Wall clock time and date at job start Tue Mar 31 2020 14:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47242 * 2 1 4 4 O 1.42896 * 109.47518 * 120.00295 * 2 1 3 5 5 C 1.35672 * 116.99822 * 90.00395 * 4 2 1 6 6 C 1.39285 * 119.61422 * 180.02562 * 5 4 2 7 7 C 1.38333 * 119.30430 * 179.97438 * 6 5 4 8 8 C 1.38791 * 118.55589 * 0.24671 * 7 6 5 9 9 C 1.39121 * 119.18788 * 359.50397 * 8 7 6 10 10 C 1.48154 * 119.68876 * 180.23074 * 9 8 7 11 11 O 1.21518 * 119.99736 * 336.94192 * 10 9 8 12 12 N 1.34781 * 120.00181 * 156.94445 * 10 9 8 13 13 C 1.46924 * 120.62560 * 0.18404 * 12 10 9 14 14 C 1.53197 * 108.77126 * 233.58166 * 13 12 10 15 15 C 1.53043 * 109.31416 * 305.36783 * 14 13 12 16 16 C 1.53044 * 109.53788 * 61.36339 * 15 14 13 17 17 H 1.09004 * 109.49472 * 58.61855 * 16 15 14 18 18 C 1.50691 * 109.49642 * 178.68615 * 16 15 14 19 19 H 1.08000 * 120.00386 * 5.83285 * 18 16 15 20 20 C 1.37875 * 120.00084 * 185.84139 * 18 16 15 21 21 N 1.31521 * 119.99895 * 355.78687 * 20 18 16 22 22 Si 1.86798 * 120.00461 * 175.79106 * 20 18 16 23 23 H 1.48502 * 109.47285 * 94.98913 * 22 20 18 24 24 H 1.48496 * 109.47522 * 214.99038 * 22 20 18 25 25 H 1.48505 * 109.47207 * 334.99446 * 22 20 18 26 26 C 1.46920 * 120.63248 * 179.89823 * 12 10 9 27 27 N 1.31902 * 119.61614 * 359.97086 * 5 4 2 28 28 H 1.09005 * 109.47079 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46992 * 299.99561 * 1 2 3 30 30 H 1.08996 * 109.47703 * 59.99815 * 1 2 3 31 31 H 1.09004 * 109.46657 * 240.00859 * 2 1 3 32 32 H 1.08992 * 109.47290 * 180.02562 * 3 2 1 33 33 H 1.09006 * 109.46890 * 300.00800 * 3 2 1 34 34 H 1.09003 * 109.46768 * 60.00302 * 3 2 1 35 35 H 1.07991 * 120.34905 * 359.97438 * 6 5 4 36 36 H 1.07993 * 120.72426 * 179.97438 * 7 6 5 37 37 H 1.07996 * 120.40114 * 179.75068 * 8 7 6 38 38 H 1.09002 * 109.59251 * 353.36681 * 13 12 10 39 39 H 1.09000 * 109.59188 * 113.65659 * 13 12 10 40 40 H 1.08998 * 109.49544 * 65.31886 * 14 13 12 41 41 H 1.09000 * 109.49807 * 185.41486 * 14 13 12 42 42 H 1.09001 * 109.45788 * 181.38602 * 15 14 13 43 43 H 1.08995 * 109.45832 * 301.35983 * 15 14 13 44 44 H 0.97001 * 119.99735 * 180.02562 * 21 20 18 45 45 H 1.09003 * 109.59011 * 246.20690 * 26 12 10 46 46 H 1.09001 * 109.58450 * 6.62955 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2118 -2.0109 1.0650 6 6 2.6752 -2.7220 2.1694 7 6 2.8819 -4.0853 2.0588 8 6 2.6231 -4.6989 0.8410 9 6 2.1569 -3.9301 -0.2206 10 6 1.8722 -4.5745 -1.5239 11 8 2.4111 -5.6246 -1.8130 12 7 1.0156 -3.9961 -2.3889 13 6 0.3595 -2.7246 -2.0551 14 6 -1.1546 -2.8942 -2.2150 15 6 -1.4604 -3.4086 -3.6236 16 6 -0.7975 -4.7732 -3.8252 17 1 -1.1669 -5.4716 -3.0742 18 6 -1.1259 -5.2936 -5.2008 19 1 -1.6654 -4.6709 -5.8991 20 6 -0.7377 -6.5646 -5.5679 21 7 -0.0097 -7.2921 -4.7490 22 14 -1.2457 -7.2535 -7.2282 23 1 -0.1600 -7.0201 -8.2142 24 1 -1.4960 -8.7119 -7.1036 25 1 -2.4849 -6.5759 -7.6871 26 6 0.7249 -4.6220 -3.6859 27 7 1.9693 -2.6226 -0.0782 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8932 -0.5137 -0.8901 32 1 3.1299 1.4425 -0.0005 33 1 1.6765 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 2.8710 -2.2144 3.1022 36 1 3.2410 -4.6590 2.9003 37 1 2.7781 -5.7608 0.7203 38 1 0.5901 -2.4537 -1.0248 39 1 0.7146 -1.9428 -2.7266 40 1 -1.5202 -3.6101 -1.4789 41 1 -1.6463 -1.9332 -2.0639 42 1 -2.5388 -3.5068 -3.7481 43 1 -1.0724 -2.7045 -4.3595 44 1 0.2637 -8.1862 -5.0075 45 1 1.1074 -3.9924 -4.4894 46 1 1.1967 -5.6035 -3.7319 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597906214.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:32 Heat of formation + Delta-G solvation = -50.593193 kcal Electronic energy + Delta-G solvation = -27928.016745 eV Core-core repulsion = 24203.477229 eV Total energy + Delta-G solvation = -3724.539517 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.17738 -40.69687 -39.17695 -38.28234 -35.42403 -34.24653 -33.92870 -33.20734 -31.60106 -31.26053 -28.12808 -27.37747 -26.74396 -25.06259 -24.42383 -23.45652 -22.13749 -21.87902 -20.50720 -18.99067 -18.78863 -18.12653 -17.30696 -16.94145 -16.91197 -16.77375 -16.42924 -16.04082 -15.48956 -15.30411 -15.09423 -14.80334 -14.56416 -14.40392 -14.28135 -14.03286 -13.83345 -13.53053 -13.20746 -13.13706 -13.10458 -12.91612 -12.86910 -12.57942 -12.38287 -12.25237 -11.93036 -11.86141 -11.73473 -11.65386 -11.41231 -11.09328 -10.99721 -10.92514 -10.59350 -10.04788 -9.67255 -9.40899 -8.13065 -6.29522 -0.37867 0.21079 1.40304 1.40637 1.52482 1.68009 1.95501 2.06786 2.41573 2.68452 2.95598 3.16368 3.64836 3.88911 3.98797 3.99577 4.08123 4.13048 4.17147 4.20976 4.32830 4.34612 4.45087 4.57670 4.73632 4.77359 4.79213 4.87291 4.89359 4.92689 4.98186 5.01759 5.04836 5.11452 5.20152 5.23559 5.27693 5.31528 5.36186 5.42098 5.54517 5.60532 5.83749 5.92586 6.17498 6.30402 6.48515 6.62946 6.83225 7.14510 7.40664 8.92000 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.017685 B = 0.003945 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.875006 B = 7095.615766 C = 8283.351685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.070 3.930 3 C -0.144 4.144 4 O -0.300 6.300 5 C 0.305 3.695 6 C -0.157 4.157 7 C -0.028 4.028 8 C -0.157 4.157 9 C 0.104 3.896 10 C 0.545 3.455 11 O -0.580 6.580 12 N -0.587 5.587 13 C 0.077 3.923 14 C -0.127 4.127 15 C -0.104 4.104 16 C 0.041 3.959 17 H -0.011 1.011 18 C -0.537 4.537 19 H 0.063 0.937 20 C 0.010 3.990 21 N -0.916 5.916 22 Si 0.960 3.040 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.261 1.261 26 C 0.125 3.875 27 N -0.519 5.519 28 H 0.048 0.952 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.181 0.819 36 H 0.193 0.807 37 H 0.142 0.858 38 H 0.148 0.852 39 H 0.066 0.934 40 H 0.043 0.957 41 H 0.100 0.900 42 H 0.053 0.947 43 H 0.057 0.943 44 H 0.260 0.740 45 H 0.040 0.960 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.749 17.112 16.455 24.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.014 3.986 3 C -0.201 4.201 4 O -0.207 6.207 5 C 0.124 3.876 6 C -0.178 4.178 7 C -0.053 4.053 8 C -0.179 4.179 9 C -0.030 4.030 10 C 0.332 3.668 11 O -0.460 6.460 12 N -0.316 5.316 13 C -0.044 4.044 14 C -0.165 4.165 15 C -0.142 4.142 16 C 0.022 3.978 17 H 0.007 0.993 18 C -0.575 4.575 19 H 0.081 0.919 20 C -0.189 4.189 21 N -0.554 5.554 22 Si 0.785 3.215 23 H -0.202 1.202 24 H -0.211 1.211 25 H -0.185 1.185 26 C 0.003 3.997 27 N -0.247 5.247 28 H 0.067 0.933 29 H 0.091 0.909 30 H 0.107 0.893 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.111 0.889 34 H 0.093 0.907 35 H 0.199 0.801 36 H 0.210 0.790 37 H 0.159 0.841 38 H 0.164 0.836 39 H 0.084 0.916 40 H 0.062 0.938 41 H 0.118 0.882 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.069 0.931 45 H 0.059 0.941 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.821 17.076 15.782 23.564 hybrid contribution 0.001 -1.576 -0.968 1.849 sum 3.822 15.500 14.815 21.779 Atomic orbital electron populations 1.22312 0.93951 1.02520 1.04067 1.22612 0.95243 0.93871 0.86904 1.21895 1.01767 0.92259 1.04202 1.86310 1.80252 1.14918 1.39265 1.20293 0.92000 0.85375 0.89967 1.21712 1.02433 0.94308 0.99301 1.21874 0.92943 0.93582 0.96878 1.22111 1.00261 1.02210 0.93346 1.20535 0.99341 0.89153 0.93980 1.18633 0.79856 0.84054 0.84223 1.90758 1.53324 1.24391 1.77523 1.48429 1.41786 1.23965 1.17468 1.23009 0.91846 0.83495 1.06053 1.21956 0.95938 1.01752 0.96841 1.21529 0.99759 0.96658 0.96246 1.18962 0.90560 0.92992 0.95309 0.99280 1.21494 1.36526 0.99690 0.99800 0.91862 1.25921 0.94640 0.97522 1.00864 1.70124 1.36606 1.10719 1.37979 0.85515 0.78924 0.77430 0.79633 1.20208 1.21131 1.18545 1.21909 0.99539 0.97358 0.80874 1.67041 1.21183 1.10661 1.25789 0.93320 0.90903 0.89312 0.90892 0.92127 0.88912 0.90737 0.80149 0.78970 0.84062 0.83607 0.91562 0.93830 0.88166 0.92777 0.92449 0.93063 0.94144 0.90980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.85 9.31 71.98 0.67 -2.18 16 2 C 0.07 1.29 2.93 30.59 0.09 1.38 16 3 C -0.14 -1.89 9.56 71.98 0.69 -1.20 16 4 O -0.30 -6.24 9.76 -89.89 -0.88 -7.12 16 5 C 0.30 7.10 7.46 84.93 0.63 7.73 16 6 C -0.16 -2.68 10.05 22.54 0.23 -2.46 16 7 C -0.03 -0.48 10.16 22.42 0.23 -0.25 16 8 C -0.16 -4.31 9.62 22.61 0.22 -4.09 16 9 C 0.10 3.57 6.42 41.84 0.27 3.83 16 10 C 0.55 24.55 7.61 86.88 0.66 25.21 16 11 O -0.58 -30.93 15.96 -3.77 -0.06 -30.99 16 12 N -0.59 -26.15 2.97 -821.12 -2.44 -28.58 16 13 C 0.08 2.66 5.85 86.36 0.51 3.17 16 14 C -0.13 -4.26 6.08 30.67 0.19 -4.07 16 15 C -0.10 -4.27 5.11 30.62 0.16 -4.11 16 16 C 0.04 2.16 2.19 -11.32 -0.02 2.13 16 17 H -0.01 -0.67 8.14 -2.39 -0.02 -0.68 16 18 C -0.54 -30.26 8.48 25.60 0.22 -30.05 16 19 H 0.06 3.42 7.75 -2.91 -0.02 3.39 16 20 C 0.01 0.58 5.36 84.65 0.45 1.03 16 21 N -0.92 -56.73 11.69 21.45 0.25 -56.48 16 22 Si 0.96 44.89 29.54 68.60 2.03 46.92 16 23 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 24 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 25 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 26 C 0.13 6.59 5.50 86.51 0.48 7.06 16 27 N -0.52 -15.12 4.76 -298.20 -1.42 -16.54 16 28 H 0.05 0.99 6.66 -2.38 -0.02 0.97 16 29 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.07 1.64 6.85 -2.38 -0.02 1.63 16 32 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.09 0.94 8.14 -2.38 -0.02 0.93 16 34 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.18 1.77 8.06 -2.92 -0.02 1.75 16 36 H 0.19 1.56 8.06 -2.91 -0.02 1.54 16 37 H 0.14 4.04 7.81 -2.91 -0.02 4.01 16 38 H 0.15 4.53 2.10 -48.00 -0.10 4.43 16 39 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 42 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 44 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 45 H 0.04 2.10 8.14 -2.39 -0.02 2.08 16 46 H 0.07 4.46 5.44 -2.39 -0.01 4.45 16 Total: -1.00 -75.47 366.43 4.02 -71.45 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: 0.88 Total: 18.20 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: 5.65 Total: 3.14 kcal Atomic # 7 Polarization: -98.00 SS G_CDS: -3.60 Total: -101.60 kcal Atomic # 8 Polarization: -37.17 SS G_CDS: -0.94 Total: -38.11 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -75.47 4.02 -71.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597906214.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.858 kcal (2) G-P(sol) polarization free energy of solvation -75.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds