Wall clock time and date at job start Tue Mar 31 2020 14:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46921 * 2 1 4 4 O 1.42901 * 109.47261 * 120.00107 * 2 1 3 5 5 C 1.35925 * 116.99598 * 146.86033 * 4 2 1 6 6 C 1.38851 * 120.40048 * 185.51473 * 5 4 2 7 7 N 1.31879 * 120.99778 * 179.97438 * 6 5 4 8 8 C 1.31688 * 121.94008 * 359.70135 * 7 6 5 9 9 C 1.39515 * 120.69038 * 0.59139 * 8 7 6 10 10 C 1.47858 * 120.53130 * 179.70037 * 9 8 7 11 11 O 1.21556 * 119.99994 * 45.39899 * 10 9 8 12 12 N 1.34775 * 120.00163 * 225.39955 * 10 9 8 13 13 C 1.46921 * 120.62885 * 355.66765 * 12 10 9 14 14 C 1.53194 * 108.77759 * 126.39329 * 13 12 10 15 15 C 1.53038 * 109.31415 * 54.63066 * 14 13 12 16 16 C 1.53042 * 109.53647 * 298.63909 * 15 14 13 17 17 H 1.08997 * 109.49976 * 301.37805 * 16 15 14 18 18 C 1.50706 * 109.49594 * 181.31572 * 16 15 14 19 19 H 1.08004 * 119.99900 * 0.06806 * 18 16 15 20 20 C 1.37876 * 120.00109 * 180.33929 * 18 16 15 21 21 N 1.31518 * 119.99855 * 359.72811 * 20 18 16 22 22 Si 1.86793 * 120.00037 * 179.72430 * 20 18 16 23 23 H 1.48505 * 109.47136 * 90.00064 * 22 20 18 24 24 H 1.48502 * 109.47333 * 210.00001 * 22 20 18 25 25 H 1.48495 * 109.47409 * 330.00027 * 22 20 18 26 26 C 1.46930 * 120.60410 * 175.64422 * 12 10 9 27 27 C 1.38841 * 120.40932 * 5.49964 * 5 4 2 28 28 H 1.09002 * 109.47321 * 299.99880 * 1 2 3 29 29 H 1.09005 * 109.47569 * 59.99822 * 1 2 3 30 30 H 1.09004 * 109.47168 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46798 * 240.00631 * 2 1 3 32 32 H 1.08993 * 109.47108 * 60.00118 * 3 2 1 33 33 H 1.09001 * 109.47404 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.47469 * 299.99760 * 3 2 1 35 35 H 1.08004 * 119.50308 * 359.96199 * 6 5 4 36 36 H 1.08003 * 119.65202 * 180.31372 * 8 7 6 37 37 H 1.08996 * 109.59101 * 6.60065 * 13 12 10 38 38 H 1.09006 * 109.58919 * 246.17574 * 13 12 10 39 39 H 1.09006 * 109.49276 * 294.67748 * 14 13 12 40 40 H 1.09003 * 109.50108 * 174.58819 * 14 13 12 41 41 H 1.08999 * 109.45840 * 178.61777 * 15 14 13 42 42 H 1.08996 * 109.44936 * 58.65164 * 15 14 13 43 43 H 0.97000 * 120.00103 * 180.02562 * 21 20 18 44 44 H 1.08999 * 109.56232 * 113.81014 * 26 12 10 45 45 H 1.09000 * 109.61731 * 353.38303 * 26 12 10 46 46 H 1.08000 * 120.87968 * 359.97438 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 3.1682 -1.3689 1.0467 6 6 3.6363 -2.1423 2.1006 7 7 4.7617 -2.8219 1.9967 8 6 5.4867 -2.8054 0.8974 9 6 5.0903 -2.0488 -0.2056 10 6 5.9103 -2.0276 -1.4358 11 8 6.3502 -3.0653 -1.8909 12 7 6.1701 -0.8577 -2.0525 13 6 5.5683 0.3927 -1.5697 14 6 6.6832 1.4152 -1.3278 15 6 7.5144 1.5692 -2.6035 16 6 8.1585 0.2274 -2.9597 17 1 8.7852 -0.1063 -2.1328 18 6 9.0027 0.3876 -4.1978 19 1 9.0739 1.3505 -4.6819 20 6 9.6795 -0.6961 -4.7157 21 7 9.5928 -1.8686 -4.1262 22 14 10.7197 -0.4992 -6.2547 23 1 12.1064 -0.1313 -5.8712 24 1 10.7374 -1.7792 -7.0074 25 1 10.1424 0.5694 -7.1091 26 6 7.0609 -0.8091 -3.2199 27 6 3.9011 -1.3146 -0.1313 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.6766 1.9563 0.8899 33 1 3.1299 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 3.0704 -2.1878 3.0193 36 1 6.3999 -3.3801 0.8510 37 1 5.0354 0.2058 -0.6375 38 1 4.8756 0.7778 -2.3181 39 1 7.3233 1.0701 -0.5158 40 1 6.2437 2.3766 -1.0616 41 1 8.2932 2.3143 -2.4417 42 1 6.8687 1.8904 -3.4208 43 1 10.0693 -2.6310 -4.4904 44 1 6.4898 -0.5226 -4.1031 45 1 7.5128 -1.7886 -3.3764 46 1 3.5620 -0.7223 -0.9683 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597907755.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:36 Heat of formation + Delta-G solvation = -57.926029 kcal Electronic energy + Delta-G solvation = -27624.814699 eV Core-core repulsion = 23899.957207 eV Total energy + Delta-G solvation = -3724.857492 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.22181 -40.79626 -39.46162 -38.36139 -35.51487 -34.30533 -33.98847 -33.10698 -31.47914 -31.25408 -28.15634 -27.29475 -26.86586 -25.30396 -24.61793 -23.51278 -22.11529 -21.72779 -20.46018 -19.09161 -18.47192 -18.23791 -17.91318 -17.44021 -16.99298 -16.62873 -16.36994 -15.93646 -15.42749 -15.36501 -15.08801 -14.91667 -14.58452 -14.54656 -14.36870 -14.12463 -13.83626 -13.57056 -13.43423 -13.28408 -13.06740 -12.89903 -12.80898 -12.74619 -12.31106 -12.27193 -12.02407 -11.86205 -11.71465 -11.66695 -11.45184 -11.08335 -11.00277 -10.81847 -10.55522 -10.44348 -9.60636 -9.46648 -8.12348 -6.29373 -0.38333 0.03645 1.40336 1.41716 1.52247 1.58322 2.00082 2.03452 2.41573 2.60904 3.14903 3.20596 3.40587 3.52089 3.67914 3.80867 3.92803 3.97187 4.01864 4.09217 4.16490 4.26149 4.36087 4.50358 4.67429 4.71531 4.73019 4.76025 4.77187 4.79198 4.85482 4.89703 4.92166 5.04593 5.19336 5.21860 5.26024 5.28521 5.32323 5.33276 5.48703 5.58441 5.86488 5.96245 6.15732 6.29985 6.48429 6.74643 6.83104 7.10753 7.41215 8.91276 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018376 B = 0.003627 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.336722 B = 7717.055711 C = 8559.980452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.059 3.941 3 C -0.178 4.178 4 O -0.300 6.300 5 C 0.091 3.909 6 C 0.092 3.908 7 N -0.456 5.456 8 C 0.095 3.905 9 C -0.136 4.136 10 C 0.545 3.455 11 O -0.580 6.580 12 N -0.596 5.596 13 C 0.090 3.910 14 C -0.127 4.127 15 C -0.104 4.104 16 C 0.038 3.962 17 H -0.014 1.014 18 C -0.535 4.535 19 H 0.064 0.936 20 C 0.010 3.990 21 N -0.916 5.916 22 Si 0.958 3.042 23 H -0.277 1.277 24 H -0.289 1.289 25 H -0.260 1.260 26 C 0.125 3.875 27 C -0.137 4.137 28 H 0.072 0.928 29 H 0.095 0.905 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.057 0.943 34 H 0.093 0.907 35 H 0.197 0.803 36 H 0.154 0.846 37 H 0.103 0.897 38 H 0.092 0.908 39 H 0.046 0.954 40 H 0.106 0.894 41 H 0.053 0.947 42 H 0.062 0.938 43 H 0.260 0.740 44 H 0.044 0.956 45 H 0.078 0.922 46 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.134 8.373 10.470 24.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.004 3.996 3 C -0.235 4.235 4 O -0.212 6.212 5 C 0.042 3.958 6 C -0.068 4.068 7 N -0.164 5.164 8 C -0.062 4.062 9 C -0.142 4.142 10 C 0.333 3.667 11 O -0.461 6.461 12 N -0.327 5.327 13 C -0.031 4.031 14 C -0.165 4.165 15 C -0.142 4.142 16 C 0.018 3.982 17 H 0.004 0.996 18 C -0.573 4.573 19 H 0.082 0.918 20 C -0.189 4.189 21 N -0.554 5.554 22 Si 0.783 3.217 23 H -0.202 1.202 24 H -0.214 1.214 25 H -0.184 1.184 26 C 0.004 3.996 27 C -0.164 4.164 28 H 0.091 0.909 29 H 0.114 0.886 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.112 0.888 35 H 0.214 0.786 36 H 0.171 0.829 37 H 0.121 0.879 38 H 0.110 0.890 39 H 0.065 0.935 40 H 0.125 0.875 41 H 0.072 0.928 42 H 0.081 0.919 43 H 0.069 0.931 44 H 0.062 0.938 45 H 0.096 0.904 46 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -19.695 7.228 11.054 23.713 hybrid contribution 1.099 -0.033 -1.942 2.232 sum -18.596 7.195 9.112 21.923 Atomic orbital electron populations 1.21918 0.90832 1.03364 1.04342 1.22899 0.96848 0.93440 0.86458 1.22366 1.01903 0.94661 1.04565 1.86185 1.34376 1.62285 1.38392 1.19954 0.87661 0.93757 0.94411 1.22919 0.92628 0.92193 0.99016 1.67835 1.05474 1.18769 1.24353 1.22663 0.99645 0.96206 0.87652 1.20666 0.97195 1.00950 0.95359 1.18674 0.80460 0.83741 0.83854 1.90787 1.54433 1.33717 1.67201 1.48447 1.46349 1.07166 1.30687 1.22446 0.96299 0.83305 1.01095 1.21924 0.97160 0.99819 0.97603 1.21513 0.98560 0.97129 0.96986 1.18917 0.92152 0.92078 0.95014 0.99616 1.21507 1.28480 0.95733 1.11607 0.91771 1.25893 0.97751 0.95011 1.00283 1.70076 1.43106 1.00921 1.41347 0.85557 0.79060 0.77510 0.79563 1.20232 1.21448 1.18450 1.21812 0.89884 1.03623 0.84315 1.22046 0.94246 1.00574 0.99489 0.90883 0.88597 0.92060 0.90747 0.90835 0.92360 0.88839 0.78603 0.82865 0.87889 0.89003 0.93538 0.87528 0.92818 0.91938 0.93110 0.93773 0.90405 0.81644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.56 71.98 0.69 -0.64 16 2 C 0.06 0.74 2.82 30.59 0.09 0.83 16 3 C -0.18 -1.80 9.48 71.98 0.68 -1.12 16 4 O -0.30 -5.11 9.79 -92.70 -0.91 -6.01 16 5 C 0.09 1.88 6.69 22.56 0.15 2.03 16 6 C 0.09 1.99 11.13 84.83 0.94 2.93 16 7 N -0.46 -12.57 10.34 -194.39 -2.01 -14.58 16 8 C 0.09 3.01 10.86 85.02 0.92 3.94 16 9 C -0.14 -4.38 5.20 -20.01 -0.10 -4.48 16 10 C 0.54 22.78 7.32 86.79 0.64 23.42 16 11 O -0.58 -30.25 16.43 -3.89 -0.06 -30.32 16 12 N -0.60 -23.67 2.97 -822.29 -2.44 -26.12 16 13 C 0.09 2.49 5.25 86.36 0.45 2.95 16 14 C -0.13 -3.66 6.08 30.67 0.19 -3.48 16 15 C -0.10 -3.88 5.11 30.62 0.16 -3.72 16 16 C 0.04 1.87 2.25 -11.46 -0.03 1.84 16 17 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 18 C -0.53 -29.00 8.57 25.60 0.22 -28.78 16 19 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 20 C 0.01 0.56 5.30 84.65 0.45 1.01 16 21 N -0.92 -55.47 11.39 21.45 0.24 -55.23 16 22 Si 0.96 43.89 29.54 68.60 2.03 45.92 16 23 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 24 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 25 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 26 C 0.13 6.16 5.39 86.36 0.47 6.63 16 27 C -0.14 -3.27 6.17 22.83 0.14 -3.13 16 28 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.10 0.54 8.14 -2.38 -0.02 0.52 16 30 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.07 0.98 5.82 -2.38 -0.01 0.96 16 32 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.06 0.68 7.84 -2.39 -0.02 0.66 16 34 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.20 2.91 8.06 -2.91 -0.02 2.88 16 36 H 0.15 5.13 8.06 -2.91 -0.02 5.11 16 37 H 0.10 2.39 4.04 -2.39 -0.01 2.38 16 38 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 39 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 40 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.06 2.17 8.14 -2.39 -0.02 2.16 16 43 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 44 H 0.04 2.12 8.14 -2.39 -0.02 2.10 16 45 H 0.08 4.62 5.14 -2.39 -0.01 4.61 16 46 H 0.17 3.30 4.57 -2.91 -0.01 3.29 16 Total: -1.00 -73.10 366.23 3.88 -69.23 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: 0.98 Total: 16.89 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: 6.05 Total: 0.23 kcal Atomic # 7 Polarization: -91.72 SS G_CDS: -4.21 Total: -95.93 kcal Atomic # 8 Polarization: -35.36 SS G_CDS: -0.97 Total: -36.33 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -73.10 3.88 -69.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597907755.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.302 kcal (2) G-P(sol) polarization free energy of solvation -73.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds