Wall clock time and date at job start Tue Mar 31 2020 14:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46604 * 2 1 4 4 O 1.42903 * 109.47069 * 119.99372 * 2 1 3 5 5 C 1.35924 * 116.99854 * 154.90877 * 4 2 1 6 6 C 1.38845 * 120.40359 * 185.32031 * 5 4 2 7 7 N 1.31883 * 120.99715 * 180.02562 * 6 5 4 8 8 C 1.31685 * 121.94409 * 0.02562 * 7 6 5 9 9 C 1.39526 * 120.68721 * 359.97438 * 8 7 6 10 10 C 1.47855 * 120.52946 * 180.02562 * 9 8 7 11 11 O 1.21554 * 120.00128 * 319.61155 * 10 9 8 12 12 N 1.34772 * 119.99899 * 139.60798 * 10 9 8 13 13 C 1.46921 * 120.63573 * 354.46355 * 12 10 9 14 14 C 1.53195 * 108.77755 * 233.58367 * 13 12 10 15 15 C 1.53038 * 109.30927 * 305.36209 * 14 13 12 16 16 C 1.53035 * 109.54199 * 61.36610 * 15 14 13 17 17 H 1.09006 * 109.49742 * 58.61171 * 16 15 14 18 18 C 1.50700 * 109.50203 * 178.68268 * 16 15 14 19 19 H 1.08000 * 119.99733 * 359.97438 * 18 16 15 20 20 C 1.37878 * 120.00071 * 180.02562 * 18 16 15 21 21 N 1.31514 * 119.99842 * 359.97438 * 20 18 16 22 22 Si 1.86797 * 119.99517 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47412 * 60.00013 * 22 20 18 24 24 H 1.48507 * 109.46732 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47532 * 299.99629 * 22 20 18 26 26 C 1.46938 * 120.62872 * 174.17610 * 12 10 9 27 27 C 1.38845 * 120.40366 * 5.33973 * 5 4 2 28 28 H 1.08995 * 109.47303 * 300.00017 * 1 2 3 29 29 H 1.09004 * 109.47035 * 60.00620 * 1 2 3 30 30 H 1.08998 * 109.46768 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47303 * 239.99983 * 2 1 3 32 32 H 1.08995 * 109.47305 * 59.99984 * 3 2 1 33 33 H 1.09002 * 109.46707 * 179.97438 * 3 2 1 34 34 H 1.09004 * 109.46918 * 299.99451 * 3 2 1 35 35 H 1.07995 * 119.50454 * 0.04120 * 6 5 4 36 36 H 1.08001 * 119.65737 * 180.02562 * 8 7 6 37 37 H 1.09007 * 109.58353 * 353.37163 * 13 12 10 38 38 H 1.08999 * 109.59114 * 113.64897 * 13 12 10 39 39 H 1.08994 * 109.49587 * 65.31238 * 14 13 12 40 40 H 1.08998 * 109.49612 * 185.40829 * 14 13 12 41 41 H 1.09000 * 109.45830 * 181.38489 * 15 14 13 42 42 H 1.08999 * 109.45845 * 301.35597 * 15 14 13 43 43 H 0.96998 * 119.99127 * 180.02562 * 21 20 18 44 44 H 1.08992 * 109.58506 * 246.20486 * 26 12 10 45 45 H 1.09003 * 109.58256 * 6.63718 * 26 12 10 46 46 H 1.07999 * 120.88222 * 0.25771 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0063 -0.6735 1.1669 5 6 3.2461 -1.2264 1.0974 6 6 3.7346 -1.9908 2.1485 7 7 4.9359 -2.5322 2.0937 8 6 5.7236 -2.3758 1.0501 9 6 5.3089 -1.6223 -0.0486 10 6 6.1960 -1.4494 -1.2187 11 8 7.3866 -1.2654 -1.0569 12 7 5.6846 -1.4960 -2.4648 13 6 4.2722 -1.8372 -2.6820 14 6 4.1929 -2.9974 -3.6793 15 6 4.9520 -2.6219 -4.9539 16 6 6.4243 -2.3731 -4.6184 17 1 6.8514 -3.2695 -4.1687 18 6 7.1774 -2.0349 -5.8792 19 1 6.6583 -2.0012 -6.8257 20 6 8.5293 -1.7697 -5.8246 21 7 9.1615 -1.8114 -4.6721 22 14 9.4628 -1.3513 -7.3875 23 1 8.8819 -0.1291 -7.9990 24 1 10.8913 -1.1099 -7.0612 25 1 9.3575 -2.4817 -8.3448 26 6 6.5274 -1.2003 -3.6315 27 6 4.0396 -1.0333 -0.0255 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.6765 1.9564 0.8899 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9564 -0.8901 35 1 3.1215 -2.1445 3.0242 36 1 6.7006 -2.8363 1.0441 37 1 3.8189 -2.1362 -1.7368 38 1 3.7445 -0.9717 -3.0826 39 1 4.6409 -3.8877 -3.2380 40 1 3.1494 -3.1973 -3.9227 41 1 4.8764 -3.4360 -5.6748 42 1 4.5192 -1.7173 -5.3811 43 1 10.1125 -1.6244 -4.6337 44 1 6.1805 -0.2847 -4.1102 45 1 7.5628 -1.0790 -3.3129 46 1 3.6887 -0.4401 -0.8570 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597907756.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:40 Heat of formation + Delta-G solvation = -41.611133 kcal Electronic energy + Delta-G solvation = -27596.423930 eV Core-core repulsion = 23872.273905 eV Total energy + Delta-G solvation = -3724.150025 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.10071 -39.46692 -38.41786 -36.71977 -33.75808 -33.61230 -32.44576 -31.63256 -30.26704 -29.75238 -27.66472 -25.62691 -25.21622 -24.18282 -23.30944 -21.94861 -21.31120 -20.29841 -19.04186 -17.72492 -17.27903 -16.93221 -16.47457 -16.09723 -15.67754 -15.37728 -14.80781 -14.58800 -14.26017 -14.21700 -13.90215 -13.58622 -13.37031 -13.15717 -12.93386 -12.78844 -12.68330 -12.60590 -12.41553 -12.17053 -12.09555 -11.92016 -11.34163 -11.12602 -11.06004 -10.97755 -10.59496 -10.54025 -10.29721 -10.06749 -9.96323 -9.68662 -9.33379 -9.17223 -8.93566 -8.56545 -8.47929 -7.86014 -6.03090 -4.12444 0.72679 1.09939 2.78687 3.11523 3.29245 3.35923 3.36782 3.49543 3.78123 4.33007 4.38045 4.40422 4.49028 4.50875 4.63959 4.71542 4.83470 5.01047 5.19075 5.20008 5.24827 5.27227 5.35848 5.38412 5.40112 5.52221 5.55977 5.67268 5.80290 5.81480 5.86411 5.90760 6.07889 6.22565 6.28527 6.52245 6.58095 6.76511 6.90027 6.99926 7.06167 7.16082 7.56731 7.79168 7.81676 7.93453 8.11737 8.33033 8.68062 8.91356 9.53481 11.02192 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.017536 B = 0.003643 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.301132 B = 7684.886929 C = 8473.437416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.073 3.927 3 C -0.183 4.183 4 O -0.303 6.303 5 C 0.074 3.926 6 C 0.085 3.915 7 N -0.448 5.448 8 C 0.109 3.891 9 C -0.126 4.126 10 C 0.549 3.451 11 O -0.521 6.521 12 N -0.596 5.596 13 C 0.099 3.901 14 C -0.134 4.134 15 C -0.111 4.111 16 C 0.041 3.959 17 H 0.031 0.969 18 C -0.524 4.524 19 H 0.058 0.942 20 C 0.064 3.936 21 N -0.879 5.879 22 Si 0.893 3.107 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 C 0.112 3.888 27 C -0.141 4.141 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.165 0.835 36 H 0.168 0.832 37 H 0.074 0.926 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.053 0.947 42 H 0.050 0.950 43 H 0.265 0.735 44 H 0.045 0.955 45 H 0.124 0.876 46 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.781 3.006 9.889 20.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.017 3.983 3 C -0.240 4.240 4 O -0.216 6.216 5 C 0.027 3.973 6 C -0.074 4.074 7 N -0.157 5.157 8 C -0.048 4.048 9 C -0.131 4.131 10 C 0.334 3.666 11 O -0.398 6.398 12 N -0.328 5.328 13 C -0.024 4.024 14 C -0.172 4.172 15 C -0.148 4.148 16 C 0.022 3.978 17 H 0.049 0.951 18 C -0.562 4.562 19 H 0.076 0.924 20 C -0.140 4.140 21 N -0.516 5.516 22 Si 0.720 3.280 23 H -0.203 1.203 24 H -0.212 1.212 25 H -0.203 1.203 26 C -0.007 4.007 27 C -0.167 4.167 28 H 0.086 0.914 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.182 0.818 36 H 0.185 0.815 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.075 0.925 44 H 0.063 0.937 45 H 0.142 0.858 46 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -16.793 2.657 10.888 20.190 hybrid contribution 0.227 0.870 -1.856 2.062 sum -16.566 3.526 9.032 19.195 Atomic orbital electron populations 1.21848 0.92020 1.03331 1.03225 1.22531 0.95747 0.92794 0.87235 1.22408 1.02338 0.95802 1.03460 1.86140 1.28450 1.68069 1.38946 1.20009 0.86089 0.95777 0.95454 1.22354 0.92914 0.94668 0.97477 1.67798 1.03455 1.18958 1.25440 1.22846 0.99331 0.95391 0.87271 1.21124 0.94565 0.99910 0.97488 1.18069 0.87353 0.78488 0.82694 1.90837 1.14784 1.48928 1.85220 1.48448 1.10925 1.66733 1.06723 1.21960 0.83027 0.97972 0.99452 1.21949 0.99952 0.97762 0.97517 1.21632 0.98250 1.00129 0.94810 1.19038 0.89926 0.94468 0.94405 0.95130 1.21027 0.93282 1.48821 0.93085 0.92396 1.25053 0.97736 0.95075 0.96101 1.69876 1.09964 1.47922 1.23884 0.86649 0.78905 0.78886 0.83512 1.20264 1.21219 1.20263 1.22469 0.96967 0.98183 0.83130 1.22030 0.93898 1.02176 0.98641 0.91380 0.90281 0.91485 0.90759 0.91219 0.91826 0.90607 0.81821 0.81455 0.90805 0.92077 0.91990 0.92153 0.92870 0.93169 0.92515 0.93691 0.85788 0.83451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.56 37.16 0.36 -0.55 16 2 C 0.07 0.60 2.85 -26.73 -0.08 0.53 16 3 C -0.18 -1.44 9.19 37.16 0.34 -1.10 16 4 O -0.30 -3.16 9.81 -19.50 -0.19 -3.35 16 5 C 0.07 0.88 6.62 -39.13 -0.26 0.62 16 6 C 0.08 1.02 11.13 -17.30 -0.19 0.83 16 7 N -0.45 -6.34 10.34 -12.80 -0.13 -6.47 16 8 C 0.11 1.67 10.81 -17.13 -0.19 1.49 16 9 C -0.13 -2.00 5.13 -104.84 -0.54 -2.54 16 10 C 0.55 10.96 7.34 -12.33 -0.09 10.87 16 11 O -0.52 -12.63 16.36 5.32 0.09 -12.54 16 12 N -0.60 -11.60 2.97 -173.60 -0.51 -12.12 16 13 C 0.10 1.49 4.93 -3.71 -0.02 1.48 16 14 C -0.13 -2.09 6.08 -26.61 -0.16 -2.26 16 15 C -0.11 -2.12 5.10 -26.69 -0.14 -2.26 16 16 C 0.04 0.98 2.26 -91.43 -0.21 0.78 16 17 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 18 C -0.52 -13.89 8.56 -34.44 -0.29 -14.18 16 19 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 20 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 21 N -0.88 -25.28 11.41 55.43 0.63 -24.65 16 22 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 C 0.11 2.63 5.44 -3.48 -0.02 2.61 16 27 C -0.14 -1.83 5.67 -38.72 -0.22 -2.05 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.60 6.33 -51.93 -0.33 0.28 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.60 6.95 -51.93 -0.36 0.24 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.16 1.53 8.06 -52.49 -0.42 1.10 16 36 H 0.17 2.54 8.06 -52.49 -0.42 2.12 16 37 H 0.07 0.98 4.73 -51.93 -0.25 0.73 16 38 H 0.06 0.81 8.13 -51.93 -0.42 0.39 16 39 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.04 1.04 8.14 -51.93 -0.42 0.61 16 45 H 0.12 3.43 5.14 -51.93 -0.27 3.16 16 46 H 0.15 1.73 4.21 -52.49 -0.22 1.51 16 LS Contribution 364.95 15.07 5.50 5.50 Total: -1.00 -31.07 364.95 -8.32 -39.38 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -6.88 Total: 2.41 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: -1.79 Total: -4.09 kcal Atomic # 7 Polarization: -43.23 SS G_CDS: -0.01 Total: -43.24 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: -0.10 Total: -15.89 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.07 -8.32 -39.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597907756.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.227 kcal (2) G-P(sol) polarization free energy of solvation -31.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds