Wall clock time and date at job start Tue Mar 31 2020 14:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47401 * 2 1 4 4 O 1.42906 * 109.46532 * 119.99806 * 2 1 3 5 5 C 1.35684 * 116.99802 * 90.00476 * 4 2 1 6 6 C 1.38893 * 119.61998 * 179.97438 * 5 4 2 7 7 C 1.39572 * 118.94589 * 179.71805 * 6 5 4 8 8 C 1.48162 * 120.89167 * 179.97438 * 7 6 5 9 9 O 1.21516 * 119.99773 * 310.25827 * 8 7 6 10 10 N 1.34779 * 120.00412 * 130.25955 * 8 7 6 11 11 C 1.46925 * 120.62682 * 3.68729 * 10 8 7 12 12 C 1.53197 * 108.77542 * 233.58708 * 11 10 8 13 13 C 1.53036 * 109.31193 * 305.36603 * 12 11 10 14 14 C 1.53042 * 109.54084 * 61.36144 * 13 12 11 15 15 H 1.09004 * 109.49220 * 58.61977 * 14 13 12 16 16 C 1.50692 * 109.50002 * 178.68085 * 14 13 12 17 17 H 1.08003 * 120.00174 * 0.02562 * 16 14 13 18 18 C 1.37879 * 120.00003 * 180.02562 * 16 14 13 19 19 N 1.31516 * 119.99950 * 0.02562 * 18 16 14 20 20 Si 1.86805 * 119.99843 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47228 * 60.00290 * 20 18 16 22 22 H 1.48501 * 109.46805 * 180.02562 * 20 18 16 23 23 H 1.48493 * 109.46946 * 299.99817 * 20 18 16 24 24 C 1.46924 * 120.63220 * 183.40988 * 10 8 7 25 25 C 1.39967 * 118.21975 * 0.02562 * 7 6 5 26 26 C 1.37987 * 119.12951 * 359.97438 * 25 7 6 27 27 N 1.31909 * 120.97775 * 0.02562 * 26 25 7 28 28 H 1.09001 * 109.46337 * 60.00076 * 1 2 3 29 29 H 1.08991 * 109.47292 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46949 * 300.00412 * 1 2 3 31 31 H 1.09004 * 109.47130 * 239.99542 * 2 1 3 32 32 H 1.08990 * 109.46993 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.46805 * 299.99470 * 3 2 1 34 34 H 1.09001 * 109.46892 * 59.99446 * 3 2 1 35 35 H 1.07999 * 120.52758 * 359.74743 * 6 5 4 36 36 H 1.09004 * 109.58954 * 353.37002 * 11 10 8 37 37 H 1.08995 * 109.58985 * 113.65676 * 11 10 8 38 38 H 1.08999 * 109.49217 * 65.31738 * 12 11 10 39 39 H 1.09000 * 109.49473 * 185.41338 * 12 11 10 40 40 H 1.08994 * 109.46090 * 181.38790 * 13 12 11 41 41 H 1.09005 * 109.45873 * 301.36256 * 13 12 11 42 42 H 0.96998 * 119.99821 * 179.97438 * 19 18 16 43 43 H 1.09006 * 109.58109 * 246.19758 * 24 10 8 44 44 H 1.08999 * 109.58860 * 6.62009 * 24 10 8 45 45 H 1.08002 * 120.43630 * 179.97438 * 25 7 6 46 46 H 1.07996 * 119.50543 * 180.02562 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0062 -0.6737 1.1669 5 6 2.2116 -2.0110 1.0654 6 6 2.6745 -2.7200 2.1664 7 6 2.8751 -4.0961 2.0480 8 6 3.3681 -4.8944 3.1947 9 8 4.3487 -4.5290 3.8125 10 7 2.7292 -6.0258 3.5527 11 6 1.5917 -6.5235 2.7671 12 6 0.3993 -6.7351 3.7055 13 6 0.8177 -7.6526 4.8566 14 6 1.9473 -6.9938 5.6517 15 1 1.6093 -6.0305 6.0338 16 6 2.3365 -7.8833 6.8041 17 1 1.8295 -8.8250 6.9546 18 6 3.3399 -7.4951 7.6664 19 7 3.9570 -6.3482 7.4834 20 14 3.8229 -8.5982 9.0945 21 1 4.2856 -9.9093 8.5728 22 1 4.9180 -7.9577 9.8663 23 1 2.6487 -8.8042 9.9799 24 6 3.1606 -6.7881 4.7322 25 6 2.5992 -4.7017 0.8167 26 6 2.1421 -3.9235 -0.2271 27 7 1.9641 -2.6250 -0.0786 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8900 32 1 3.1300 1.4424 0.0005 33 1 1.6768 1.9563 -0.8901 34 1 1.6767 1.9563 0.8900 35 1 2.8755 -2.2146 3.0994 36 1 1.3289 -5.7935 2.0014 37 1 1.8595 -7.4685 2.2945 38 1 0.0762 -5.7739 4.1053 39 1 -0.4208 -7.1945 3.1537 40 1 -0.0356 -7.8247 5.5124 41 1 1.1645 -8.6046 4.4545 42 1 4.6626 -6.0749 8.0902 43 1 3.5530 -7.7555 4.4186 44 1 3.9336 -6.2328 5.2635 45 1 2.7422 -5.7641 0.6852 46 1 1.9269 -4.3846 -1.1797 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597908433.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:38 Heat of formation + Delta-G solvation = -62.237401 kcal Electronic energy + Delta-G solvation = -26995.803640 eV Core-core repulsion = 23270.759192 eV Total energy + Delta-G solvation = -3725.044447 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.06553 -40.89783 -39.14633 -38.37847 -35.43266 -34.27291 -33.94893 -33.21888 -31.63723 -31.10723 -28.15772 -27.44311 -26.82607 -25.00934 -24.49854 -23.44489 -22.68197 -21.43218 -20.36296 -19.27491 -18.45166 -18.12326 -17.37855 -17.14886 -16.83692 -16.69610 -16.44558 -16.02774 -15.38565 -15.30652 -15.24011 -14.81817 -14.78840 -14.51365 -14.32573 -14.10932 -13.85781 -13.53717 -13.28847 -13.18529 -13.08198 -12.87128 -12.85271 -12.69984 -12.30269 -12.28004 -11.96362 -11.86489 -11.74554 -11.65660 -11.41943 -11.02594 -11.00885 -10.89702 -10.56747 -10.48352 -9.54593 -9.51551 -8.12492 -6.29655 -0.26006 0.06808 1.40571 1.41577 1.50223 1.51264 1.90197 2.17361 2.41489 2.66323 3.15168 3.20909 3.37822 3.85358 3.87488 3.98105 4.01073 4.04743 4.11841 4.15075 4.29324 4.31402 4.55661 4.57448 4.62983 4.71024 4.73890 4.76683 4.82767 4.84453 4.86638 4.90251 5.02926 5.08051 5.20418 5.22350 5.24488 5.27731 5.32459 5.37540 5.50291 5.59278 5.86862 5.96017 6.22894 6.30021 6.49874 6.71938 6.82959 7.09822 7.40895 8.91018 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.021458 B = 0.003003 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.549013 B = 9322.461612 C = 9795.910458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.073 3.927 3 C -0.148 4.148 4 O -0.318 6.318 5 C 0.324 3.676 6 C -0.172 4.172 7 C -0.043 4.043 8 C 0.540 3.460 9 O -0.584 6.584 10 N -0.594 5.594 11 C 0.092 3.908 12 C -0.128 4.128 13 C -0.105 4.105 14 C 0.038 3.962 15 H -0.016 1.016 16 C -0.535 4.535 17 H 0.065 0.935 18 C 0.009 3.991 19 N -0.917 5.917 20 Si 0.958 3.042 21 H -0.265 1.265 22 H -0.291 1.291 23 H -0.268 1.268 24 C 0.125 3.875 25 C -0.178 4.178 26 C 0.156 3.844 27 N -0.530 5.530 28 H 0.095 0.905 29 H 0.050 0.950 30 H 0.057 0.943 31 H 0.090 0.910 32 H 0.057 0.943 33 H 0.103 0.897 34 H 0.062 0.938 35 H 0.123 0.877 36 H 0.109 0.891 37 H 0.096 0.904 38 H 0.043 0.957 39 H 0.108 0.892 40 H 0.052 0.948 41 H 0.063 0.937 42 H 0.259 0.741 43 H 0.047 0.953 44 H 0.075 0.925 45 H 0.172 0.828 46 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.896 6.928 -21.769 24.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.017 3.983 3 C -0.205 4.205 4 O -0.226 6.226 5 C 0.146 3.854 6 C -0.194 4.194 7 C -0.054 4.054 8 C 0.328 3.672 9 O -0.465 6.465 10 N -0.324 5.324 11 C -0.029 4.029 12 C -0.166 4.166 13 C -0.143 4.143 14 C 0.019 3.981 15 H 0.002 0.998 16 C -0.574 4.574 17 H 0.083 0.917 18 C -0.191 4.191 19 N -0.556 5.556 20 Si 0.784 3.216 21 H -0.190 1.190 22 H -0.217 1.217 23 H -0.193 1.193 24 C 0.003 3.997 25 C -0.198 4.198 26 C 0.000 4.000 27 N -0.255 5.255 28 H 0.113 0.887 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.108 0.892 32 H 0.076 0.924 33 H 0.121 0.879 34 H 0.081 0.919 35 H 0.141 0.859 36 H 0.127 0.873 37 H 0.114 0.886 38 H 0.062 0.938 39 H 0.126 0.874 40 H 0.070 0.930 41 H 0.082 0.918 42 H 0.068 0.932 43 H 0.065 0.935 44 H 0.093 0.907 45 H 0.190 0.810 46 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -8.533 7.903 -21.826 24.732 hybrid contribution 1.035 -0.698 2.303 2.620 sum -7.498 7.205 -19.523 22.120 Atomic orbital electron populations 1.22189 0.93859 1.02452 1.03566 1.22667 0.95281 0.93471 0.86856 1.21943 1.01729 0.92756 1.04108 1.86318 1.80180 1.15609 1.40451 1.19469 0.91639 0.85078 0.89245 1.20936 1.05663 0.93070 0.99706 1.20010 0.97299 0.92996 0.95056 1.18840 0.83241 0.81205 0.83909 1.90784 1.28641 1.71063 1.55976 1.48463 1.31983 1.23377 1.28567 1.22396 0.84956 1.01502 0.94060 1.21926 0.98017 0.99634 0.96983 1.21526 0.97725 0.98505 0.96534 1.18983 0.91934 0.94469 0.92696 0.99831 1.21493 1.19004 1.05674 1.11197 0.91706 1.25920 0.96368 0.96282 1.00497 1.70084 1.24585 1.22377 1.38522 0.85604 0.77764 0.79081 0.79200 1.18972 1.21660 1.19345 1.21902 1.00392 0.93556 0.83875 1.22473 1.02403 1.03415 0.91521 1.23145 0.90755 0.86464 0.99623 1.67263 1.21145 1.13821 1.23240 0.88667 0.93115 0.92379 0.89195 0.92376 0.87859 0.91875 0.85916 0.87275 0.88571 0.93817 0.87390 0.92961 0.91806 0.93151 0.93457 0.90715 0.81042 0.76781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.59 9.53 71.98 0.69 -1.90 16 2 C 0.07 1.37 3.11 30.60 0.10 1.46 16 3 C -0.15 -2.13 9.56 71.98 0.69 -1.44 16 4 O -0.32 -8.49 9.76 -90.03 -0.88 -9.37 16 5 C 0.32 9.01 7.45 84.80 0.63 9.64 16 6 C -0.17 -5.64 9.78 22.75 0.22 -5.42 16 7 C -0.04 -1.37 5.05 -19.90 -0.10 -1.47 16 8 C 0.54 22.86 7.30 86.88 0.63 23.50 16 9 O -0.58 -31.22 16.48 -3.77 -0.06 -31.28 16 10 N -0.59 -23.70 2.97 -821.10 -2.44 -26.13 16 11 C 0.09 2.51 5.40 86.36 0.47 2.98 16 12 C -0.13 -3.70 6.08 30.67 0.19 -3.52 16 13 C -0.11 -3.96 5.10 30.62 0.16 -3.81 16 14 C 0.04 1.93 2.26 -11.32 -0.03 1.90 16 15 H -0.02 -0.97 8.14 -2.38 -0.02 -0.99 16 16 C -0.54 -29.32 8.56 25.60 0.22 -29.10 16 17 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 18 C 0.01 0.49 5.30 84.66 0.45 0.94 16 19 N -0.92 -56.32 11.41 21.45 0.24 -56.07 16 20 Si 0.96 44.33 29.54 68.60 2.03 46.35 16 21 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 22 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 23 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 24 C 0.12 6.18 5.42 86.51 0.47 6.65 16 25 C -0.18 -3.75 7.47 22.63 0.17 -3.58 16 26 C 0.16 2.62 11.17 84.62 0.94 3.57 16 27 N -0.53 -11.85 8.62 -309.14 -2.66 -14.51 16 28 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.09 1.67 6.98 -2.39 -0.02 1.65 16 32 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.12 4.50 8.06 -2.91 -0.02 4.47 16 36 H 0.11 2.37 4.51 -2.39 -0.01 2.36 16 37 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 40 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 42 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 43 H 0.05 2.28 8.14 -2.38 -0.02 2.26 16 44 H 0.07 4.50 5.17 -2.39 -0.01 4.48 16 45 H 0.17 2.67 7.06 -2.91 -0.02 2.65 16 46 H 0.22 1.45 8.06 -2.91 -0.02 1.43 16 Total: -1.00 -77.00 370.38 3.09 -73.91 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: 0.97 Total: 16.70 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: 5.89 Total: 0.41 kcal Atomic # 7 Polarization: -91.86 SS G_CDS: -4.85 Total: -96.71 kcal Atomic # 8 Polarization: -39.71 SS G_CDS: -0.94 Total: -40.65 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.35 kcal Total: -77.00 3.09 -73.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597908433.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.669 kcal (2) G-P(sol) polarization free energy of solvation -76.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds