Wall clock time and date at job start Tue Mar 31 2020 14:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46921 * 2 1 4 4 O 1.42901 * 109.47261 * 120.00107 * 2 1 3 5 5 C 1.35925 * 116.99598 * 146.86033 * 4 2 1 6 6 C 1.38851 * 120.40048 * 185.51473 * 5 4 2 7 7 N 1.31879 * 120.99778 * 179.97438 * 6 5 4 8 8 C 1.31688 * 121.94008 * 359.70135 * 7 6 5 9 9 C 1.39515 * 120.69038 * 0.59139 * 8 7 6 10 10 C 1.47858 * 120.53130 * 179.70037 * 9 8 7 11 11 O 1.21556 * 119.99994 * 45.39899 * 10 9 8 12 12 N 1.34775 * 120.00163 * 225.39955 * 10 9 8 13 13 C 1.46921 * 120.62885 * 355.66765 * 12 10 9 14 14 C 1.53194 * 108.77759 * 126.39329 * 13 12 10 15 15 C 1.53038 * 109.31415 * 54.63066 * 14 13 12 16 16 C 1.53042 * 109.53647 * 298.63909 * 15 14 13 17 17 H 1.08997 * 109.49976 * 301.37805 * 16 15 14 18 18 C 1.50706 * 109.49594 * 181.31572 * 16 15 14 19 19 H 1.08004 * 119.99900 * 0.06806 * 18 16 15 20 20 C 1.37876 * 120.00109 * 180.33929 * 18 16 15 21 21 N 1.31518 * 119.99855 * 359.72811 * 20 18 16 22 22 Si 1.86793 * 120.00037 * 179.72430 * 20 18 16 23 23 H 1.48505 * 109.47136 * 90.00064 * 22 20 18 24 24 H 1.48502 * 109.47333 * 210.00001 * 22 20 18 25 25 H 1.48495 * 109.47409 * 330.00027 * 22 20 18 26 26 C 1.46930 * 120.60410 * 175.64422 * 12 10 9 27 27 C 1.38841 * 120.40932 * 5.49964 * 5 4 2 28 28 H 1.09002 * 109.47321 * 299.99880 * 1 2 3 29 29 H 1.09005 * 109.47569 * 59.99822 * 1 2 3 30 30 H 1.09004 * 109.47168 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46798 * 240.00631 * 2 1 3 32 32 H 1.08993 * 109.47108 * 60.00118 * 3 2 1 33 33 H 1.09001 * 109.47404 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.47469 * 299.99760 * 3 2 1 35 35 H 1.08004 * 119.50308 * 359.96199 * 6 5 4 36 36 H 1.08003 * 119.65202 * 180.31372 * 8 7 6 37 37 H 1.08996 * 109.59101 * 6.60065 * 13 12 10 38 38 H 1.09006 * 109.58919 * 246.17574 * 13 12 10 39 39 H 1.09006 * 109.49276 * 294.67748 * 14 13 12 40 40 H 1.09003 * 109.50108 * 174.58819 * 14 13 12 41 41 H 1.08999 * 109.45840 * 178.61777 * 15 14 13 42 42 H 1.08996 * 109.44936 * 58.65164 * 15 14 13 43 43 H 0.97000 * 120.00103 * 180.02562 * 21 20 18 44 44 H 1.08999 * 109.56232 * 113.81014 * 26 12 10 45 45 H 1.09000 * 109.61731 * 353.38303 * 26 12 10 46 46 H 1.08000 * 120.87968 * 359.97438 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 3.1682 -1.3689 1.0467 6 6 3.6363 -2.1423 2.1006 7 7 4.7617 -2.8219 1.9967 8 6 5.4867 -2.8054 0.8974 9 6 5.0903 -2.0488 -0.2056 10 6 5.9103 -2.0276 -1.4358 11 8 6.3502 -3.0653 -1.8909 12 7 6.1701 -0.8577 -2.0525 13 6 5.5683 0.3927 -1.5697 14 6 6.6832 1.4152 -1.3278 15 6 7.5144 1.5692 -2.6035 16 6 8.1585 0.2274 -2.9597 17 1 8.7852 -0.1063 -2.1328 18 6 9.0027 0.3876 -4.1978 19 1 9.0739 1.3505 -4.6819 20 6 9.6795 -0.6961 -4.7157 21 7 9.5928 -1.8686 -4.1262 22 14 10.7197 -0.4992 -6.2547 23 1 12.1064 -0.1313 -5.8712 24 1 10.7374 -1.7792 -7.0074 25 1 10.1424 0.5694 -7.1091 26 6 7.0609 -0.8091 -3.2199 27 6 3.9011 -1.3146 -0.1313 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.6766 1.9563 0.8899 33 1 3.1299 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 3.0704 -2.1878 3.0193 36 1 6.3999 -3.3801 0.8510 37 1 5.0354 0.2058 -0.6375 38 1 4.8756 0.7778 -2.3181 39 1 7.3233 1.0701 -0.5158 40 1 6.2437 2.3766 -1.0616 41 1 8.2932 2.3143 -2.4417 42 1 6.8687 1.8904 -3.4208 43 1 10.0693 -2.6310 -4.4904 44 1 6.4898 -0.5226 -4.1031 45 1 7.5128 -1.7886 -3.3764 46 1 3.5620 -0.7223 -0.9683 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597907755.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:37 Heat of formation + Delta-G solvation = -38.846366 kcal Electronic energy + Delta-G solvation = -27623.987343 eV Core-core repulsion = 23899.957207 eV Total energy + Delta-G solvation = -3724.030136 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.10790 -39.46603 -38.41858 -36.73629 -33.77842 -33.62723 -32.44845 -31.65025 -30.24802 -29.76528 -27.65847 -25.64938 -25.22551 -24.23026 -23.32124 -21.96866 -21.27683 -20.32548 -19.02249 -17.79619 -17.26317 -16.91504 -16.49934 -16.01524 -15.81597 -15.30591 -14.70934 -14.66112 -14.37316 -14.16458 -13.79074 -13.60306 -13.52726 -13.16875 -12.91846 -12.76954 -12.68306 -12.61658 -12.36128 -12.24300 -12.06379 -11.93527 -11.35154 -11.13975 -11.01798 -10.95034 -10.57922 -10.51525 -10.29516 -10.07904 -9.97544 -9.69157 -9.33817 -9.18139 -8.92556 -8.55756 -8.47835 -7.87002 -6.04408 -4.13361 0.74778 1.09491 2.79033 3.08538 3.28013 3.35891 3.37764 3.48527 3.77861 4.30919 4.37030 4.40065 4.47750 4.52171 4.61727 4.70932 4.85136 5.02136 5.18928 5.20415 5.24953 5.26339 5.36572 5.38589 5.39850 5.52019 5.56821 5.66912 5.80431 5.81181 5.86966 5.90676 6.08329 6.22715 6.28784 6.52493 6.58287 6.76833 6.89685 7.00438 7.06027 7.15553 7.56529 7.79049 7.81735 7.92894 8.11529 8.32133 8.67131 8.90736 9.52700 11.01090 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018376 B = 0.003627 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.336722 B = 7717.055711 C = 8559.980452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.070 3.930 3 C -0.178 4.178 4 O -0.302 6.302 5 C 0.075 3.925 6 C 0.084 3.916 7 N -0.447 5.447 8 C 0.108 3.892 9 C -0.123 4.123 10 C 0.549 3.451 11 O -0.523 6.523 12 N -0.594 5.594 13 C 0.094 3.906 14 C -0.134 4.134 15 C -0.110 4.110 16 C 0.040 3.960 17 H 0.030 0.970 18 C -0.522 4.522 19 H 0.059 0.941 20 C 0.063 3.937 21 N -0.881 5.881 22 Si 0.893 3.107 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.274 1.274 26 C 0.112 3.888 27 C -0.145 4.145 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.165 0.835 36 H 0.168 0.832 37 H 0.079 0.921 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.053 0.947 42 H 0.050 0.950 43 H 0.264 0.736 44 H 0.045 0.955 45 H 0.125 0.875 46 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.313 5.589 9.778 20.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.014 3.986 3 C -0.235 4.235 4 O -0.215 6.215 5 C 0.028 3.972 6 C -0.075 4.075 7 N -0.155 5.155 8 C -0.049 4.049 9 C -0.128 4.128 10 C 0.335 3.665 11 O -0.400 6.400 12 N -0.326 5.326 13 C -0.030 4.030 14 C -0.172 4.172 15 C -0.148 4.148 16 C 0.021 3.979 17 H 0.048 0.952 18 C -0.560 4.560 19 H 0.077 0.923 20 C -0.140 4.140 21 N -0.518 5.518 22 Si 0.721 3.279 23 H -0.206 1.206 24 H -0.211 1.211 25 H -0.199 1.199 26 C -0.007 4.007 27 C -0.171 4.171 28 H 0.087 0.913 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.182 0.818 36 H 0.185 0.815 37 H 0.097 0.903 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.063 0.937 45 H 0.143 0.857 46 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -16.852 4.385 10.350 20.257 hybrid contribution 0.344 0.781 -1.809 2.000 sum -16.508 5.166 8.541 19.291 Atomic orbital electron populations 1.21891 0.92350 1.03236 1.03203 1.22575 0.95621 0.93000 0.87435 1.22343 1.02324 0.95431 1.03431 1.86149 1.35581 1.62689 1.37098 1.20015 0.87504 0.94423 0.95305 1.22350 0.93593 0.93700 0.97861 1.67795 1.04594 1.17976 1.25146 1.22820 0.99349 0.95790 0.86965 1.21104 0.96075 0.98464 0.97152 1.18056 0.80850 0.84529 0.83110 1.90830 1.51973 1.31716 1.65508 1.48461 1.47071 1.05368 1.31732 1.22084 0.96099 0.85633 0.99157 1.21951 0.97641 0.97435 1.00167 1.21630 0.98050 1.00470 0.94666 1.18977 0.92419 0.89135 0.97397 0.95213 1.21063 1.28376 0.95702 1.10907 0.92312 1.25054 0.96367 0.95339 0.97241 1.69870 1.42036 1.00187 1.39693 0.86577 0.80691 0.77521 0.83126 1.20648 1.21141 1.19913 1.22387 0.89379 1.06335 0.82624 1.21977 0.95571 1.01168 0.98406 0.91329 0.90389 0.91645 0.90643 0.91198 0.91735 0.90610 0.81810 0.81482 0.90348 0.91892 0.92042 0.92186 0.92871 0.93153 0.92554 0.93703 0.85749 0.83378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.56 37.16 0.36 -0.59 16 2 C 0.07 0.57 2.82 -26.73 -0.08 0.50 16 3 C -0.18 -1.29 9.48 37.16 0.35 -0.93 16 4 O -0.30 -3.14 9.79 -19.50 -0.19 -3.33 16 5 C 0.08 0.89 6.69 -39.13 -0.26 0.63 16 6 C 0.08 1.02 11.13 -17.30 -0.19 0.83 16 7 N -0.45 -6.38 10.34 -12.80 -0.13 -6.51 16 8 C 0.11 1.68 10.86 -17.14 -0.19 1.49 16 9 C -0.12 -1.96 5.20 -104.84 -0.54 -2.51 16 10 C 0.55 11.00 7.32 -12.32 -0.09 10.91 16 11 O -0.52 -12.66 16.43 5.32 0.09 -12.57 16 12 N -0.59 -11.62 2.97 -173.88 -0.52 -12.13 16 13 C 0.09 1.41 5.25 -3.71 -0.02 1.39 16 14 C -0.13 -2.10 6.08 -26.61 -0.16 -2.26 16 15 C -0.11 -2.12 5.11 -26.69 -0.14 -2.26 16 16 C 0.04 0.96 2.25 -91.65 -0.21 0.75 16 17 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 18 C -0.52 -13.84 8.57 -34.44 -0.30 -14.13 16 19 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 20 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 21 N -0.88 -25.26 11.39 55.43 0.63 -24.63 16 22 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 26 C 0.11 2.65 5.39 -3.71 -0.02 2.63 16 27 C -0.14 -1.88 6.17 -38.72 -0.24 -2.12 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.64 5.82 -51.93 -0.30 0.33 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.52 7.84 -51.93 -0.41 0.12 16 34 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.16 1.54 8.06 -52.48 -0.42 1.12 16 36 H 0.17 2.57 8.06 -52.48 -0.42 2.14 16 37 H 0.08 1.03 4.04 -51.93 -0.21 0.82 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 43 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 44 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.12 3.45 5.14 -51.93 -0.27 3.18 16 46 H 0.15 1.71 4.57 -52.49 -0.24 1.47 16 LS Contribution 366.23 15.07 5.52 5.52 Total: -1.00 -31.06 366.23 -8.33 -39.39 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -6.89 Total: 2.39 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: -1.82 Total: -4.05 kcal Atomic # 7 Polarization: -43.25 SS G_CDS: -0.02 Total: -43.27 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: -0.10 Total: -15.90 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.06 -8.33 -39.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597907755.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.542 kcal (2) G-P(sol) polarization free energy of solvation -31.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds