Wall clock time and date at job start Tue Mar 31 2020 14:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46604 * 2 1 4 4 O 1.42903 * 109.47069 * 119.99372 * 2 1 3 5 5 C 1.35924 * 116.99854 * 154.90877 * 4 2 1 6 6 C 1.38845 * 120.40359 * 185.32031 * 5 4 2 7 7 N 1.31883 * 120.99715 * 180.02562 * 6 5 4 8 8 C 1.31685 * 121.94409 * 0.02562 * 7 6 5 9 9 C 1.39526 * 120.68721 * 359.97438 * 8 7 6 10 10 C 1.47855 * 120.52946 * 180.02562 * 9 8 7 11 11 O 1.21554 * 120.00128 * 319.61155 * 10 9 8 12 12 N 1.34772 * 119.99899 * 139.60798 * 10 9 8 13 13 C 1.46921 * 120.63573 * 354.46355 * 12 10 9 14 14 C 1.53195 * 108.77755 * 233.58367 * 13 12 10 15 15 C 1.53038 * 109.30927 * 305.36209 * 14 13 12 16 16 C 1.53035 * 109.54199 * 61.36610 * 15 14 13 17 17 H 1.09006 * 109.49742 * 58.61171 * 16 15 14 18 18 C 1.50700 * 109.50203 * 178.68268 * 16 15 14 19 19 H 1.08000 * 119.99733 * 359.97438 * 18 16 15 20 20 C 1.37878 * 120.00071 * 180.02562 * 18 16 15 21 21 N 1.31514 * 119.99842 * 359.97438 * 20 18 16 22 22 Si 1.86797 * 119.99517 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47412 * 60.00013 * 22 20 18 24 24 H 1.48507 * 109.46732 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47532 * 299.99629 * 22 20 18 26 26 C 1.46938 * 120.62872 * 174.17610 * 12 10 9 27 27 C 1.38845 * 120.40366 * 5.33973 * 5 4 2 28 28 H 1.08995 * 109.47303 * 300.00017 * 1 2 3 29 29 H 1.09004 * 109.47035 * 60.00620 * 1 2 3 30 30 H 1.08998 * 109.46768 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47303 * 239.99983 * 2 1 3 32 32 H 1.08995 * 109.47305 * 59.99984 * 3 2 1 33 33 H 1.09002 * 109.46707 * 179.97438 * 3 2 1 34 34 H 1.09004 * 109.46918 * 299.99451 * 3 2 1 35 35 H 1.07995 * 119.50454 * 0.04120 * 6 5 4 36 36 H 1.08001 * 119.65737 * 180.02562 * 8 7 6 37 37 H 1.09007 * 109.58353 * 353.37163 * 13 12 10 38 38 H 1.08999 * 109.59114 * 113.64897 * 13 12 10 39 39 H 1.08994 * 109.49587 * 65.31238 * 14 13 12 40 40 H 1.08998 * 109.49612 * 185.40829 * 14 13 12 41 41 H 1.09000 * 109.45830 * 181.38489 * 15 14 13 42 42 H 1.08999 * 109.45845 * 301.35597 * 15 14 13 43 43 H 0.96998 * 119.99127 * 180.02562 * 21 20 18 44 44 H 1.08992 * 109.58506 * 246.20486 * 26 12 10 45 45 H 1.09003 * 109.58256 * 6.63718 * 26 12 10 46 46 H 1.07999 * 120.88222 * 0.25771 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0063 -0.6735 1.1669 5 6 3.2461 -1.2264 1.0974 6 6 3.7346 -1.9908 2.1485 7 7 4.9359 -2.5322 2.0937 8 6 5.7236 -2.3758 1.0501 9 6 5.3089 -1.6223 -0.0486 10 6 6.1960 -1.4494 -1.2187 11 8 7.3866 -1.2654 -1.0569 12 7 5.6846 -1.4960 -2.4648 13 6 4.2722 -1.8372 -2.6820 14 6 4.1929 -2.9974 -3.6793 15 6 4.9520 -2.6219 -4.9539 16 6 6.4243 -2.3731 -4.6184 17 1 6.8514 -3.2695 -4.1687 18 6 7.1774 -2.0349 -5.8792 19 1 6.6583 -2.0012 -6.8257 20 6 8.5293 -1.7697 -5.8246 21 7 9.1615 -1.8114 -4.6721 22 14 9.4628 -1.3513 -7.3875 23 1 8.8819 -0.1291 -7.9990 24 1 10.8913 -1.1099 -7.0612 25 1 9.3575 -2.4817 -8.3448 26 6 6.5274 -1.2003 -3.6315 27 6 4.0396 -1.0333 -0.0255 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.6765 1.9564 0.8899 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9564 -0.8901 35 1 3.1215 -2.1445 3.0242 36 1 6.7006 -2.8363 1.0441 37 1 3.8189 -2.1362 -1.7368 38 1 3.7445 -0.9717 -3.0826 39 1 4.6409 -3.8877 -3.2380 40 1 3.1494 -3.1973 -3.9227 41 1 4.8764 -3.4360 -5.6748 42 1 4.5192 -1.7173 -5.3811 43 1 10.1125 -1.6244 -4.6337 44 1 6.1805 -0.2847 -4.1102 45 1 7.5628 -1.0790 -3.3129 46 1 3.6887 -0.4401 -0.8570 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597907756.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:39 Heat of formation + Delta-G solvation = -60.801101 kcal Electronic energy + Delta-G solvation = -27597.256069 eV Core-core repulsion = 23872.273905 eV Total energy + Delta-G solvation = -3724.982165 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.20765 -40.79393 -39.46148 -38.34046 -35.49828 -34.30159 -33.98609 -33.07445 -31.48156 -31.25658 -28.19232 -27.27433 -26.85786 -25.25157 -24.59511 -23.50445 -22.11869 -21.72563 -20.47629 -19.01855 -18.46691 -18.22048 -17.92013 -17.45399 -16.92720 -16.63146 -16.44433 -15.94892 -15.39254 -15.27194 -15.15701 -14.96471 -14.58524 -14.54103 -14.33725 -14.02396 -13.89003 -13.57157 -13.42910 -13.30570 -13.08585 -12.87221 -12.84978 -12.72649 -12.30964 -12.28778 -12.02809 -11.91143 -11.74267 -11.66958 -11.43401 -11.06813 -10.99287 -10.81971 -10.55200 -10.46286 -9.59517 -9.46541 -8.11195 -6.28670 -0.40301 0.04650 1.41483 1.42340 1.51004 1.62697 2.00273 2.04592 2.42017 2.61169 3.15952 3.21548 3.41901 3.54865 3.70373 3.80465 3.90410 3.96082 3.99596 4.09704 4.15143 4.27304 4.35677 4.50416 4.67697 4.69154 4.71728 4.73654 4.77395 4.79874 4.83901 4.87119 4.93249 5.04810 5.19826 5.22451 5.23373 5.26680 5.31956 5.33412 5.49727 5.59019 5.87166 5.96641 6.15638 6.30658 6.49247 6.74912 6.83930 7.12251 7.41892 8.92059 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.017536 B = 0.003643 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.301132 B = 7684.886929 C = 8473.437416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.063 3.937 3 C -0.183 4.183 4 O -0.301 6.301 5 C 0.089 3.911 6 C 0.094 3.906 7 N -0.457 5.457 8 C 0.097 3.903 9 C -0.139 4.139 10 C 0.544 3.456 11 O -0.580 6.580 12 N -0.597 5.597 13 C 0.095 3.905 14 C -0.127 4.127 15 C -0.104 4.104 16 C 0.038 3.962 17 H -0.016 1.016 18 C -0.537 4.537 19 H 0.064 0.936 20 C 0.010 3.990 21 N -0.915 5.915 22 Si 0.957 3.043 23 H -0.265 1.265 24 H -0.291 1.291 25 H -0.269 1.269 26 C 0.125 3.875 27 C -0.132 4.132 28 H 0.069 0.931 29 H 0.097 0.903 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.045 0.955 34 H 0.093 0.907 35 H 0.197 0.803 36 H 0.155 0.845 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.045 0.955 40 H 0.107 0.893 41 H 0.052 0.948 42 H 0.063 0.937 43 H 0.260 0.740 44 H 0.047 0.953 45 H 0.077 0.923 46 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.864 3.654 9.708 24.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.008 3.992 3 C -0.240 4.240 4 O -0.213 6.213 5 C 0.040 3.960 6 C -0.066 4.066 7 N -0.166 5.166 8 C -0.059 4.059 9 C -0.144 4.144 10 C 0.332 3.668 11 O -0.461 6.461 12 N -0.328 5.328 13 C -0.026 4.026 14 C -0.165 4.165 15 C -0.142 4.142 16 C 0.019 3.981 17 H 0.003 0.997 18 C -0.575 4.575 19 H 0.082 0.918 20 C -0.189 4.189 21 N -0.554 5.554 22 Si 0.782 3.218 23 H -0.190 1.190 24 H -0.217 1.217 25 H -0.194 1.194 26 C 0.003 3.997 27 C -0.159 4.159 28 H 0.088 0.912 29 H 0.115 0.885 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.064 0.936 34 H 0.111 0.889 35 H 0.214 0.786 36 H 0.173 0.827 37 H 0.116 0.884 38 H 0.110 0.890 39 H 0.064 0.936 40 H 0.126 0.874 41 H 0.071 0.929 42 H 0.082 0.918 43 H 0.069 0.931 44 H 0.065 0.935 45 H 0.095 0.905 46 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -20.938 3.295 10.687 23.738 hybrid contribution 1.365 0.684 -1.737 2.312 sum -19.574 3.979 8.950 21.888 Atomic orbital electron populations 1.21872 0.90146 1.03799 1.04248 1.22857 0.97168 0.92658 0.86566 1.22425 1.01146 0.95929 1.04531 1.86179 1.27156 1.67757 1.40242 1.19956 0.86500 0.94946 0.94563 1.22923 0.92169 0.93132 0.98368 1.67843 1.04329 1.19659 1.24721 1.22699 0.99432 0.96005 0.87780 1.20676 0.95379 1.02377 0.96008 1.18694 0.87179 0.77120 0.83792 1.90795 1.17578 1.51536 1.86150 1.48432 1.12534 1.66285 1.05557 1.22326 0.80391 0.99078 1.00847 1.21927 1.01904 0.97180 0.95516 1.21513 0.95026 1.00805 0.96831 1.18983 0.93129 0.92582 0.93445 0.99738 1.21484 0.93801 1.47952 0.94256 0.91778 1.25894 0.98929 0.95135 0.98945 1.70088 1.09749 1.49368 1.26156 0.85624 0.77196 0.79120 0.79817 1.19020 1.21654 1.19402 1.21896 0.95474 0.97962 0.84352 1.22077 0.92560 1.01545 0.99713 0.91228 0.88455 0.91292 0.90110 0.90981 0.93620 0.88862 0.78600 0.82744 0.88382 0.88970 0.93588 0.87434 0.92879 0.91827 0.93145 0.93500 0.90483 0.81935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.56 71.98 0.69 -0.49 16 2 C 0.06 0.79 2.85 30.60 0.09 0.88 16 3 C -0.18 -2.30 9.19 71.98 0.66 -1.64 16 4 O -0.30 -5.13 9.81 -92.69 -0.91 -6.04 16 5 C 0.09 1.84 6.62 22.56 0.15 1.99 16 6 C 0.09 2.00 11.13 84.83 0.94 2.94 16 7 N -0.46 -12.44 10.34 -194.40 -2.01 -14.45 16 8 C 0.10 3.06 10.81 85.03 0.92 3.98 16 9 C -0.14 -4.44 5.13 -20.01 -0.10 -4.54 16 10 C 0.54 22.73 7.34 86.79 0.64 23.36 16 11 O -0.58 -30.36 16.36 -3.88 -0.06 -30.43 16 12 N -0.60 -23.61 2.97 -821.43 -2.44 -26.05 16 13 C 0.10 2.62 4.93 86.36 0.43 3.04 16 14 C -0.13 -3.66 6.08 30.67 0.19 -3.47 16 15 C -0.10 -3.86 5.10 30.62 0.16 -3.71 16 16 C 0.04 1.88 2.26 -11.32 -0.03 1.86 16 17 H -0.02 -0.91 8.14 -2.38 -0.02 -0.93 16 18 C -0.54 -29.09 8.56 25.60 0.22 -28.87 16 19 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 20 C 0.01 0.59 5.30 84.66 0.45 1.04 16 21 N -0.92 -55.62 11.41 21.45 0.24 -55.37 16 22 Si 0.96 43.86 29.54 68.60 2.03 45.89 16 23 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 24 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 25 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 26 C 0.12 6.11 5.44 86.51 0.47 6.58 16 27 C -0.13 -3.16 5.67 22.83 0.13 -3.03 16 28 H 0.07 0.56 8.14 -2.39 -0.02 0.55 16 29 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.08 0.94 6.33 -2.39 -0.02 0.92 16 32 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.04 0.75 6.95 -2.39 -0.02 0.73 16 34 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.20 2.86 8.06 -2.91 -0.02 2.84 16 36 H 0.16 5.09 8.06 -2.91 -0.02 5.07 16 37 H 0.10 2.27 4.73 -2.38 -0.01 2.26 16 38 H 0.09 2.03 8.13 -2.39 -0.02 2.01 16 39 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 44 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 45 H 0.08 4.57 5.14 -2.39 -0.01 4.55 16 46 H 0.16 3.32 4.21 -2.91 -0.01 3.31 16 Total: -1.00 -73.41 364.95 3.83 -69.58 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: 0.98 Total: 16.97 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: 6.00 Total: -0.09 kcal Atomic # 7 Polarization: -91.68 SS G_CDS: -4.20 Total: -95.88 kcal Atomic # 8 Polarization: -35.50 SS G_CDS: -0.97 Total: -36.47 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -73.41 3.83 -69.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597907756.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.780 kcal (2) G-P(sol) polarization free energy of solvation -73.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds