0.580 5.580 13 C 0.072 3.928 14 C -0.135 4.135 15 C -0.111 4.111 16 C 0.041 3.959 17 H 0.029 0.971 18 C -0.520 4.520 19 H 0.058 0.942 20 C 0.062 3.938 21 N -0.880 5.880 22 Si 0.891 3.109 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 C 0.110 3.890 27 N -0.507 5.507 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.093 0.907 32 H 0.078 0.922 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.142 0.858 36 H 0.147 0.853 37 H 0.151 0.849 38 H 0.052 0.948 39 H 0.136 0.864 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.049 0.951 43 H 0.048 0.952 44 H 0.263 0.737 45 H 0.123 0.877 46 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.610 13.687 -15.326 20.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.019 3.981 3 C -0.206 4.206 4 O -0.209 6.209 5 C 0.134 3.866 6 C -0.199 4.199 7 C -0.071 4.071 8 C -0.175 4.175 9 C -0.003 4.003 10 C 0.337 3.663 11 O -0.402 6.402 12 N -0.311 5.311 13 C -0.051 4.051 14 C -0.173 4.173 15 C -0.149 4.149 16 C 0.022 3.978 17 H 0.047 0.953 18 C -0.558 4.558 19 H 0.077 0.923 20 C -0.140 4.140 21 N -0.517 5.517 22 Si 0.719 3.281 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.210 1.210 26 C -0.010 4.010 27 N -0.234 5.234 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.111 0.889 32 H 0.097 0.903 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.160 0.840 36 H 0.165 0.835 37 H 0.169 0.831 38 H 0.071 0.929 39 H 0.152 0.848 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.073 0.927 45 H 0.141 0.859 46 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 3.601 13.549 -14.693 20.309 hybrid contribution 0.059 -0.694 0.558 0.892 sum 3.660 12.856 -14.135 19.454 Atomic orbital electron populations 1.22306 0.94632 1.03281 1.02791 1.22493 0.94621 0.92962 0.88052 1.21897 1.01916 0.93841 1.02995 1.86289 1.80220 1.15622 1.38754 1.19996 0.91717 0.84845 0.90031 1.21207 1.05399 0.94426 0.98855 1.21432 0.94789 0.93389 0.97488 1.22010 1.00505 1.02547 0.92398 1.21306 0.95541 0.87891 0.95563 1.17888 0.79972 0.85722 0.82745 1.90815 1.53633 1.15752 1.80030 1.48361 1.52747 1.17920 1.12031 1.23004 0.92992 0.83749 1.05345 1.22069 0.96262 0.99995 0.98980 1.21639 1.00271 0.99582 0.93378 1.18952 0.91290 0.90762 0.96808 0.95314 1.21126 1.41256 0.99512 0.93954 0.92328 1.25058 0.94997 0.96652 0.97340 1.69907 1.40580 1.08187 1.33063 0.86545 0.77764 0.78625 0.85128 1.19809 1.21015 1.20992 1.22368 1.00203 1.01528 0.76944 1.67429 1.20603 1.11612 1.23741 0.90677 0.91646 0.92005 0.88879 0.90336 0.91888 0.91735 0.83970 0.83538 0.83115 0.92932 0.84813 0.92607 0.92562 0.93246 0.93311 0.92729 0.85948 0.93784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.68 9.22 37.16 0.34 -1.34 16 2 C 0.07 0.78 2.88 -26.73 -0.08 0.71 16 3 C -0.15 -1.20 9.56 37.16 0.36 -0.84 16 4 O -0.30 -3.56 9.76 -18.71 -0.18 -3.74 16 5 C 0.31 4.04 7.46 -17.13 -0.13 3.91 16 6 C -0.18 -1.88 10.05 -39.16 -0.39 -2.27 16 7 C -0.05 -0.47 10.16 -39.35 -0.40 -0.87 16 8 C -0.15 -2.12 9.62 -39.05 -0.38 -2.50 16 9 C 0.13 2.23 6.57 -83.03 -0.55 1.68 16 10 C 0.55 11.70 7.65 -12.19 -0.09 11.60 16 11 O -0.53 -12.93 15.79 5.35 0.08 -12.85 16 12 N -0.58 -12.36 2.97 -173.50 -0.51 -12.87 16 13 C 0.07 1.25 5.38 -3.48 -0.02 1.23 16 14 C -0.13 -2.34 6.10 -26.38 -0.16 -2.50 16 15 C -0.11 -2.29 5.11 -26.68 -0.14 -2.43 16 16 C 0.04 1.04 2.25 -91.65 -0.21 0.83 16 17 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 18 C -0.52 -14.26 8.57 -34.44 -0.29 -14.56 16 19 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 20 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 21 N -0.88 -25.84 11.39 55.43 0.63 -25.21 16 22 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 23 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 26 C 0.11 2.72 5.41 -3.71 -0.02 2.70 16 27 N -0.51 -7.56 4.65 -9.88 -0.05 -7.60 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.75 7.10 -51.93 -0.37 0.38 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.09 1.11 6.09 -51.93 -0.32 0.80 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16 37 H 0.15 2.07 7.66 -52.49 -0.40 1.67 16 38 H 0.05 0.87 8.13 -51.93 -0.42 0.45 16 39 H 0.14 2.12 1.94 -83.39 -0.16 1.96 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 45 H 0.12 3.51 5.12 -51.93 -0.27 3.24 16 46 H 0.04 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 364.47 15.07 5.49 5.49 Total: -1.00 -31.74 364.47 -8.78 -40.52 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -6.98 Total: 2.88 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: -2.25 Total: -2.98 kcal Atomic # 7 Polarization: -45.76 SS G_CDS: 0.07 Total: -45.69 kcal Atomic # 8 Polarization: -16.49 SS G_CDS: -0.10 Total: -16.59 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.74 -8.78 -40.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597906213.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.816 kcal (2) G-P(sol) polarization free energy of solvation -31.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds