Wall clock time and date at job start Tue Mar 31 2020 14:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47401 * 2 1 4 4 O 1.42906 * 109.46532 * 119.99806 * 2 1 3 5 5 C 1.35684 * 116.99802 * 90.00476 * 4 2 1 6 6 C 1.38893 * 119.61998 * 179.97438 * 5 4 2 7 7 C 1.39572 * 118.94589 * 179.71805 * 6 5 4 8 8 C 1.48162 * 120.89167 * 179.97438 * 7 6 5 9 9 O 1.21516 * 119.99773 * 310.25827 * 8 7 6 10 10 N 1.34779 * 120.00412 * 130.25955 * 8 7 6 11 11 C 1.46925 * 120.62682 * 3.68729 * 10 8 7 12 12 C 1.53197 * 108.77542 * 233.58708 * 11 10 8 13 13 C 1.53036 * 109.31193 * 305.36603 * 12 11 10 14 14 C 1.53042 * 109.54084 * 61.36144 * 13 12 11 15 15 H 1.09004 * 109.49220 * 58.61977 * 14 13 12 16 16 C 1.50692 * 109.50002 * 178.68085 * 14 13 12 17 17 H 1.08003 * 120.00174 * 0.02562 * 16 14 13 18 18 C 1.37879 * 120.00003 * 180.02562 * 16 14 13 19 19 N 1.31516 * 119.99950 * 0.02562 * 18 16 14 20 20 Si 1.86805 * 119.99843 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47228 * 60.00290 * 20 18 16 22 22 H 1.48501 * 109.46805 * 180.02562 * 20 18 16 23 23 H 1.48493 * 109.46946 * 299.99817 * 20 18 16 24 24 C 1.46924 * 120.63220 * 183.40988 * 10 8 7 25 25 C 1.39967 * 118.21975 * 0.02562 * 7 6 5 26 26 C 1.37987 * 119.12951 * 359.97438 * 25 7 6 27 27 N 1.31909 * 120.97775 * 0.02562 * 26 25 7 28 28 H 1.09001 * 109.46337 * 60.00076 * 1 2 3 29 29 H 1.08991 * 109.47292 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46949 * 300.00412 * 1 2 3 31 31 H 1.09004 * 109.47130 * 239.99542 * 2 1 3 32 32 H 1.08990 * 109.46993 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.46805 * 299.99470 * 3 2 1 34 34 H 1.09001 * 109.46892 * 59.99446 * 3 2 1 35 35 H 1.07999 * 120.52758 * 359.74743 * 6 5 4 36 36 H 1.09004 * 109.58954 * 353.37002 * 11 10 8 37 37 H 1.08995 * 109.58985 * 113.65676 * 11 10 8 38 38 H 1.08999 * 109.49217 * 65.31738 * 12 11 10 39 39 H 1.09000 * 109.49473 * 185.41338 * 12 11 10 40 40 H 1.08994 * 109.46090 * 181.38790 * 13 12 11 41 41 H 1.09005 * 109.45873 * 301.36256 * 13 12 11 42 42 H 0.96998 * 119.99821 * 179.97438 * 19 18 16 43 43 H 1.09006 * 109.58109 * 246.19758 * 24 10 8 44 44 H 1.08999 * 109.58860 * 6.62009 * 24 10 8 45 45 H 1.08002 * 120.43630 * 179.97438 * 25 7 6 46 46 H 1.07996 * 119.50543 * 180.02562 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0062 -0.6737 1.1669 5 6 2.2116 -2.0110 1.0654 6 6 2.6745 -2.7200 2.1664 7 6 2.8751 -4.0961 2.0480 8 6 3.3681 -4.8944 3.1947 9 8 4.3487 -4.5290 3.8125 10 7 2.7292 -6.0258 3.5527 11 6 1.5917 -6.5235 2.7671 12 6 0.3993 -6.7351 3.7055 13 6 0.8177 -7.6526 4.8566 14 6 1.9473 -6.9938 5.6517 15 1 1.6093 -6.0305 6.0338 16 6 2.3365 -7.8833 6.8041 17 1 1.8295 -8.8250 6.9546 18 6 3.3399 -7.4951 7.6664 19 7 3.9570 -6.3482 7.4834 20 14 3.8229 -8.5982 9.0945 21 1 4.2856 -9.9093 8.5728 22 1 4.9180 -7.9577 9.8663 23 1 2.6487 -8.8042 9.9799 24 6 3.1606 -6.7881 4.7322 25 6 2.5992 -4.7017 0.8167 26 6 2.1421 -3.9235 -0.2271 27 7 1.9641 -2.6250 -0.0786 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8900 32 1 3.1300 1.4424 0.0005 33 1 1.6768 1.9563 -0.8901 34 1 1.6767 1.9563 0.8900 35 1 2.8755 -2.2146 3.0994 36 1 1.3289 -5.7935 2.0014 37 1 1.8595 -7.4685 2.2945 38 1 0.0762 -5.7739 4.1053 39 1 -0.4208 -7.1945 3.1537 40 1 -0.0356 -7.8247 5.5124 41 1 1.1645 -8.6046 4.4545 42 1 4.6626 -6.0749 8.0902 43 1 3.5530 -7.7555 4.4186 44 1 3.9336 -6.2328 5.2635 45 1 2.7422 -5.7641 0.6852 46 1 1.9269 -4.3846 -1.1797 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597908433.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:39 Heat of formation + Delta-G solvation = -41.647470 kcal Electronic energy + Delta-G solvation = -26994.910793 eV Core-core repulsion = 23270.759192 eV Total energy + Delta-G solvation = -3724.151601 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.93295 -39.51429 -38.07410 -36.73373 -33.69072 -33.40085 -32.51064 -31.71800 -30.32666 -29.67363 -27.49950 -25.82786 -25.10639 -23.71064 -23.44036 -21.86210 -21.62228 -20.07263 -18.96785 -17.92058 -17.16458 -16.35685 -16.11929 -15.86129 -15.80190 -15.27159 -14.79439 -14.60347 -14.37597 -14.04526 -13.96560 -13.71902 -13.38319 -13.22412 -12.75822 -12.62046 -12.55663 -12.53958 -12.28536 -12.12650 -11.95196 -11.86419 -11.16650 -11.07815 -10.98353 -10.88144 -10.56111 -10.46006 -10.27092 -10.02060 -9.94433 -9.82530 -9.33835 -9.15289 -8.95753 -8.54351 -8.46215 -7.84745 -6.02383 -4.11277 0.89973 1.07813 2.76611 3.16306 3.30599 3.36981 3.37981 3.54362 3.77401 4.14632 4.40866 4.60605 4.65684 4.75415 4.88664 4.96584 5.01596 5.07909 5.27326 5.29835 5.30495 5.45147 5.48437 5.52527 5.58753 5.61609 5.66816 5.70612 5.88125 5.94382 5.95848 6.09957 6.13632 6.26889 6.27579 6.55820 6.61910 6.80492 6.92535 7.07885 7.16691 7.17794 7.58274 7.71406 7.81820 7.94365 8.12993 8.34228 8.67635 8.92623 9.54574 11.03160 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.021458 B = 0.003003 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.549013 B = 9322.461612 C = 9795.910458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.081 3.919 3 C -0.151 4.151 4 O -0.300 6.300 5 C 0.324 3.676 6 C -0.145 4.145 7 C -0.030 4.030 8 C 0.546 3.454 9 O -0.522 6.522 10 N -0.593 5.593 11 C 0.097 3.903 12 C -0.134 4.134 13 C -0.111 4.111 14 C 0.041 3.959 15 H 0.030 0.970 16 C -0.522 4.522 17 H 0.058 0.942 18 C 0.063 3.937 19 N -0.881 5.881 20 Si 0.893 3.107 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C 0.112 3.888 25 C -0.188 4.188 26 C 0.135 3.865 27 N -0.535 5.535 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.089 0.911 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.148 0.852 36 H 0.079 0.921 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.052 0.948 41 H 0.050 0.950 42 H 0.265 0.735 43 H 0.046 0.954 44 H 0.123 0.877 45 H 0.144 0.856 46 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.794 8.241 -18.177 21.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.025 3.975 3 C -0.208 4.208 4 O -0.207 6.207 5 C 0.145 3.855 6 C -0.167 4.167 7 C -0.041 4.041 8 C 0.332 3.668 9 O -0.399 6.399 10 N -0.325 5.325 11 C -0.026 4.026 12 C -0.172 4.172 13 C -0.149 4.149 14 C 0.022 3.978 15 H 0.048 0.952 16 C -0.561 4.561 17 H 0.077 0.923 18 C -0.140 4.140 19 N -0.518 5.518 20 Si 0.721 3.279 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.203 1.203 24 C -0.007 4.007 25 C -0.209 4.209 26 C -0.020 4.020 27 N -0.260 5.260 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.107 0.893 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.166 0.834 36 H 0.098 0.902 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.075 0.925 43 H 0.064 0.936 44 H 0.141 0.859 45 H 0.162 0.838 46 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -6.375 9.223 -18.207 21.383 hybrid contribution 0.427 -1.146 1.254 1.752 sum -5.948 8.077 -16.953 19.698 Atomic orbital electron populations 1.22214 0.94917 1.02936 1.02510 1.22339 0.94376 0.92761 0.88020 1.21911 1.02072 0.93940 1.02925 1.86328 1.80113 1.15778 1.38513 1.19576 0.91844 0.84685 0.89420 1.21074 1.03366 0.92664 0.99562 1.20380 0.95202 0.93431 0.95122 1.18138 0.84095 0.81268 0.83311 1.90829 1.25817 1.69705 1.53526 1.48464 1.30871 1.23717 1.29410 1.21990 0.87112 0.99348 0.94187 1.21947 0.96385 1.00989 0.97876 1.21637 0.99849 0.97677 0.95720 1.19043 0.89918 0.96625 0.92247 0.95221 1.21032 1.19359 1.05308 1.10388 0.92350 1.25059 0.96196 0.95069 0.97687 1.69869 1.23998 1.20342 1.37595 0.86638 0.78135 0.80710 0.82412 1.20226 1.21238 1.20278 1.22481 1.01784 0.94005 0.82468 1.22183 1.03548 1.01945 0.93206 1.22296 0.93724 0.87479 0.98488 1.67090 1.21573 1.12821 1.24498 0.91213 0.91927 0.91951 0.89282 0.91779 0.90572 0.91574 0.83392 0.90245 0.91647 0.92161 0.92109 0.92923 0.93096 0.92519 0.93553 0.85905 0.83814 0.81961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.50 9.53 37.16 0.35 -1.14 16 2 C 0.08 0.82 3.11 -26.73 -0.08 0.74 16 3 C -0.15 -1.19 9.56 37.16 0.36 -0.84 16 4 O -0.30 -3.99 9.76 -18.76 -0.18 -4.18 16 5 C 0.32 4.58 7.45 -17.16 -0.13 4.45 16 6 C -0.15 -2.28 9.78 -38.84 -0.38 -2.66 16 7 C -0.03 -0.49 5.05 -104.68 -0.53 -1.01 16 8 C 0.55 11.05 7.30 -12.18 -0.09 10.96 16 9 O -0.52 -12.86 16.48 5.35 0.09 -12.77 16 10 N -0.59 -11.66 2.97 -173.49 -0.51 -12.18 16 11 C 0.10 1.46 5.40 -3.71 -0.02 1.44 16 12 C -0.13 -2.12 6.08 -26.61 -0.16 -2.28 16 13 C -0.11 -2.16 5.10 -26.69 -0.14 -2.29 16 14 C 0.04 0.99 2.26 -91.43 -0.21 0.78 16 15 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 16 C -0.52 -13.94 8.56 -34.44 -0.29 -14.24 16 17 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 18 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 19 N -0.88 -25.47 11.41 55.43 0.63 -24.84 16 20 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 C 0.11 2.66 5.42 -3.49 -0.02 2.64 16 25 C -0.19 -2.30 7.47 -39.03 -0.29 -2.59 16 26 C 0.14 1.45 11.17 -17.61 -0.20 1.26 16 27 N -0.54 -6.75 8.62 -13.38 -0.12 -6.86 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.09 0.92 6.98 -51.93 -0.36 0.56 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.15 2.41 8.06 -52.49 -0.42 1.98 16 36 H 0.08 1.03 4.51 -51.93 -0.23 0.79 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 43 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.12 3.43 5.17 -51.93 -0.27 3.16 16 45 H 0.14 1.49 7.06 -52.49 -0.37 1.12 16 46 H 0.16 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 370.38 15.07 5.58 5.58 Total: -1.00 -31.55 370.38 -8.57 -40.12 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -7.12 Total: 2.20 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: -1.92 Total: -3.15 kcal Atomic # 7 Polarization: -43.88 SS G_CDS: 0.00 Total: -43.88 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -0.09 Total: -16.95 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.55 -8.57 -40.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597908433.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.528 kcal (2) G-P(sol) polarization free energy of solvation -31.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds