Wall clock time and date at job start Tue Mar 31 2020 14:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47368 * 2 1 4 4 O 1.42905 * 109.47300 * 180.02562 * 3 2 1 5 5 C 1.35640 * 117.00070 * 179.97438 * 4 3 2 6 6 C 1.39342 * 120.54455 * 359.71942 * 5 4 3 7 7 C 1.38300 * 118.44103 * 179.73531 * 6 5 4 8 8 C 1.38769 * 119.44395 * 0.52202 * 7 6 5 9 9 N 1.31370 * 121.06897 * 359.74071 * 8 7 6 10 10 C 1.32851 * 121.69413 * 0.02562 * 9 8 7 11 11 C 1.47831 * 119.78560 * 179.97438 * 10 9 8 12 12 O 1.21555 * 120.00633 * 187.58987 * 11 10 9 13 13 N 1.34786 * 119.99785 * 7.59133 * 11 10 9 14 14 C 1.46930 * 120.62727 * 7.61722 * 13 11 10 15 15 C 1.53626 * 108.54035 * 126.37133 * 14 13 11 16 16 C 1.53045 * 109.24262 * 54.85533 * 15 14 13 17 17 C 1.53045 * 109.53533 * 298.51241 * 16 15 14 18 18 H 1.09002 * 109.49312 * 301.40918 * 17 16 15 19 19 C 1.50705 * 109.52143 * 181.33456 * 17 16 15 20 20 H 1.08001 * 119.99955 * 0.14276 * 19 17 16 21 21 C 1.37878 * 119.99988 * 180.14374 * 19 17 16 22 22 N 1.31513 * 119.99835 * 0.02562 * 21 19 17 23 23 Si 1.86796 * 119.99943 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.46891 * 90.00306 * 23 21 19 25 25 H 1.48496 * 109.47159 * 209.99957 * 23 21 19 26 26 H 1.48493 * 109.47152 * 330.00445 * 23 21 19 27 27 C 1.46924 * 120.63044 * 187.90184 * 13 11 10 28 28 H 1.09003 * 109.47167 * 300.00732 * 1 2 3 29 29 H 1.09004 * 109.47285 * 59.99788 * 1 2 3 30 30 H 1.08996 * 109.47864 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47167 * 239.99268 * 2 1 3 32 32 H 1.09008 * 109.46951 * 119.99831 * 2 1 3 33 33 H 1.08993 * 109.47678 * 59.99559 * 3 2 1 34 34 H 1.09008 * 109.46947 * 299.99833 * 3 2 1 35 35 H 1.08002 * 120.77417 * 359.97438 * 6 5 4 36 36 H 1.08001 * 120.27543 * 180.26635 * 7 6 5 37 37 H 1.08000 * 119.46158 * 179.72145 * 8 7 6 38 38 H 1.08999 * 109.58260 * 246.20542 * 14 13 11 39 39 H 1.08994 * 109.58563 * 6.62878 * 14 13 11 40 40 H 1.09002 * 109.63269 * 294.86670 * 15 14 13 41 41 H 1.08994 * 109.42756 * 174.72543 * 15 14 13 42 42 H 1.08995 * 109.45942 * 178.49307 * 16 15 14 43 43 H 1.08997 * 109.45852 * 58.52815 * 16 15 14 44 44 H 0.97003 * 120.00046 * 179.97438 * 22 21 19 45 45 H 1.09001 * 109.58539 * 353.36789 * 27 13 11 46 46 H 1.08994 * 109.58737 * 113.65640 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4691 1.4424 -0.0006 5 6 4.0849 2.6510 -0.0012 6 6 3.3372 3.8267 -0.0071 7 6 4.0098 5.0351 -0.0019 8 6 5.3975 5.0434 -0.0020 9 7 6.0821 3.9222 -0.0020 10 6 5.4811 2.7374 -0.0022 11 6 6.2932 1.5021 -0.0027 12 8 5.7551 0.4210 -0.1420 13 7 7.6302 1.5745 0.1514 14 6 8.2771 2.8505 0.4862 15 6 9.1442 2.6450 1.7377 16 6 10.1196 1.4917 1.4917 17 6 9.3345 0.2036 1.2332 18 1 8.6957 -0.0111 2.0900 19 6 10.2953 -0.9383 1.0235 20 1 11.3600 -0.7641 1.0720 21 6 9.8150 -2.2056 0.7696 22 7 8.5184 -2.4176 0.7099 23 14 11.0059 -3.6209 0.5089 24 1 11.3032 -4.2643 1.8138 25 1 10.3966 -4.6181 -0.4073 26 1 12.2645 -3.1053 -0.0870 27 6 8.4691 0.3802 -0.0184 28 1 -0.3634 0.5140 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3635 -1.0276 0.0005 31 1 1.8933 -0.5140 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.6767 1.9564 0.8899 34 1 1.6767 1.9563 -0.8901 35 1 2.2576 3.7951 -0.0117 36 1 3.4597 5.9645 -0.0019 37 1 5.9231 5.9869 -0.0025 38 1 8.9027 3.1725 -0.3463 39 1 7.5160 3.6044 0.6870 40 1 8.5071 2.4072 2.5896 41 1 9.7039 3.5571 1.9447 42 1 10.7548 1.3602 2.3676 43 1 10.7396 1.7192 0.6245 44 1 8.1805 -3.3091 0.5309 45 1 7.8346 -0.4962 -0.1506 46 1 9.1082 0.5039 -0.8926 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597906619.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:31 Heat of formation + Delta-G solvation = -49.050349 kcal Electronic energy + Delta-G solvation = -27425.985671 eV Core-core repulsion = 23701.513058 eV Total energy + Delta-G solvation = -3724.472614 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.07562 -40.42329 -39.34425 -38.20893 -35.33441 -34.91602 -33.75815 -33.02273 -31.63121 -31.29634 -27.69105 -27.21222 -26.66075 -24.80332 -24.05070 -23.32354 -22.49258 -21.66978 -20.33718 -19.08791 -18.70235 -18.18619 -17.71105 -17.41627 -16.80013 -16.46869 -16.16050 -16.08206 -15.50112 -15.31527 -15.16343 -14.88434 -14.59262 -14.48221 -14.36134 -14.09679 -13.80290 -13.58789 -13.40008 -13.05894 -12.95125 -12.88025 -12.64542 -12.52518 -12.26569 -12.24219 -11.98457 -11.84658 -11.65654 -11.65021 -11.13661 -11.01978 -10.94492 -10.78953 -10.53824 -9.81488 -9.58167 -9.23582 -8.10259 -6.29316 -0.32365 0.23447 1.38617 1.40349 1.51584 1.87189 2.06250 2.22508 2.41925 2.83171 3.15224 3.23064 3.57803 3.70456 3.88392 3.95391 4.05029 4.08300 4.23111 4.23519 4.26768 4.40881 4.44850 4.50379 4.51149 4.63935 4.74523 4.81547 4.88193 4.94747 5.03359 5.07498 5.11206 5.13199 5.15348 5.26595 5.29083 5.34405 5.38296 5.54024 5.59719 5.78118 5.91293 5.98445 6.29155 6.33663 6.64454 6.82467 6.84888 7.35619 7.41368 8.93021 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012592 B = 0.004159 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.049113 B = 6730.542241 C = 8735.010195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.045 3.955 4 O -0.313 6.313 5 C 0.121 3.879 6 C -0.167 4.167 7 C -0.084 4.084 8 C 0.052 3.948 9 N -0.428 5.428 10 C 0.009 3.991 11 C 0.542 3.458 12 O -0.571 6.571 13 N -0.595 5.595 14 C 0.071 3.929 15 C -0.126 4.126 16 C -0.105 4.105 17 C 0.041 3.959 18 H -0.019 1.019 19 C -0.538 4.538 20 H 0.063 0.937 21 C 0.007 3.993 22 N -0.916 5.916 23 Si 0.963 3.037 24 H -0.273 1.273 25 H -0.286 1.286 26 H -0.260 1.260 27 C 0.125 3.875 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.179 0.821 36 H 0.196 0.804 37 H 0.208 0.792 38 H 0.062 0.938 39 H 0.163 0.837 40 H 0.040 0.960 41 H 0.101 0.899 42 H 0.051 0.949 43 H 0.055 0.945 44 H 0.259 0.741 45 H 0.075 0.925 46 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.813 20.328 -1.610 25.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C -0.029 4.029 4 O -0.224 6.224 5 C 0.070 3.930 6 C -0.194 4.194 7 C -0.103 4.103 8 C -0.109 4.109 9 N -0.140 5.140 10 C -0.125 4.125 11 C 0.330 3.670 12 O -0.450 6.450 13 N -0.326 5.326 14 C -0.051 4.051 15 C -0.164 4.164 16 C -0.143 4.143 17 C 0.022 3.978 18 H -0.001 1.001 19 C -0.576 4.576 20 H 0.082 0.918 21 C -0.192 4.192 22 N -0.555 5.555 23 Si 0.787 3.213 24 H -0.199 1.199 25 H -0.212 1.212 26 H -0.184 1.184 27 C 0.003 3.997 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.196 0.804 36 H 0.213 0.787 37 H 0.224 0.776 38 H 0.081 0.919 39 H 0.178 0.822 40 H 0.059 0.941 41 H 0.119 0.881 42 H 0.070 0.930 43 H 0.074 0.926 44 H 0.068 0.932 45 H 0.094 0.906 46 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -15.240 19.356 -1.723 24.696 hybrid contribution -0.156 -1.708 -0.111 1.719 sum -15.395 17.648 -1.834 23.491 Atomic orbital electron populations 1.21638 0.91365 1.03187 1.03294 1.21512 0.98038 0.94682 1.02370 1.23302 0.76700 0.99715 1.03178 1.86432 1.23249 1.26256 1.86482 1.20245 0.91853 0.86930 0.93935 1.22182 1.02480 0.90581 1.04108 1.22749 0.95209 0.99428 0.92911 1.23735 0.92933 0.96659 0.97561 1.67402 1.38432 0.97780 1.10414 1.20397 0.89368 0.92200 1.10582 1.18515 0.82591 0.88209 0.77647 1.90786 1.71965 1.30273 1.51998 1.48364 1.05537 1.11876 1.66815 1.23318 0.99259 0.86063 0.96427 1.22026 0.97803 0.99106 0.97486 1.21537 0.97603 0.94726 1.00429 1.18865 0.93354 0.93479 0.92107 1.00111 1.21528 0.93324 0.93505 1.49278 0.91843 1.25975 0.96658 1.01804 0.94764 1.70135 1.13738 1.22247 1.49378 0.85487 0.79106 0.78579 0.78092 1.19897 1.21231 1.18447 1.21706 0.93009 0.86869 0.98124 0.91045 0.90948 0.91555 0.92660 0.92844 0.89686 0.89578 0.80365 0.78735 0.77571 0.91933 0.82167 0.94124 0.88065 0.93014 0.92587 0.93166 0.90646 0.94832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.91 71.98 0.71 -1.25 16 2 C -0.13 -2.97 6.30 30.59 0.19 -2.77 16 3 C 0.05 0.99 4.76 71.98 0.34 1.33 16 4 O -0.31 -10.98 8.23 -68.68 -0.57 -11.54 16 5 C 0.12 3.74 6.70 22.94 0.15 3.89 16 6 C -0.17 -2.93 9.13 22.55 0.21 -2.73 16 7 C -0.08 -0.98 10.10 22.41 0.23 -0.75 16 8 C 0.05 0.85 11.17 84.89 0.95 1.80 16 9 N -0.43 -12.02 6.06 -184.63 -1.12 -13.14 16 10 C 0.01 0.34 6.62 41.93 0.28 0.62 16 11 C 0.54 26.64 7.65 86.78 0.66 27.30 16 12 O -0.57 -33.34 14.61 16.97 0.25 -33.09 16 13 N -0.60 -28.62 2.97 -821.48 -2.44 -31.05 16 14 C 0.07 2.61 5.94 86.51 0.51 3.13 16 15 C -0.13 -4.57 6.10 30.82 0.19 -4.39 16 16 C -0.11 -4.63 5.11 30.62 0.16 -4.48 16 17 C 0.04 2.31 2.25 -11.46 -0.03 2.28 16 18 H -0.02 -1.24 8.14 -2.39 -0.02 -1.26 16 19 C -0.54 -31.82 8.57 25.60 0.22 -31.60 16 20 H 0.06 3.58 7.74 -2.91 -0.02 3.56 16 21 C 0.01 0.42 5.30 84.66 0.45 0.87 16 22 N -0.92 -59.34 11.39 21.45 0.24 -59.09 16 23 Si 0.96 46.54 29.54 68.60 2.03 48.57 16 24 H -0.27 -12.79 7.11 99.48 0.71 -12.09 16 25 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 26 H -0.26 -11.90 7.11 99.48 0.71 -11.20 16 27 C 0.13 7.06 5.41 86.36 0.47 7.52 16 28 H 0.07 0.81 8.14 -2.39 -0.02 0.80 16 29 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 30 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 33 H 0.09 1.39 7.71 -2.39 -0.02 1.37 16 34 H 0.09 1.39 7.68 -2.38 -0.02 1.37 16 35 H 0.18 1.76 6.46 -2.91 -0.02 1.74 16 36 H 0.20 0.26 8.06 -2.91 -0.02 0.24 16 37 H 0.21 1.50 8.06 -2.91 -0.02 1.48 16 38 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.16 5.20 3.93 -74.79 -0.29 4.91 16 40 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.10 2.78 8.14 -2.39 -0.02 2.76 16 42 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 44 H 0.26 16.09 8.31 -92.71 -0.77 15.32 16 45 H 0.08 4.97 5.11 -2.39 -0.01 4.96 16 46 H 0.03 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -87.77 365.91 4.77 -82.99 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: 0.69 Total: 15.58 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: 5.69 Total: 0.78 kcal Atomic # 7 Polarization: -99.98 SS G_CDS: -3.31 Total: -103.29 kcal Atomic # 8 Polarization: -44.32 SS G_CDS: -0.32 Total: -44.63 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Total: -87.77 4.77 -82.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597906619.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.941 kcal (2) G-P(sol) polarization free energy of solvation -87.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds