Wall clock time and date at job start Tue Mar 31 2020 14:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47242 * 2 1 4 4 O 1.42896 * 109.47518 * 120.00295 * 2 1 3 5 5 C 1.35672 * 116.99822 * 90.00395 * 4 2 1 6 6 C 1.39285 * 119.61422 * 180.02562 * 5 4 2 7 7 C 1.38333 * 119.30430 * 179.97438 * 6 5 4 8 8 C 1.38791 * 118.55589 * 0.24671 * 7 6 5 9 9 C 1.39121 * 119.18788 * 359.50397 * 8 7 6 10 10 C 1.48154 * 119.68876 * 180.23074 * 9 8 7 11 11 O 1.21518 * 119.99736 * 336.94192 * 10 9 8 12 12 N 1.34781 * 120.00181 * 156.94445 * 10 9 8 13 13 C 1.46924 * 120.62560 * 0.18404 * 12 10 9 14 14 C 1.53197 * 108.77126 * 233.58166 * 13 12 10 15 15 C 1.53043 * 109.31416 * 305.36783 * 14 13 12 16 16 C 1.53044 * 109.53788 * 61.36339 * 15 14 13 17 17 H 1.09004 * 109.49472 * 58.61855 * 16 15 14 18 18 C 1.50691 * 109.49642 * 178.68615 * 16 15 14 19 19 H 1.08000 * 120.00386 * 5.83285 * 18 16 15 20 20 C 1.37875 * 120.00084 * 185.84139 * 18 16 15 21 21 N 1.31521 * 119.99895 * 355.78687 * 20 18 16 22 22 Si 1.86798 * 120.00461 * 175.79106 * 20 18 16 23 23 H 1.48502 * 109.47285 * 94.98913 * 22 20 18 24 24 H 1.48496 * 109.47522 * 214.99038 * 22 20 18 25 25 H 1.48505 * 109.47207 * 334.99446 * 22 20 18 26 26 C 1.46920 * 120.63248 * 179.89823 * 12 10 9 27 27 N 1.31902 * 119.61614 * 359.97086 * 5 4 2 28 28 H 1.09005 * 109.47079 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46992 * 299.99561 * 1 2 3 30 30 H 1.08996 * 109.47703 * 59.99815 * 1 2 3 31 31 H 1.09004 * 109.46657 * 240.00859 * 2 1 3 32 32 H 1.08992 * 109.47290 * 180.02562 * 3 2 1 33 33 H 1.09006 * 109.46890 * 300.00800 * 3 2 1 34 34 H 1.09003 * 109.46768 * 60.00302 * 3 2 1 35 35 H 1.07991 * 120.34905 * 359.97438 * 6 5 4 36 36 H 1.07993 * 120.72426 * 179.97438 * 7 6 5 37 37 H 1.07996 * 120.40114 * 179.75068 * 8 7 6 38 38 H 1.09002 * 109.59251 * 353.36681 * 13 12 10 39 39 H 1.09000 * 109.59188 * 113.65659 * 13 12 10 40 40 H 1.08998 * 109.49544 * 65.31886 * 14 13 12 41 41 H 1.09000 * 109.49807 * 185.41486 * 14 13 12 42 42 H 1.09001 * 109.45788 * 181.38602 * 15 14 13 43 43 H 1.08995 * 109.45832 * 301.35983 * 15 14 13 44 44 H 0.97001 * 119.99735 * 180.02562 * 21 20 18 45 45 H 1.09003 * 109.59011 * 246.20690 * 26 12 10 46 46 H 1.09001 * 109.58450 * 6.62955 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2118 -2.0109 1.0650 6 6 2.6752 -2.7220 2.1694 7 6 2.8819 -4.0853 2.0588 8 6 2.6231 -4.6989 0.8410 9 6 2.1569 -3.9301 -0.2206 10 6 1.8722 -4.5745 -1.5239 11 8 2.4111 -5.6246 -1.8130 12 7 1.0156 -3.9961 -2.3889 13 6 0.3595 -2.7246 -2.0551 14 6 -1.1546 -2.8942 -2.2150 15 6 -1.4604 -3.4086 -3.6236 16 6 -0.7975 -4.7732 -3.8252 17 1 -1.1669 -5.4716 -3.0742 18 6 -1.1259 -5.2936 -5.2008 19 1 -1.6654 -4.6709 -5.8991 20 6 -0.7377 -6.5646 -5.5679 21 7 -0.0097 -7.2921 -4.7490 22 14 -1.2457 -7.2535 -7.2282 23 1 -0.1600 -7.0201 -8.2142 24 1 -1.4960 -8.7119 -7.1036 25 1 -2.4849 -6.5759 -7.6871 26 6 0.7249 -4.6220 -3.6859 27 7 1.9693 -2.6226 -0.0782 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8932 -0.5137 -0.8901 32 1 3.1299 1.4425 -0.0005 33 1 1.6765 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 2.8710 -2.2144 3.1022 36 1 3.2410 -4.6590 2.9003 37 1 2.7781 -5.7608 0.7203 38 1 0.5901 -2.4537 -1.0248 39 1 0.7146 -1.9428 -2.7266 40 1 -1.5202 -3.6101 -1.4789 41 1 -1.6463 -1.9332 -2.0639 42 1 -2.5388 -3.5068 -3.7481 43 1 -1.0724 -2.7045 -4.3595 44 1 0.2637 -8.1862 -5.0075 45 1 1.1074 -3.9924 -4.4894 46 1 1.1967 -5.6035 -3.7319 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597906214.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:33 Heat of formation + Delta-G solvation = -31.299759 kcal Electronic energy + Delta-G solvation = -27927.180119 eV Core-core repulsion = 24203.477229 eV Total energy + Delta-G solvation = -3723.702890 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.05322 -39.28112 -38.07197 -36.60343 -33.72605 -33.29751 -32.58876 -31.61651 -30.29966 -29.68365 -27.43857 -25.71227 -24.98838 -23.90323 -23.19158 -21.76361 -21.29457 -20.38638 -18.92999 -17.86494 -17.22446 -16.25618 -16.22228 -15.88307 -15.77091 -15.23827 -14.69396 -14.58223 -14.27494 -14.10939 -13.70809 -13.53683 -13.23264 -13.07524 -12.73617 -12.65560 -12.51226 -12.42259 -12.15673 -12.11111 -11.98015 -11.73546 -11.11535 -11.03845 -10.93860 -10.85432 -10.52735 -10.46110 -10.25330 -10.05912 -9.90927 -9.67368 -9.21138 -9.03732 -8.68492 -8.57782 -8.44148 -7.70726 -5.99283 -4.07120 0.72904 1.17409 2.84102 3.09614 3.31290 3.39064 3.41721 3.55782 3.85588 4.20277 4.44242 4.67111 4.78352 4.81347 4.86695 4.92644 5.08466 5.13144 5.31638 5.36396 5.38711 5.54396 5.60886 5.62908 5.66440 5.70357 5.80250 5.89436 5.95283 6.03034 6.08124 6.20335 6.28132 6.35854 6.49855 6.66198 6.71486 6.88185 6.99855 7.10753 7.17446 7.31087 7.60314 7.64787 7.86239 7.99659 8.23728 8.39302 8.78175 8.97896 9.58465 11.06970 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.017685 B = 0.003945 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.875006 B = 7095.615766 C = 8283.351685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.077 3.923 3 C -0.149 4.149 4 O -0.301 6.301 5 C 0.314 3.686 6 C -0.178 4.178 7 C -0.046 4.046 8 C -0.154 4.154 9 C 0.135 3.865 10 C 0.554 3.446 11 O -0.528 6.528 12 N -0.580 5.580 13 C 0.078 3.922 14 C -0.136 4.136 15 C -0.111 4.111 16 C 0.041 3.959 17 H 0.032 0.968 18 C -0.521 4.521 19 H 0.058 0.942 20 C 0.064 3.936 21 N -0.880 5.880 22 Si 0.891 3.109 23 H -0.281 1.281 24 H -0.286 1.286 25 H -0.274 1.274 26 C 0.112 3.888 27 N -0.508 5.508 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.143 0.857 36 H 0.147 0.853 37 H 0.150 0.850 38 H 0.127 0.873 39 H 0.055 0.945 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.050 0.950 43 H 0.048 0.952 44 H 0.263 0.737 45 H 0.045 0.955 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.047 14.319 14.453 20.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.021 3.979 3 C -0.206 4.206 4 O -0.209 6.209 5 C 0.134 3.866 6 C -0.199 4.199 7 C -0.071 4.071 8 C -0.175 4.175 9 C -0.002 4.002 10 C 0.338 3.662 11 O -0.405 6.405 12 N -0.310 5.310 13 C -0.045 4.045 14 C -0.174 4.174 15 C -0.149 4.149 16 C 0.022 3.978 17 H 0.050 0.950 18 C -0.560 4.560 19 H 0.076 0.924 20 C -0.140 4.140 21 N -0.517 5.517 22 Si 0.719 3.281 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.199 1.199 26 C -0.008 4.008 27 N -0.235 5.235 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.110 0.890 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.160 0.840 36 H 0.165 0.835 37 H 0.167 0.833 38 H 0.143 0.857 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.067 0.933 44 H 0.073 0.927 45 H 0.064 0.936 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 4.141 14.234 13.772 20.234 hybrid contribution -0.136 -0.790 -0.463 0.926 sum 4.005 13.444 13.309 19.337 Atomic orbital electron populations 1.22322 0.94636 1.03367 1.02765 1.22438 0.94605 0.92882 0.88024 1.21896 1.01897 0.93867 1.02977 1.86288 1.80240 1.15630 1.38738 1.19934 0.91844 0.84805 0.89993 1.21200 1.05470 0.94393 0.98845 1.21424 0.94813 0.93399 0.97462 1.21993 1.00597 1.02489 0.92459 1.21237 0.95400 0.88001 0.95523 1.17890 0.80937 0.84541 0.82782 1.90812 1.51560 1.22044 1.76069 1.48388 1.41288 1.22802 1.18552 1.22711 0.92158 0.85245 1.04402 1.21998 0.95725 1.00118 0.99540 1.21641 1.00121 0.99329 0.93759 1.19044 0.90094 0.91205 0.97428 0.95010 1.21077 1.36840 0.99282 0.98774 0.92377 1.25056 0.94752 0.97038 0.97111 1.69931 1.35294 1.10599 1.35863 0.86591 0.78906 0.78342 0.84234 1.20730 1.21168 1.19885 1.22463 1.00168 0.99332 0.78820 1.67382 1.20281 1.11625 1.24209 0.91531 0.92007 0.90735 0.89022 0.91905 0.90380 0.91725 0.83967 0.83535 0.83252 0.85686 0.92646 0.92601 0.92490 0.93133 0.93313 0.92699 0.93641 0.86555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.68 9.31 37.16 0.35 -1.34 16 2 C 0.08 0.80 2.93 -26.73 -0.08 0.72 16 3 C -0.15 -1.19 9.56 37.16 0.36 -0.83 16 4 O -0.30 -3.57 9.76 -18.72 -0.18 -3.75 16 5 C 0.31 4.06 7.46 -17.13 -0.13 3.93 16 6 C -0.18 -1.89 10.05 -39.16 -0.39 -2.29 16 7 C -0.05 -0.47 10.16 -39.34 -0.40 -0.87 16 8 C -0.15 -2.15 9.62 -39.05 -0.38 -2.53 16 9 C 0.13 2.26 6.42 -83.02 -0.53 1.73 16 10 C 0.55 11.71 7.61 -12.19 -0.09 11.62 16 11 O -0.53 -12.98 15.96 5.35 0.09 -12.89 16 12 N -0.58 -12.26 2.97 -173.50 -0.51 -12.78 16 13 C 0.08 1.34 5.85 -3.71 -0.02 1.32 16 14 C -0.14 -2.33 6.08 -26.61 -0.16 -2.49 16 15 C -0.11 -2.27 5.11 -26.69 -0.14 -2.40 16 16 C 0.04 1.04 2.19 -91.43 -0.20 0.84 16 17 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 18 C -0.52 -14.22 8.48 -34.45 -0.29 -14.51 16 19 H 0.06 1.55 7.75 -52.49 -0.41 1.15 16 20 C 0.06 1.77 5.36 -17.82 -0.10 1.67 16 21 N -0.88 -25.76 11.69 55.43 0.65 -25.12 16 22 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 26 C 0.11 2.77 5.50 -3.49 -0.02 2.75 16 27 N -0.51 -7.59 4.76 -9.87 -0.05 -7.64 16 28 H 0.07 0.75 6.66 -51.93 -0.35 0.41 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.09 1.10 6.85 -51.93 -0.36 0.74 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 36 H 0.15 0.99 8.06 -52.49 -0.42 0.57 16 37 H 0.15 2.07 7.81 -52.49 -0.41 1.66 16 38 H 0.13 1.97 2.10 -75.03 -0.16 1.82 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 43 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 45 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 46 H 0.12 3.32 5.44 -51.93 -0.28 3.03 16 LS Contribution 366.43 15.07 5.52 5.52 Total: -1.00 -31.60 366.43 -8.75 -40.34 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -7.01 Total: 2.69 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: -2.23 Total: -2.69 kcal Atomic # 7 Polarization: -45.62 SS G_CDS: 0.09 Total: -45.53 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: -0.10 Total: -16.64 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.60 -8.75 -40.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597906214.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.045 kcal (2) G-P(sol) polarization free energy of solvation -31.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds