Wall clock time and date at job start Tue Mar 31 2020 14:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47466 * 2 1 4 4 O 1.42897 * 109.47082 * 120.00250 * 2 1 3 5 5 C 1.35685 * 116.99859 * 149.99490 * 4 2 1 6 6 C 1.38899 * 119.62234 * 179.97438 * 5 4 2 7 7 C 1.39571 * 118.94761 * 179.97438 * 6 5 4 8 8 C 1.48161 * 120.89312 * 180.02562 * 7 6 5 9 9 O 1.21518 * 119.99555 * 40.85673 * 8 7 6 10 10 N 1.34769 * 120.00195 * 220.85732 * 8 7 6 11 11 C 1.46931 * 120.63184 * 5.90482 * 10 8 7 12 12 C 1.53194 * 108.77386 * 126.36831 * 11 10 8 13 13 C 1.53034 * 109.30993 * 54.63959 * 12 11 10 14 14 C 1.53039 * 109.53962 * 298.63009 * 13 12 11 15 15 H 1.09006 * 109.49974 * 301.41555 * 14 13 12 16 16 C 1.50696 * 109.49971 * 181.35347 * 14 13 12 17 17 H 1.08004 * 120.00331 * 359.97438 * 16 14 13 18 18 C 1.37879 * 120.00147 * 180.02562 * 16 14 13 19 19 N 1.31516 * 120.00119 * 359.97438 * 18 16 14 20 20 Si 1.86799 * 120.00159 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47647 * 89.99663 * 20 18 16 22 22 H 1.48501 * 109.47358 * 210.00076 * 20 18 16 23 23 H 1.48506 * 109.46859 * 329.99535 * 20 18 16 24 24 C 1.46924 * 120.63356 * 185.62835 * 10 8 7 25 25 C 1.39967 * 118.21662 * 0.02562 * 7 6 5 26 26 C 1.37983 * 119.13213 * 0.02562 * 25 7 6 27 27 N 1.31905 * 120.97933 * 359.97438 * 26 25 7 28 28 H 1.09007 * 109.47168 * 299.99885 * 1 2 3 29 29 H 1.09004 * 109.47470 * 59.99416 * 1 2 3 30 30 H 1.09000 * 109.47793 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46449 * 239.99955 * 2 1 3 32 32 H 1.08998 * 109.46655 * 59.99972 * 3 2 1 33 33 H 1.08999 * 109.47010 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.46889 * 300.00315 * 3 2 1 35 35 H 1.08000 * 120.52512 * 359.97438 * 6 5 4 36 36 H 1.08998 * 109.58625 * 246.15704 * 11 10 8 37 37 H 1.09003 * 109.58531 * 6.58353 * 11 10 8 38 38 H 1.08996 * 109.49354 * 174.59086 * 12 11 10 39 39 H 1.09002 * 109.49738 * 294.68703 * 12 11 10 40 40 H 1.08997 * 109.46750 * 58.65770 * 13 12 11 41 41 H 1.09003 * 109.45841 * 178.61470 * 13 12 11 42 42 H 0.96999 * 120.00295 * 180.02562 * 19 18 16 43 43 H 1.09005 * 109.58557 * 353.41636 * 24 10 8 44 44 H 1.08997 * 109.59199 * 113.84267 * 24 10 8 45 45 H 1.08001 * 120.43637 * 179.97438 * 25 7 6 46 46 H 1.08005 * 119.50776 * 180.02562 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 3.1987 -1.3131 1.0651 6 6 3.7134 -1.9852 2.1664 7 6 4.9408 -2.6386 2.0460 8 6 5.5294 -3.3690 3.1928 9 8 4.8194 -4.0426 3.9132 10 7 6.8522 -3.2863 3.4372 11 6 7.7022 -2.3767 2.6568 12 6 8.4773 -1.4755 3.6232 13 6 9.2409 -2.3455 4.6242 14 6 8.2495 -3.1832 5.4350 15 1 7.5541 -2.5231 5.9536 16 6 9.0000 -4.0149 6.4430 17 1 10.0767 -3.9529 6.4998 18 6 8.3121 -4.8557 7.2921 19 7 7.0010 -4.9317 7.2226 20 14 9.2424 -5.8861 8.5420 21 1 9.3784 -5.1238 9.8091 22 1 8.4972 -7.1446 8.7991 23 1 10.5913 -6.2092 8.0115 24 6 7.4708 -4.0996 4.4929 25 6 5.6007 -2.5854 0.8128 26 6 5.0197 -1.8945 -0.2307 27 7 3.8577 -1.2885 -0.0803 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3635 -1.0276 -0.0005 31 1 1.8932 -0.5139 -0.8901 32 1 1.6767 1.9562 0.8900 33 1 3.1301 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 3.1723 -2.0018 3.1009 36 1 8.4030 -2.9566 2.0562 37 1 7.0795 -1.7636 2.0053 38 1 9.1823 -0.8621 3.0623 39 1 7.7798 -0.8315 4.1588 40 1 9.9204 -3.0068 4.0865 41 1 9.8129 -1.7073 5.2977 42 1 6.5171 -5.5229 7.8202 43 1 6.6955 -4.6229 5.0526 44 1 8.1523 -4.8228 4.0451 45 1 6.5526 -3.0780 0.6800 46 1 5.5234 -1.8499 -1.1851 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597908432.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:35 Heat of formation + Delta-G solvation = -61.734366 kcal Electronic energy + Delta-G solvation = -26953.475651 eV Core-core repulsion = 23228.453017 eV Total energy + Delta-G solvation = -3725.022634 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.06892 -40.90189 -39.14662 -38.38914 -35.45546 -34.27195 -33.94957 -33.21093 -31.65362 -31.09539 -28.15655 -27.43985 -26.83192 -25.00467 -24.49259 -23.43634 -22.67923 -21.43246 -20.37573 -19.25718 -18.46371 -18.13663 -17.32387 -17.10063 -16.83024 -16.69492 -16.43645 -16.05886 -15.39709 -15.27628 -15.22663 -14.82780 -14.75442 -14.52636 -14.33725 -14.09417 -13.91635 -13.52898 -13.28828 -13.18355 -13.08009 -12.89925 -12.85600 -12.67356 -12.29626 -12.23769 -11.96423 -11.85961 -11.74641 -11.64198 -11.39444 -11.01863 -11.00832 -10.89519 -10.56046 -10.49733 -9.54404 -9.50481 -8.11803 -6.29498 -0.30264 0.07259 1.40031 1.41127 1.51993 1.58077 1.88466 2.18170 2.41584 2.68287 3.15634 3.21267 3.38817 3.85480 3.87754 3.97566 4.00559 4.04842 4.12113 4.15591 4.29448 4.31905 4.56585 4.57461 4.63611 4.71063 4.74653 4.77843 4.83123 4.84987 4.86699 4.90399 5.03305 5.08534 5.20419 5.23010 5.25310 5.27703 5.32759 5.38018 5.51098 5.60475 5.88035 5.98268 6.23020 6.30616 6.51141 6.71910 6.83844 7.11449 7.41215 8.91494 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.023358 B = 0.002932 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.437979 B = 9548.647019 C =10098.359814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.073 3.927 3 C -0.163 4.163 4 O -0.317 6.317 5 C 0.322 3.678 6 C -0.168 4.168 7 C -0.046 4.046 8 C 0.539 3.461 9 O -0.583 6.583 10 N -0.594 5.594 11 C 0.094 3.906 12 C -0.129 4.129 13 C -0.105 4.105 14 C 0.037 3.963 15 H -0.019 1.019 16 C -0.534 4.534 17 H 0.065 0.935 18 C 0.008 3.992 19 N -0.917 5.917 20 Si 0.958 3.042 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.259 1.259 24 C 0.124 3.876 25 C -0.175 4.175 26 C 0.154 3.846 27 N -0.529 5.529 28 H 0.062 0.938 29 H 0.103 0.897 30 H 0.057 0.943 31 H 0.090 0.910 32 H 0.057 0.943 33 H 0.050 0.950 34 H 0.094 0.906 35 H 0.124 0.876 36 H 0.098 0.902 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.042 0.958 40 H 0.064 0.936 41 H 0.051 0.949 42 H 0.259 0.741 43 H 0.076 0.924 44 H 0.049 0.951 45 H 0.172 0.828 46 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.294 11.624 -21.530 24.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.017 3.983 3 C -0.221 4.221 4 O -0.225 6.225 5 C 0.144 3.856 6 C -0.190 4.190 7 C -0.057 4.057 8 C 0.327 3.673 9 O -0.464 6.464 10 N -0.325 5.325 11 C -0.027 4.027 12 C -0.167 4.167 13 C -0.143 4.143 14 C 0.017 3.983 15 H -0.001 1.001 16 C -0.572 4.572 17 H 0.083 0.917 18 C -0.191 4.191 19 N -0.555 5.555 20 Si 0.784 3.216 21 H -0.203 1.203 22 H -0.215 1.215 23 H -0.183 1.183 24 C 0.002 3.998 25 C -0.196 4.196 26 C -0.002 4.002 27 N -0.254 5.254 28 H 0.082 0.918 29 H 0.121 0.879 30 H 0.076 0.924 31 H 0.108 0.892 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.113 0.887 35 H 0.142 0.858 36 H 0.116 0.884 37 H 0.125 0.875 38 H 0.127 0.873 39 H 0.061 0.939 40 H 0.083 0.917 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.094 0.906 44 H 0.067 0.933 45 H 0.189 0.811 46 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -5.348 11.671 -21.536 25.072 hybrid contribution 0.349 -1.290 2.259 2.624 sum -5.000 10.380 -19.278 22.458 Atomic orbital electron populations 1.21943 0.91407 1.03075 1.04109 1.22662 0.95647 0.93102 0.86872 1.22191 1.01358 0.94943 1.03574 1.86315 1.31282 1.64493 1.40447 1.19484 0.86636 0.90243 0.89262 1.20975 0.96573 1.01749 0.99705 1.20024 0.94364 0.96316 0.94989 1.18853 0.82551 0.81488 0.84434 1.90790 1.61143 1.44237 1.50196 1.48431 1.06666 1.41510 1.35855 1.22403 0.94268 0.92160 0.93903 1.21941 0.99400 0.97711 0.97605 1.21521 0.97662 0.97801 0.97273 1.18843 0.93358 0.93416 0.92638 1.00064 1.21514 0.93763 1.24261 1.17669 0.91680 1.25928 0.95516 0.98337 0.99357 1.70097 1.07762 1.38807 1.38881 0.85547 0.78973 0.77884 0.79223 1.20284 1.21455 1.18319 1.21721 0.97324 0.93649 0.87104 1.22535 1.02819 1.02665 0.91539 1.23144 0.88363 0.88978 0.99673 1.67259 1.11239 1.23636 1.23224 0.91848 0.87886 0.92382 0.89222 0.92347 0.93128 0.88686 0.85768 0.88357 0.87454 0.87316 0.93933 0.91699 0.93016 0.93172 0.90605 0.93300 0.81076 0.76817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.56 71.98 0.69 -1.40 16 2 C 0.07 1.35 3.11 30.59 0.10 1.44 16 3 C -0.16 -2.54 9.53 71.98 0.69 -1.86 16 4 O -0.32 -8.38 9.76 -90.04 -0.88 -9.25 16 5 C 0.32 8.86 7.45 84.80 0.63 9.49 16 6 C -0.17 -5.46 9.71 22.75 0.22 -5.24 16 7 C -0.05 -1.46 5.11 -19.90 -0.10 -1.57 16 8 C 0.54 22.77 7.36 86.88 0.64 23.41 16 9 O -0.58 -31.31 16.38 -3.77 -0.06 -31.37 16 10 N -0.59 -23.59 2.98 -822.78 -2.45 -26.04 16 11 C 0.09 2.53 4.97 86.36 0.43 2.96 16 12 C -0.13 -3.72 6.08 30.67 0.19 -3.54 16 13 C -0.10 -3.94 5.11 30.62 0.16 -3.79 16 14 C 0.04 1.85 2.24 -11.61 -0.03 1.82 16 15 H -0.02 -1.11 8.14 -2.38 -0.02 -1.13 16 16 C -0.53 -29.23 8.57 25.60 0.22 -29.01 16 17 H 0.07 3.40 7.74 -2.91 -0.02 3.37 16 18 C 0.01 0.45 5.30 84.65 0.45 0.89 16 19 N -0.92 -56.40 11.39 21.45 0.24 -56.16 16 20 Si 0.96 44.34 29.54 68.60 2.03 46.37 16 21 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 22 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 23 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 24 C 0.12 6.12 5.39 86.22 0.46 6.59 16 25 C -0.18 -3.68 7.50 22.63 0.17 -3.51 16 26 C 0.15 2.58 11.17 84.62 0.94 3.52 16 27 N -0.53 -11.72 8.61 -309.13 -2.66 -14.39 16 28 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 29 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.06 0.88 8.14 -2.39 -0.02 0.87 16 31 H 0.09 1.64 6.98 -2.38 -0.02 1.63 16 32 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 35 H 0.12 4.50 8.06 -2.91 -0.02 4.48 16 36 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.11 2.33 4.79 -2.39 -0.01 2.32 16 38 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 41 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 43 H 0.08 4.56 5.11 -2.38 -0.01 4.54 16 44 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 45 H 0.17 2.71 6.74 -2.91 -0.02 2.69 16 46 H 0.22 1.45 8.06 -2.91 -0.02 1.43 16 Total: -1.00 -77.26 369.77 3.04 -74.22 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: 0.97 Total: 16.40 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: 5.85 Total: 0.23 kcal Atomic # 7 Polarization: -91.72 SS G_CDS: -4.87 Total: -96.59 kcal Atomic # 8 Polarization: -39.68 SS G_CDS: -0.94 Total: -40.62 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -77.26 3.04 -74.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597908432.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.487 kcal (2) G-P(sol) polarization free energy of solvation -77.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds