Wall clock time and date at job start Tue Mar 31 2020 14:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46655 * 2 1 4 4 O 1.42903 * 109.46964 * 240.00281 * 2 1 3 5 5 C 1.35669 * 117.00035 * 269.99572 * 4 2 1 6 6 C 1.39283 * 119.61630 * 180.02562 * 5 4 2 7 7 C 1.38329 * 119.30205 * 179.97438 * 6 5 4 8 8 C 1.38781 * 118.56302 * 0.02562 * 7 6 5 9 9 C 1.39133 * 119.18464 * 0.02562 * 8 7 6 10 10 C 1.48146 * 119.68580 * 180.02562 * 9 8 7 11 11 O 1.21518 * 120.00554 * 9.68673 * 10 9 8 12 12 N 1.34777 * 119.99921 * 189.68414 * 10 9 8 13 13 C 1.46928 * 120.62910 * 7.68167 * 12 10 9 14 14 C 1.53625 * 108.54519 * 126.36577 * 13 12 10 15 15 C 1.53042 * 109.24085 * 54.85662 * 14 13 12 16 16 C 1.53048 * 109.53572 * 298.50863 * 15 14 13 17 17 H 1.08991 * 109.50019 * 301.41528 * 16 15 14 18 18 C 1.50701 * 109.52271 * 181.33190 * 16 15 14 19 19 H 1.08007 * 119.99891 * 0.15309 * 18 16 15 20 20 C 1.37875 * 119.99974 * 180.14948 * 18 16 15 21 21 N 1.31513 * 119.99769 * 359.97438 * 20 18 16 22 22 Si 1.86800 * 119.99771 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47137 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47092 * 119.99859 * 22 20 18 25 25 H 1.48501 * 109.47110 * 239.99515 * 22 20 18 26 26 C 1.46924 * 120.63189 * 187.95455 * 12 10 9 27 27 N 1.31899 * 119.61371 * 359.72823 * 5 4 2 28 28 H 1.08997 * 109.46660 * 299.99681 * 1 2 3 29 29 H 1.09004 * 109.46742 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47141 * 60.00071 * 1 2 3 31 31 H 1.08996 * 109.47730 * 119.99998 * 2 1 3 32 32 H 1.08997 * 109.47326 * 60.00726 * 3 2 1 33 33 H 1.09006 * 109.46723 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.47565 * 299.99621 * 3 2 1 35 35 H 1.07994 * 120.34642 * 359.97438 * 6 5 4 36 36 H 1.07999 * 120.71617 * 180.02562 * 7 6 5 37 37 H 1.07993 * 120.40782 * 180.02562 * 8 7 6 38 38 H 1.08998 * 109.58336 * 246.19808 * 13 12 10 39 39 H 1.09000 * 109.58564 * 6.62609 * 13 12 10 40 40 H 1.09004 * 109.63538 * 294.86483 * 14 13 12 41 41 H 1.09000 * 109.43058 * 174.72125 * 14 13 12 42 42 H 1.09000 * 109.46204 * 178.49404 * 15 14 13 43 43 H 1.09000 * 109.45018 * 58.52181 * 15 14 13 44 44 H 0.97006 * 119.99440 * 180.02562 * 21 20 18 45 45 H 1.08999 * 109.59081 * 353.38086 * 26 12 10 46 46 H 1.09004 * 109.58531 * 113.66318 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.2117 -2.0108 -1.0654 6 6 2.6760 -2.7216 -2.1695 7 6 2.8836 -4.0847 -2.0587 8 6 2.6195 -4.6995 -0.8428 9 6 2.1564 -3.9301 0.2199 10 6 1.8715 -4.5748 1.5230 11 8 2.2051 -5.7271 1.7167 12 7 1.2421 -3.8833 2.4936 13 6 0.6839 -2.5515 2.2223 14 6 -0.7950 -2.5476 2.6382 15 6 -0.9094 -2.9911 4.0985 16 6 -0.3722 -4.4168 4.2440 17 1 -0.9367 -5.0862 3.5950 18 6 -0.5151 -4.8651 5.6756 19 1 -0.9484 -4.2009 6.4089 20 6 -0.0929 -6.1233 6.0494 21 7 0.4341 -6.9323 5.1565 22 14 -0.2707 -6.6792 7.8239 23 1 -0.8892 -5.5917 8.6237 24 1 -1.1324 -7.8873 7.8801 25 1 1.0689 -7.0006 8.3785 26 6 1.1065 -4.4442 3.8448 27 7 1.9750 -2.6216 0.0795 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 -0.8900 31 1 1.8935 -0.5138 0.8899 32 1 1.6767 1.9564 0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6767 1.9564 -0.8900 35 1 2.8718 -2.2139 -3.1024 36 1 3.2435 -4.6582 -2.9002 37 1 2.7716 -5.7619 -0.7231 38 1 1.2297 -1.8027 2.7963 39 1 0.7662 -2.3307 1.1581 40 1 -1.3555 -3.2348 2.0043 41 1 -1.1992 -1.5410 2.5309 42 1 -1.9549 -2.9640 4.4054 43 1 -0.3283 -2.3180 4.7288 44 1 0.7309 -7.8176 5.4194 45 1 1.4678 -5.4725 3.8515 46 1 1.6881 -3.8480 4.5480 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597906213.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:29 Heat of formation + Delta-G solvation = -47.188748 kcal Electronic energy + Delta-G solvation = -27982.216512 eV Core-core repulsion = 24257.824623 eV Total energy + Delta-G solvation = -3724.391889 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.18462 -40.67950 -39.18702 -38.26438 -35.45302 -34.24628 -33.94568 -33.18642 -31.54251 -31.25234 -28.12261 -27.37817 -26.75619 -25.04912 -24.41449 -23.44861 -22.14607 -21.88154 -20.54413 -18.93307 -18.78918 -18.11329 -17.25844 -16.91454 -16.87497 -16.82752 -16.40958 -16.07294 -15.48935 -15.30654 -15.05103 -14.81970 -14.59196 -14.37528 -14.26675 -14.05114 -13.85474 -13.51326 -13.20744 -13.12330 -13.08523 -12.91588 -12.85524 -12.59968 -12.32529 -12.25744 -11.97175 -11.86094 -11.71625 -11.63741 -11.37311 -11.11110 -11.00099 -10.95291 -10.55871 -9.96096 -9.66695 -9.37933 -8.11690 -6.29709 -0.40632 0.21419 1.39298 1.40482 1.53041 1.71823 1.95691 2.08360 2.41349 2.73348 2.92968 3.16183 3.65870 3.89052 3.98918 3.99427 4.08082 4.14351 4.18284 4.21487 4.33103 4.36021 4.45467 4.58553 4.74892 4.77511 4.81049 4.87889 4.89454 4.93051 5.00301 5.01988 5.07644 5.12425 5.21459 5.25899 5.28397 5.32842 5.36384 5.43194 5.54842 5.63912 5.85393 5.95467 6.17717 6.30932 6.49354 6.65499 6.82719 7.16447 7.40579 8.92081 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.017378 B = 0.004020 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.890040 B = 6963.201744 C = 8233.124129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.068 3.932 3 C -0.144 4.144 4 O -0.300 6.300 5 C 0.304 3.696 6 C -0.156 4.156 7 C -0.028 4.028 8 C -0.155 4.155 9 C 0.102 3.898 10 C 0.543 3.457 11 O -0.577 6.577 12 N -0.588 5.588 13 C 0.072 3.928 14 C -0.127 4.127 15 C -0.104 4.104 16 C 0.040 3.960 17 H -0.015 1.015 18 C -0.536 4.536 19 H 0.063 0.937 20 C 0.009 3.991 21 N -0.915 5.915 22 Si 0.961 3.039 23 H -0.260 1.260 24 H -0.282 1.282 25 H -0.282 1.282 26 C 0.122 3.878 27 N -0.518 5.518 28 H 0.089 0.911 29 H 0.045 0.955 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.181 0.819 36 H 0.194 0.806 37 H 0.143 0.857 38 H 0.062 0.938 39 H 0.157 0.843 40 H 0.042 0.958 41 H 0.100 0.900 42 H 0.053 0.947 43 H 0.056 0.944 44 H 0.260 0.740 45 H 0.080 0.920 46 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.661 16.531 -17.312 24.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.012 3.988 3 C -0.201 4.201 4 O -0.207 6.207 5 C 0.123 3.877 6 C -0.177 4.177 7 C -0.053 4.053 8 C -0.177 4.177 9 C -0.032 4.032 10 C 0.331 3.669 11 O -0.457 6.457 12 N -0.318 5.318 13 C -0.050 4.050 14 C -0.165 4.165 15 C -0.142 4.142 16 C 0.021 3.979 17 H 0.003 0.997 18 C -0.575 4.575 19 H 0.081 0.919 20 C -0.190 4.190 21 N -0.554 5.554 22 Si 0.786 3.214 23 H -0.184 1.184 24 H -0.208 1.208 25 H -0.208 1.208 26 C 0.000 4.000 27 N -0.246 5.246 28 H 0.108 0.892 29 H 0.065 0.935 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.111 0.889 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.199 0.801 36 H 0.211 0.789 37 H 0.161 0.839 38 H 0.081 0.919 39 H 0.173 0.827 40 H 0.061 0.939 41 H 0.118 0.882 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.069 0.931 45 H 0.098 0.902 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 3.634 16.443 -16.687 23.707 hybrid contribution 0.076 -1.507 1.046 1.836 sum 3.710 14.936 -15.642 21.943 Atomic orbital electron populations 1.22299 0.94010 1.02376 1.04107 1.22664 0.95202 0.93968 0.86980 1.21898 1.01800 0.92231 1.04217 1.86311 1.80234 1.14921 1.39267 1.20348 0.91912 0.85406 0.90005 1.21722 1.02297 0.94352 0.99288 1.21886 0.92918 0.93553 0.96912 1.22127 1.00054 1.02260 0.93218 1.20582 0.99577 0.89025 0.94002 1.18638 0.78724 0.85298 0.84275 1.90761 1.55526 1.18044 1.81414 1.48410 1.53222 1.19335 1.10808 1.23318 0.92771 0.81763 1.07103 1.22035 0.96319 1.01962 0.96149 1.21529 1.00164 0.96492 0.96033 1.18880 0.91126 0.92909 0.95000 0.99720 1.21531 1.40960 0.99863 0.95105 0.91876 1.25925 0.94595 0.96830 1.01646 1.70108 1.41643 1.08371 1.35270 0.85465 0.77717 0.78314 0.79925 1.18407 1.20752 1.20753 1.21815 0.99619 0.99298 0.79249 1.67036 1.21504 1.10678 1.25374 0.89248 0.93541 0.90889 0.90667 0.88877 0.92084 0.90752 0.80137 0.78927 0.83889 0.91931 0.82678 0.93914 0.88166 0.92867 0.92488 0.93060 0.90207 0.94395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.86 9.22 71.98 0.66 -2.20 16 2 C 0.07 1.25 2.88 30.60 0.09 1.34 16 3 C -0.14 -1.89 9.56 71.98 0.69 -1.20 16 4 O -0.30 -6.21 9.76 -89.86 -0.88 -7.08 16 5 C 0.30 7.04 7.46 84.93 0.63 7.68 16 6 C -0.16 -2.62 10.05 22.54 0.23 -2.40 16 7 C -0.03 -0.47 10.16 22.42 0.23 -0.24 16 8 C -0.15 -4.18 9.62 22.61 0.22 -3.96 16 9 C 0.10 3.49 6.57 41.84 0.27 3.76 16 10 C 0.54 24.52 7.65 86.88 0.66 25.18 16 11 O -0.58 -30.83 15.79 -3.77 -0.06 -30.89 16 12 N -0.59 -26.42 2.97 -821.12 -2.44 -28.86 16 13 C 0.07 2.50 5.38 86.51 0.47 2.96 16 14 C -0.13 -4.30 6.10 30.82 0.19 -4.12 16 15 C -0.10 -4.34 5.11 30.62 0.16 -4.18 16 16 C 0.04 2.13 2.25 -11.46 -0.03 2.11 16 17 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 18 C -0.54 -30.45 8.57 25.60 0.22 -30.23 16 19 H 0.06 3.44 7.74 -2.91 -0.02 3.42 16 20 C 0.01 0.54 5.30 84.65 0.45 0.99 16 21 N -0.92 -56.89 11.39 21.45 0.24 -56.65 16 22 Si 0.96 45.07 29.54 68.60 2.03 47.09 16 23 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 24 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 25 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 26 C 0.12 6.49 5.41 86.36 0.47 6.96 16 27 N -0.52 -15.04 4.65 -298.21 -1.39 -16.43 16 28 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.05 0.96 7.10 -2.38 -0.02 0.94 16 30 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 31 H 0.08 1.68 6.09 -2.39 -0.01 1.67 16 32 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 34 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.18 1.73 8.06 -2.91 -0.02 1.70 16 36 H 0.19 1.48 8.06 -2.91 -0.02 1.46 16 37 H 0.14 4.03 7.66 -2.91 -0.02 4.01 16 38 H 0.06 2.04 8.13 -2.39 -0.02 2.02 16 39 H 0.16 4.85 1.94 -64.51 -0.13 4.72 16 40 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 41 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 42 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 44 H 0.26 15.48 8.31 -92.70 -0.77 14.71 16 45 H 0.08 4.97 5.12 -2.39 -0.01 4.95 16 46 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -75.96 364.47 3.97 -71.99 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: 0.86 Total: 18.38 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: 5.60 Total: 2.44 kcal Atomic # 7 Polarization: -98.36 SS G_CDS: -3.58 Total: -101.94 kcal Atomic # 8 Polarization: -37.04 SS G_CDS: -0.94 Total: -37.98 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Total: -75.96 3.97 -71.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597906213.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.805 kcal (2) G-P(sol) polarization free energy of solvation -75.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds