Wall clock time and date at job start Tue Mar 31 2020 14:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47368 * 2 1 4 4 O 1.42905 * 109.47300 * 180.02562 * 3 2 1 5 5 C 1.35640 * 117.00070 * 179.97438 * 4 3 2 6 6 C 1.39342 * 120.54455 * 359.71942 * 5 4 3 7 7 C 1.38300 * 118.44103 * 179.73531 * 6 5 4 8 8 C 1.38769 * 119.44395 * 0.52202 * 7 6 5 9 9 N 1.31370 * 121.06897 * 359.74071 * 8 7 6 10 10 C 1.32851 * 121.69413 * 0.02562 * 9 8 7 11 11 C 1.47831 * 119.78560 * 179.97438 * 10 9 8 12 12 O 1.21555 * 120.00633 * 187.58987 * 11 10 9 13 13 N 1.34786 * 119.99785 * 7.59133 * 11 10 9 14 14 C 1.46930 * 120.62727 * 7.61722 * 13 11 10 15 15 C 1.53626 * 108.54035 * 126.37133 * 14 13 11 16 16 C 1.53045 * 109.24262 * 54.85533 * 15 14 13 17 17 C 1.53045 * 109.53533 * 298.51241 * 16 15 14 18 18 H 1.09002 * 109.49312 * 301.40918 * 17 16 15 19 19 C 1.50705 * 109.52143 * 181.33456 * 17 16 15 20 20 H 1.08001 * 119.99955 * 0.14276 * 19 17 16 21 21 C 1.37878 * 119.99988 * 180.14374 * 19 17 16 22 22 N 1.31513 * 119.99835 * 0.02562 * 21 19 17 23 23 Si 1.86796 * 119.99943 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.46891 * 90.00306 * 23 21 19 25 25 H 1.48496 * 109.47159 * 209.99957 * 23 21 19 26 26 H 1.48493 * 109.47152 * 330.00445 * 23 21 19 27 27 C 1.46924 * 120.63044 * 187.90184 * 13 11 10 28 28 H 1.09003 * 109.47167 * 300.00732 * 1 2 3 29 29 H 1.09004 * 109.47285 * 59.99788 * 1 2 3 30 30 H 1.08996 * 109.47864 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47167 * 239.99268 * 2 1 3 32 32 H 1.09008 * 109.46951 * 119.99831 * 2 1 3 33 33 H 1.08993 * 109.47678 * 59.99559 * 3 2 1 34 34 H 1.09008 * 109.46947 * 299.99833 * 3 2 1 35 35 H 1.08002 * 120.77417 * 359.97438 * 6 5 4 36 36 H 1.08001 * 120.27543 * 180.26635 * 7 6 5 37 37 H 1.08000 * 119.46158 * 179.72145 * 8 7 6 38 38 H 1.08999 * 109.58260 * 246.20542 * 14 13 11 39 39 H 1.08994 * 109.58563 * 6.62878 * 14 13 11 40 40 H 1.09002 * 109.63269 * 294.86670 * 15 14 13 41 41 H 1.08994 * 109.42756 * 174.72543 * 15 14 13 42 42 H 1.08995 * 109.45942 * 178.49307 * 16 15 14 43 43 H 1.08997 * 109.45852 * 58.52815 * 16 15 14 44 44 H 0.97003 * 120.00046 * 179.97438 * 22 21 19 45 45 H 1.09001 * 109.58539 * 353.36789 * 27 13 11 46 46 H 1.08994 * 109.58737 * 113.65640 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4691 1.4424 -0.0006 5 6 4.0849 2.6510 -0.0012 6 6 3.3372 3.8267 -0.0071 7 6 4.0098 5.0351 -0.0019 8 6 5.3975 5.0434 -0.0020 9 7 6.0821 3.9222 -0.0020 10 6 5.4811 2.7374 -0.0022 11 6 6.2932 1.5021 -0.0027 12 8 5.7551 0.4210 -0.1420 13 7 7.6302 1.5745 0.1514 14 6 8.2771 2.8505 0.4862 15 6 9.1442 2.6450 1.7377 16 6 10.1196 1.4917 1.4917 17 6 9.3345 0.2036 1.2332 18 1 8.6957 -0.0111 2.0900 19 6 10.2953 -0.9383 1.0235 20 1 11.3600 -0.7641 1.0720 21 6 9.8150 -2.2056 0.7696 22 7 8.5184 -2.4176 0.7099 23 14 11.0059 -3.6209 0.5089 24 1 11.3032 -4.2643 1.8138 25 1 10.3966 -4.6181 -0.4073 26 1 12.2645 -3.1053 -0.0870 27 6 8.4691 0.3802 -0.0184 28 1 -0.3634 0.5140 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3635 -1.0276 0.0005 31 1 1.8933 -0.5140 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.6767 1.9564 0.8899 34 1 1.6767 1.9563 -0.8901 35 1 2.2576 3.7951 -0.0117 36 1 3.4597 5.9645 -0.0019 37 1 5.9231 5.9869 -0.0025 38 1 8.9027 3.1725 -0.3463 39 1 7.5160 3.6044 0.6870 40 1 8.5071 2.4072 2.5896 41 1 9.7039 3.5571 1.9447 42 1 10.7548 1.3602 2.3676 43 1 10.7396 1.7192 0.6245 44 1 8.1805 -3.3091 0.5309 45 1 7.8346 -0.4962 -0.1506 46 1 9.1082 0.5039 -0.8926 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597906619.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:32 Heat of formation + Delta-G solvation = -27.571341 kcal Electronic energy + Delta-G solvation = -27425.054272 eV Core-core repulsion = 23701.513058 eV Total energy + Delta-G solvation = -3723.541214 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.95196 -38.91267 -38.22335 -36.40924 -34.12062 -33.37974 -32.37992 -31.44023 -30.50670 -29.47945 -26.86097 -25.48578 -24.87461 -23.53850 -22.96458 -21.58576 -21.55523 -20.11839 -18.69558 -18.03024 -17.16729 -16.69614 -16.46556 -16.03023 -15.27609 -14.92688 -14.86364 -14.53026 -14.38280 -14.00713 -13.95571 -13.54275 -13.15025 -13.03808 -12.81573 -12.56316 -12.36579 -12.26008 -12.11001 -11.94437 -11.74910 -11.60163 -11.13911 -10.92583 -10.88277 -10.79835 -10.47374 -10.29374 -10.12356 -9.91127 -9.77374 -9.33893 -9.09921 -8.95737 -8.46880 -8.43380 -8.30968 -7.48098 -5.89098 -3.98042 0.71256 1.13444 3.00066 3.18689 3.36727 3.43713 3.46536 3.75222 4.08189 4.35218 4.46149 4.50698 4.62819 4.70762 4.73467 4.90622 5.00460 5.02175 5.18741 5.22861 5.40223 5.41746 5.45476 5.75537 5.79296 5.82404 5.84856 5.85652 5.93113 6.02844 6.10331 6.21308 6.41915 6.52074 6.71844 6.85293 6.91989 7.03614 7.14212 7.22540 7.32414 7.53130 7.72321 7.77479 8.01439 8.12537 8.45978 8.51478 9.02231 9.08357 9.66803 11.15743 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012592 B = 0.004159 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.049113 B = 6730.542241 C = 8735.010195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.125 4.125 3 C 0.052 3.948 4 O -0.266 6.266 5 C 0.137 3.863 6 C -0.177 4.177 7 C -0.116 4.116 8 C 0.045 3.955 9 N -0.409 5.409 10 C 0.058 3.942 11 C 0.554 3.446 12 O -0.512 6.512 13 N -0.586 5.586 14 C 0.073 3.927 15 C -0.134 4.134 16 C -0.111 4.111 17 C 0.041 3.959 18 H 0.028 0.972 19 C -0.520 4.520 20 H 0.057 0.943 21 C 0.062 3.938 22 N -0.879 5.879 23 Si 0.891 3.109 24 H -0.281 1.281 25 H -0.287 1.287 26 H -0.275 1.275 27 C 0.112 3.888 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.142 0.858 36 H 0.139 0.861 37 H 0.163 0.837 38 H 0.052 0.948 39 H 0.137 0.863 40 H 0.054 0.946 41 H 0.055 0.945 42 H 0.047 0.953 43 H 0.048 0.952 44 H 0.262 0.738 45 H 0.121 0.879 46 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.754 15.767 -1.557 21.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.162 4.162 3 C -0.024 4.024 4 O -0.176 6.176 5 C 0.086 3.914 6 C -0.204 4.204 7 C -0.136 4.136 8 C -0.114 4.114 9 N -0.121 5.121 10 C -0.080 4.080 11 C 0.339 3.661 12 O -0.387 6.387 13 N -0.317 5.317 14 C -0.051 4.051 15 C -0.172 4.172 16 C -0.149 4.149 17 C 0.022 3.978 18 H 0.046 0.954 19 C -0.558 4.558 20 H 0.075 0.925 21 C -0.140 4.140 22 N -0.517 5.517 23 Si 0.719 3.281 24 H -0.208 1.208 25 H -0.212 1.212 26 H -0.199 1.199 27 C -0.008 4.008 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.160 0.840 36 H 0.157 0.843 37 H 0.180 0.820 38 H 0.071 0.929 39 H 0.153 0.847 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.072 0.928 45 H 0.139 0.861 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -14.202 14.773 -1.682 20.561 hybrid contribution -0.358 -0.462 -0.118 0.596 sum -14.559 14.311 -1.800 20.494 Atomic orbital electron populations 1.21687 0.94448 1.02540 1.01786 1.21463 0.95466 0.94569 1.04713 1.23005 0.78942 0.99540 1.00912 1.86473 1.20488 1.24489 1.86123 1.20013 0.92328 0.85649 0.93444 1.21726 1.00863 0.91935 1.05864 1.22096 0.95728 0.98157 0.97599 1.22884 0.91518 0.96913 1.00037 1.67808 1.37259 0.97669 1.09336 1.21266 0.88877 0.93270 1.04633 1.17634 0.82517 0.86656 0.79290 1.90848 1.70880 1.27430 1.49551 1.48303 1.05243 1.11728 1.66446 1.22954 0.98482 0.87412 0.96208 1.22050 0.98463 0.98702 0.98005 1.21639 0.97361 0.95884 1.00010 1.18942 0.93745 0.91136 0.93954 0.95413 1.21104 0.92746 0.92439 1.49558 0.92451 1.25057 0.95057 0.98767 0.95167 1.69910 1.11461 1.21974 1.48324 0.86617 0.81211 0.82321 0.77982 1.20753 1.21241 1.19946 1.22281 0.93553 0.86315 0.98625 0.92574 0.92592 0.91663 0.90333 0.90315 0.92137 0.92150 0.83987 0.84331 0.81961 0.92922 0.84704 0.92742 0.92646 0.93431 0.93363 0.92757 0.86089 0.94039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.91 37.16 0.37 -0.76 16 2 C -0.12 -1.35 6.30 -26.74 -0.17 -1.52 16 3 C 0.05 0.58 4.76 37.16 0.18 0.75 16 4 O -0.27 -4.43 8.23 -40.43 -0.33 -4.76 16 5 C 0.14 2.12 6.70 -38.55 -0.26 1.87 16 6 C -0.18 -1.93 9.13 -39.15 -0.36 -2.28 16 7 C -0.12 -1.05 10.10 -39.36 -0.40 -1.45 16 8 C 0.05 0.49 11.17 -17.55 -0.20 0.29 16 9 N -0.41 -6.13 6.06 -9.71 -0.06 -6.19 16 10 C 0.06 1.05 6.62 -82.88 -0.55 0.50 16 11 C 0.55 12.57 7.65 -12.33 -0.09 12.48 16 12 O -0.51 -13.43 14.61 -16.50 -0.24 -13.67 16 13 N -0.59 -13.21 2.97 -173.62 -0.51 -13.72 16 14 C 0.07 1.35 5.94 -3.48 -0.02 1.33 16 15 C -0.13 -2.47 6.10 -26.38 -0.16 -2.63 16 16 C -0.11 -2.41 5.11 -26.68 -0.14 -2.55 16 17 C 0.04 1.09 2.25 -91.65 -0.21 0.88 16 18 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 19 C -0.52 -14.70 8.57 -34.44 -0.29 -15.00 16 20 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 21 C 0.06 1.78 5.30 -17.82 -0.09 1.69 16 22 N -0.88 -26.52 11.39 55.43 0.63 -25.89 16 23 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 26 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 27 C 0.11 2.92 5.41 -3.71 -0.02 2.90 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.08 0.95 8.14 -51.92 -0.42 0.53 16 33 H 0.06 0.56 7.71 -51.93 -0.40 0.16 16 34 H 0.06 0.55 7.68 -51.92 -0.40 0.15 16 35 H 0.14 1.11 6.46 -52.49 -0.34 0.77 16 36 H 0.14 0.74 8.06 -52.49 -0.42 0.31 16 37 H 0.16 1.16 8.06 -52.49 -0.42 0.74 16 38 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.14 2.27 3.93 -88.60 -0.35 1.93 16 40 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 45 H 0.12 3.61 5.11 -51.93 -0.27 3.34 16 46 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 365.91 15.07 5.51 5.51 Total: -1.00 -34.37 365.91 -9.65 -44.01 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -7.21 Total: 1.36 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: -2.41 Total: -3.51 kcal Atomic # 7 Polarization: -45.86 SS G_CDS: 0.06 Total: -45.80 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -0.57 Total: -18.43 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.37 -9.65 -44.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597906619.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.441 kcal (2) G-P(sol) polarization free energy of solvation -34.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds