Wall clock time and date at job start Tue Mar 31 2020 14:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47466 * 2 1 4 4 O 1.42897 * 109.47082 * 120.00250 * 2 1 3 5 5 C 1.35685 * 116.99859 * 149.99490 * 4 2 1 6 6 C 1.38899 * 119.62234 * 179.97438 * 5 4 2 7 7 C 1.39571 * 118.94761 * 179.97438 * 6 5 4 8 8 C 1.48161 * 120.89312 * 180.02562 * 7 6 5 9 9 O 1.21518 * 119.99555 * 40.85673 * 8 7 6 10 10 N 1.34769 * 120.00195 * 220.85732 * 8 7 6 11 11 C 1.46931 * 120.63184 * 5.90482 * 10 8 7 12 12 C 1.53194 * 108.77386 * 126.36831 * 11 10 8 13 13 C 1.53034 * 109.30993 * 54.63959 * 12 11 10 14 14 C 1.53039 * 109.53962 * 298.63009 * 13 12 11 15 15 H 1.09006 * 109.49974 * 301.41555 * 14 13 12 16 16 C 1.50696 * 109.49971 * 181.35347 * 14 13 12 17 17 H 1.08004 * 120.00331 * 359.97438 * 16 14 13 18 18 C 1.37879 * 120.00147 * 180.02562 * 16 14 13 19 19 N 1.31516 * 120.00119 * 359.97438 * 18 16 14 20 20 Si 1.86799 * 120.00159 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47647 * 89.99663 * 20 18 16 22 22 H 1.48501 * 109.47358 * 210.00076 * 20 18 16 23 23 H 1.48506 * 109.46859 * 329.99535 * 20 18 16 24 24 C 1.46924 * 120.63356 * 185.62835 * 10 8 7 25 25 C 1.39967 * 118.21662 * 0.02562 * 7 6 5 26 26 C 1.37983 * 119.13213 * 0.02562 * 25 7 6 27 27 N 1.31905 * 120.97933 * 359.97438 * 26 25 7 28 28 H 1.09007 * 109.47168 * 299.99885 * 1 2 3 29 29 H 1.09004 * 109.47470 * 59.99416 * 1 2 3 30 30 H 1.09000 * 109.47793 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46449 * 239.99955 * 2 1 3 32 32 H 1.08998 * 109.46655 * 59.99972 * 3 2 1 33 33 H 1.08999 * 109.47010 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.46889 * 300.00315 * 3 2 1 35 35 H 1.08000 * 120.52512 * 359.97438 * 6 5 4 36 36 H 1.08998 * 109.58625 * 246.15704 * 11 10 8 37 37 H 1.09003 * 109.58531 * 6.58353 * 11 10 8 38 38 H 1.08996 * 109.49354 * 174.59086 * 12 11 10 39 39 H 1.09002 * 109.49738 * 294.68703 * 12 11 10 40 40 H 1.08997 * 109.46750 * 58.65770 * 13 12 11 41 41 H 1.09003 * 109.45841 * 178.61470 * 13 12 11 42 42 H 0.96999 * 120.00295 * 180.02562 * 19 18 16 43 43 H 1.09005 * 109.58557 * 353.41636 * 24 10 8 44 44 H 1.08997 * 109.59199 * 113.84267 * 24 10 8 45 45 H 1.08001 * 120.43637 * 179.97438 * 25 7 6 46 46 H 1.08005 * 119.50776 * 180.02562 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 3.1987 -1.3131 1.0651 6 6 3.7134 -1.9852 2.1664 7 6 4.9408 -2.6386 2.0460 8 6 5.5294 -3.3690 3.1928 9 8 4.8194 -4.0426 3.9132 10 7 6.8522 -3.2863 3.4372 11 6 7.7022 -2.3767 2.6568 12 6 8.4773 -1.4755 3.6232 13 6 9.2409 -2.3455 4.6242 14 6 8.2495 -3.1832 5.4350 15 1 7.5541 -2.5231 5.9536 16 6 9.0000 -4.0149 6.4430 17 1 10.0767 -3.9529 6.4998 18 6 8.3121 -4.8557 7.2921 19 7 7.0010 -4.9317 7.2226 20 14 9.2424 -5.8861 8.5420 21 1 9.3784 -5.1238 9.8091 22 1 8.4972 -7.1446 8.7991 23 1 10.5913 -6.2092 8.0115 24 6 7.4708 -4.0996 4.4929 25 6 5.6007 -2.5854 0.8128 26 6 5.0197 -1.8945 -0.2307 27 7 3.8577 -1.2885 -0.0803 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3635 -1.0276 -0.0005 31 1 1.8932 -0.5139 -0.8901 32 1 1.6767 1.9562 0.8900 33 1 3.1301 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 3.1723 -2.0018 3.1009 36 1 8.4030 -2.9566 2.0562 37 1 7.0795 -1.7636 2.0053 38 1 9.1823 -0.8621 3.0623 39 1 7.7798 -0.8315 4.1588 40 1 9.9204 -3.0068 4.0865 41 1 9.8129 -1.7073 5.2977 42 1 6.5171 -5.5229 7.8202 43 1 6.6955 -4.6229 5.0526 44 1 8.1523 -4.8228 4.0451 45 1 6.5526 -3.0780 0.6800 46 1 5.5234 -1.8499 -1.1851 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597908432.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:36 Heat of formation + Delta-G solvation = -41.027912 kcal Electronic energy + Delta-G solvation = -26952.577752 eV Core-core repulsion = 23228.453017 eV Total energy + Delta-G solvation = -3724.124735 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.94113 -39.52647 -38.07984 -36.74757 -33.72386 -33.40400 -32.50677 -31.72411 -30.32129 -29.68792 -27.50801 -25.82981 -25.11320 -23.71245 -23.43739 -21.86090 -21.62595 -20.07607 -18.98809 -17.91655 -17.17876 -16.34802 -16.09903 -15.84420 -15.78316 -15.26828 -14.78957 -14.60399 -14.40079 -14.03695 -13.97626 -13.72133 -13.38777 -13.15999 -12.80140 -12.63683 -12.57130 -12.54743 -12.31447 -12.13235 -11.96280 -11.86868 -11.17390 -11.07562 -10.99406 -10.88428 -10.53125 -10.46178 -10.26942 -10.00265 -9.93127 -9.82074 -9.34708 -9.14865 -8.95149 -8.54753 -8.45854 -7.84328 -6.01696 -4.10992 0.85948 1.07621 2.77872 3.16944 3.29540 3.37258 3.39198 3.55414 3.79964 4.14147 4.41033 4.60869 4.65539 4.74613 4.87768 4.96104 5.00424 5.07575 5.27517 5.29010 5.30468 5.44940 5.47727 5.51745 5.58207 5.61142 5.66394 5.70503 5.87264 5.93785 5.94789 6.09429 6.13363 6.26652 6.27473 6.56843 6.62237 6.80846 6.93613 7.07367 7.16404 7.19344 7.60033 7.70776 7.83238 7.95141 8.13864 8.34926 8.68618 8.93335 9.54970 11.03512 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.023358 B = 0.002932 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.437979 B = 9548.647019 C =10098.359814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.081 3.919 3 C -0.168 4.168 4 O -0.300 6.300 5 C 0.322 3.678 6 C -0.143 4.143 7 C -0.034 4.034 8 C 0.545 3.455 9 O -0.520 6.520 10 N -0.594 5.594 11 C 0.099 3.901 12 C -0.134 4.134 13 C -0.111 4.111 14 C 0.039 3.961 15 H 0.029 0.971 16 C -0.521 4.521 17 H 0.059 0.941 18 C 0.062 3.938 19 N -0.880 5.880 20 Si 0.893 3.107 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.274 1.274 24 C 0.112 3.888 25 C -0.186 4.186 26 C 0.134 3.866 27 N -0.534 5.534 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.089 0.911 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.149 0.851 36 H 0.065 0.935 37 H 0.079 0.921 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.050 0.950 41 H 0.052 0.948 42 H 0.264 0.736 43 H 0.124 0.876 44 H 0.046 0.954 45 H 0.145 0.855 46 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.186 10.159 -17.779 21.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.025 3.975 3 C -0.226 4.226 4 O -0.208 6.208 5 C 0.143 3.857 6 C -0.164 4.164 7 C -0.045 4.045 8 C 0.331 3.669 9 O -0.396 6.396 10 N -0.326 5.326 11 C -0.024 4.024 12 C -0.173 4.173 13 C -0.149 4.149 14 C 0.020 3.980 15 H 0.047 0.953 16 C -0.560 4.560 17 H 0.077 0.923 18 C -0.141 4.141 19 N -0.517 5.517 20 Si 0.720 3.280 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.008 4.008 25 C -0.207 4.207 26 C -0.021 4.021 27 N -0.259 5.259 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.107 0.893 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.167 0.833 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.142 0.858 44 H 0.064 0.936 45 H 0.163 0.837 46 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -7.267 10.158 -17.756 21.709 hybrid contribution 0.959 -0.896 1.154 1.748 sum -6.309 9.262 -16.602 20.030 Atomic orbital electron populations 1.21912 0.92949 1.03063 1.02920 1.22334 0.94404 0.92723 0.88042 1.22216 1.02195 0.95657 1.02508 1.86325 1.31528 1.64370 1.38528 1.19587 0.86239 0.90446 0.89442 1.21110 0.96037 0.99715 0.99562 1.20407 0.93711 0.95259 0.95110 1.18140 0.82755 0.82138 0.83884 1.90834 1.59701 1.41467 1.47623 1.48434 1.06177 1.41442 1.36521 1.21989 0.93992 0.92367 0.94102 1.21956 0.99151 0.98058 0.98087 1.21633 0.98553 0.97801 0.96876 1.18894 0.93141 0.93659 0.92279 0.95268 1.21061 0.93316 1.24425 1.17191 0.92302 1.25065 0.94879 0.96909 0.97212 1.69879 1.05982 1.37887 1.37975 0.86585 0.79830 0.79825 0.81713 1.20671 1.21168 1.19909 1.22299 0.98859 0.93419 0.86234 1.22264 1.02185 1.03038 0.93190 1.22305 0.89577 0.91716 0.98544 1.67086 1.10639 1.23698 1.24455 0.91579 0.90576 0.91777 0.89277 0.91961 0.91938 0.91207 0.83318 0.91688 0.90336 0.92075 0.92150 0.93100 0.92929 0.92582 0.85771 0.93561 0.83703 0.81957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.56 37.16 0.36 -0.82 16 2 C 0.08 0.81 3.11 -26.73 -0.08 0.73 16 3 C -0.17 -1.47 9.53 37.16 0.35 -1.12 16 4 O -0.30 -3.96 9.76 -18.76 -0.18 -4.14 16 5 C 0.32 4.51 7.45 -17.16 -0.13 4.38 16 6 C -0.14 -2.22 9.71 -38.84 -0.38 -2.60 16 7 C -0.03 -0.54 5.11 -104.68 -0.54 -1.07 16 8 C 0.55 11.01 7.36 -12.19 -0.09 10.92 16 9 O -0.52 -12.82 16.38 5.35 0.09 -12.73 16 10 N -0.59 -11.64 2.98 -174.02 -0.52 -12.16 16 11 C 0.10 1.48 4.97 -3.71 -0.02 1.47 16 12 C -0.13 -2.12 6.08 -26.61 -0.16 -2.29 16 13 C -0.11 -2.15 5.11 -26.69 -0.14 -2.29 16 14 C 0.04 0.96 2.24 -91.88 -0.21 0.75 16 15 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 16 C -0.52 -13.93 8.57 -34.44 -0.30 -14.22 16 17 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 18 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 19 N -0.88 -25.50 11.39 55.43 0.63 -24.87 16 20 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 24 C 0.11 2.64 5.39 -3.93 -0.02 2.62 16 25 C -0.19 -2.27 7.50 -39.03 -0.29 -2.57 16 26 C 0.13 1.43 11.17 -17.61 -0.20 1.23 16 27 N -0.53 -6.70 8.61 -13.38 -0.12 -6.81 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.09 0.92 6.98 -51.93 -0.36 0.55 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.15 2.39 8.06 -52.49 -0.42 1.97 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.08 1.01 4.79 -51.93 -0.25 0.77 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 43 H 0.12 3.46 5.11 -51.93 -0.27 3.20 16 44 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 45 H 0.15 1.52 6.74 -52.49 -0.35 1.17 16 46 H 0.16 1.14 8.06 -52.48 -0.42 0.72 16 LS Contribution 369.77 15.07 5.57 5.57 Total: -1.00 -31.60 369.77 -8.58 -40.19 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -7.11 Total: 2.13 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: -1.93 Total: -3.26 kcal Atomic # 7 Polarization: -43.83 SS G_CDS: 0.00 Total: -43.84 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: -0.10 Total: -16.87 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.60 -8.58 -40.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597908432.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.840 kcal (2) G-P(sol) polarization free energy of solvation -31.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds