Wall clock time and date at job start Tue Mar 31 2020 14:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47281 * 2 1 4 4 O 1.42896 * 109.47216 * 120.00150 * 2 1 3 5 5 C 1.35502 * 116.99998 * 149.99519 * 4 2 1 6 6 C 1.39169 * 119.52197 * 179.97438 * 5 4 2 7 7 C 1.37956 * 119.25528 * 179.97438 * 6 5 4 8 8 C 1.40281 * 118.36474 * 359.97438 * 7 6 5 9 9 C 1.47615 * 120.50139 * 180.02562 * 8 7 6 10 10 O 1.21576 * 119.99607 * 309.44520 * 9 8 7 11 11 N 1.34768 * 119.99876 * 129.44700 * 9 8 7 12 12 C 1.46930 * 120.63426 * 3.80677 * 11 9 8 13 13 C 1.53198 * 108.77472 * 233.58598 * 12 11 9 14 14 C 1.53036 * 109.31075 * 305.36130 * 13 12 11 15 15 C 1.53040 * 109.53871 * 61.36721 * 14 13 12 16 16 H 1.09002 * 109.49975 * 58.58307 * 15 14 13 17 17 C 1.50704 * 109.49738 * 178.64674 * 15 14 13 18 18 H 1.07991 * 120.00277 * 0.02562 * 17 15 14 19 19 C 1.37884 * 120.00008 * 179.97438 * 17 15 14 20 20 N 1.31512 * 119.99794 * 359.97438 * 19 17 15 21 21 Si 1.86794 * 119.99936 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47252 * 90.00208 * 21 19 17 23 23 H 1.48504 * 109.46923 * 209.99678 * 21 19 17 24 24 H 1.48493 * 109.47185 * 330.00023 * 21 19 17 25 25 C 1.46932 * 120.62959 * 183.52421 * 11 9 8 26 26 C 1.39523 * 118.99981 * 0.02562 * 8 7 6 27 27 N 1.31674 * 120.62847 * 359.74551 * 26 8 7 28 28 H 1.09001 * 109.47070 * 59.99256 * 1 2 3 29 29 H 1.08996 * 109.46925 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46721 * 300.00409 * 1 2 3 31 31 H 1.08998 * 109.46576 * 240.00125 * 2 1 3 32 32 H 1.09003 * 109.47295 * 59.99795 * 3 2 1 33 33 H 1.08994 * 109.47328 * 180.02562 * 3 2 1 34 34 H 1.09005 * 109.47210 * 300.00205 * 3 2 1 35 35 H 1.07994 * 120.36979 * 0.02562 * 6 5 4 36 36 H 1.08000 * 120.81771 * 179.97438 * 7 6 5 37 37 H 1.08995 * 109.58556 * 353.37198 * 12 11 9 38 38 H 1.08999 * 109.58723 * 113.65933 * 12 11 9 39 39 H 1.09000 * 109.49634 * 65.31560 * 13 12 11 40 40 H 1.09003 * 109.49467 * 185.41253 * 13 12 11 41 41 H 1.09004 * 109.45968 * 181.38581 * 14 13 12 42 42 H 1.08999 * 109.46508 * 301.34845 * 14 13 12 43 43 H 0.96996 * 120.00028 * 180.02562 * 20 19 17 44 44 H 1.08998 * 109.58556 * 246.19933 * 25 11 9 45 45 H 1.09001 * 109.58579 * 6.62788 * 25 11 9 46 46 H 1.08001 * 119.68461 * 180.02562 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 3.1972 -1.3122 1.0653 6 6 3.7109 -1.9849 2.1700 7 6 4.9235 -2.6336 2.0604 8 6 5.5945 -2.5888 0.8293 9 6 6.8946 -3.2670 0.6595 10 8 7.7895 -3.0746 1.4595 11 7 7.0893 -4.0993 -0.3825 12 6 6.0475 -4.2779 -1.4030 13 6 5.7496 -5.7737 -1.5470 14 6 7.0514 -6.5230 -1.8400 15 6 8.0242 -6.3344 -0.6738 16 1 7.5676 -6.7042 0.2443 17 6 9.2930 -7.0998 -0.9483 18 1 9.3960 -7.6642 -1.8632 19 6 10.3229 -7.0787 -0.0317 20 7 10.1981 -6.3902 1.0818 21 14 11.8958 -8.0269 -0.3723 22 1 12.8537 -7.1531 -1.0963 23 1 12.4985 -8.4638 0.9127 24 1 11.5859 -9.2174 -1.2039 25 6 8.3501 -4.8407 -0.5228 26 6 5.0145 -1.8935 -0.2322 27 7 3.8525 -1.2918 -0.0850 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.6768 1.9564 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8900 35 1 3.1660 -1.9996 3.1023 36 1 5.3458 -3.1630 2.9017 37 1 5.1426 -3.7529 -1.0971 38 1 6.3969 -3.8794 -2.3555 39 1 5.3144 -6.1488 -0.6208 40 1 5.0486 -5.9276 -2.3674 41 1 6.8386 -7.5845 -1.9674 42 1 7.4988 -6.1304 -2.7532 43 1 10.9227 -6.3750 1.7264 44 1 8.8842 -4.4895 -1.4056 45 1 8.9649 -4.6873 0.3641 46 1 5.5213 -1.8522 -1.1850 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597912460.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:45 Heat of formation + Delta-G solvation = -43.404584 kcal Electronic energy + Delta-G solvation = -26948.893539 eV Core-core repulsion = 23224.665744 eV Total energy + Delta-G solvation = -3724.227795 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.96422 -39.51697 -38.04519 -36.65792 -33.69443 -33.30336 -32.58997 -31.85386 -30.58526 -29.50998 -27.56219 -25.35143 -25.11609 -24.12972 -23.31539 -21.87413 -21.33413 -20.09882 -18.76706 -18.50997 -17.31842 -16.80049 -16.14186 -15.90577 -15.39092 -14.95789 -14.74618 -14.60679 -14.27938 -14.02023 -13.79124 -13.71253 -13.39287 -13.16258 -12.80244 -12.66915 -12.61596 -12.58329 -12.42098 -12.24242 -12.05591 -11.86740 -11.21116 -11.06470 -11.00680 -10.86568 -10.54115 -10.41544 -10.26340 -10.03991 -9.92861 -9.87591 -9.32791 -9.15653 -8.93146 -8.50061 -8.45626 -7.79345 -6.01843 -4.10410 0.87591 1.12794 2.80306 3.13530 3.29864 3.37451 3.39497 3.54865 3.81938 4.08996 4.41528 4.57733 4.69148 4.75243 4.80596 4.93959 4.98716 5.05691 5.24535 5.27294 5.29696 5.42308 5.46114 5.48793 5.53463 5.55749 5.64656 5.73893 5.84585 5.91098 5.95559 6.08345 6.16395 6.27499 6.28727 6.57588 6.64319 6.82832 6.94424 7.08041 7.11972 7.22110 7.60580 7.65326 7.83928 7.96664 8.18711 8.36004 8.76931 8.93915 9.55378 11.03710 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.028881 B = 0.002838 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.256423 B = 9862.046078 C =10352.117254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.080 3.920 3 C -0.169 4.169 4 O -0.301 6.301 5 C 0.331 3.669 6 C -0.194 4.194 7 C 0.005 3.995 8 C -0.203 4.203 9 C 0.555 3.445 10 O -0.530 6.530 11 N -0.597 5.597 12 C 0.100 3.900 13 C -0.133 4.133 14 C -0.111 4.111 15 C 0.041 3.959 16 H 0.029 0.971 17 C -0.521 4.521 18 H 0.058 0.942 19 C 0.063 3.937 20 N -0.881 5.881 21 Si 0.893 3.107 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.274 1.274 25 C 0.113 3.887 26 C 0.169 3.831 27 N -0.542 5.542 28 H 0.076 0.924 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.091 0.909 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.145 0.855 36 H 0.149 0.851 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.052 0.948 42 H 0.050 0.950 43 H 0.264 0.736 44 H 0.045 0.955 45 H 0.123 0.877 46 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.135 11.772 -3.041 21.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.024 3.976 3 C -0.226 4.226 4 O -0.208 6.208 5 C 0.152 3.848 6 C -0.215 4.215 7 C -0.021 4.021 8 C -0.209 4.209 9 C 0.341 3.659 10 O -0.407 6.407 11 N -0.329 5.329 12 C -0.023 4.023 13 C -0.171 4.171 14 C -0.148 4.148 15 C 0.021 3.979 16 H 0.047 0.953 17 C -0.560 4.560 18 H 0.077 0.923 19 C -0.140 4.140 20 N -0.518 5.518 21 Si 0.720 3.280 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.199 1.199 25 C -0.007 4.007 26 C 0.012 3.988 27 N -0.265 5.265 28 H 0.095 0.905 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.109 0.891 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.163 0.837 36 H 0.167 0.833 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.074 0.926 44 H 0.063 0.937 45 H 0.141 0.859 46 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -18.110 12.391 -2.927 22.137 hybrid contribution 1.228 -0.880 0.280 1.536 sum -16.882 11.511 -2.647 20.604 Atomic orbital electron populations 1.21908 0.92910 1.03020 1.02920 1.22365 0.94385 0.92788 0.88106 1.22216 1.02289 0.95597 1.02502 1.86258 1.31706 1.64152 1.38705 1.19943 0.85733 0.89318 0.89792 1.20980 0.98091 1.03203 0.99196 1.21459 0.91484 0.92783 0.96364 1.21015 0.98670 1.05154 0.96062 1.17934 0.86346 0.79738 0.81902 1.90818 1.43565 1.62996 1.43327 1.48471 1.18568 1.42763 1.23082 1.21904 0.91095 0.97573 0.91756 1.21936 0.99123 0.94875 1.01178 1.21633 0.94327 0.98635 1.00248 1.19048 0.94003 0.91355 0.93456 0.95255 1.21077 0.99685 1.30230 1.04968 0.92329 1.25056 0.98695 0.95327 0.94956 1.69878 1.32772 1.40314 1.08871 0.86585 0.83506 0.80230 0.77641 1.20625 1.21207 1.19942 1.22440 0.82317 0.92212 1.03734 1.22631 0.88869 0.89510 0.97791 1.67242 1.10634 1.24247 1.24416 0.90511 0.91785 0.91691 0.89064 0.92055 0.91885 0.91112 0.83689 0.83322 0.90843 0.91670 0.92168 0.92196 0.92968 0.93108 0.92615 0.93704 0.85913 0.81778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.56 37.16 0.36 -0.68 16 2 C 0.08 0.74 3.11 -26.73 -0.08 0.65 16 3 C -0.17 -1.40 9.53 37.16 0.35 -1.05 16 4 O -0.30 -3.49 9.75 -18.20 -0.18 -3.66 16 5 C 0.33 4.22 7.46 -16.96 -0.13 4.09 16 6 C -0.19 -2.36 10.02 -39.34 -0.39 -2.76 16 7 C 0.00 0.07 9.88 -38.92 -0.38 -0.32 16 8 C -0.20 -3.18 5.02 -104.82 -0.53 -3.70 16 9 C 0.56 11.05 7.25 -12.44 -0.09 10.96 16 10 O -0.53 -12.85 16.48 5.30 0.09 -12.77 16 11 N -0.60 -11.69 2.97 -173.70 -0.52 -12.21 16 12 C 0.10 1.53 5.38 -3.71 -0.02 1.51 16 13 C -0.13 -2.12 6.08 -26.61 -0.16 -2.28 16 14 C -0.11 -2.15 5.10 -26.69 -0.14 -2.29 16 15 C 0.04 0.98 2.26 -91.43 -0.21 0.77 16 16 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 17 C -0.52 -13.90 8.56 -34.44 -0.29 -14.19 16 18 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 19 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 20 N -0.88 -25.40 11.41 55.43 0.63 -24.76 16 21 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 24 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 25 C 0.11 2.67 5.42 -3.48 -0.02 2.65 16 26 C 0.17 2.27 8.54 -17.14 -0.15 2.12 16 27 N -0.54 -7.05 8.61 -12.96 -0.11 -7.16 16 28 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.09 0.91 6.96 -51.93 -0.36 0.55 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.15 1.42 8.06 -52.49 -0.42 1.00 16 36 H 0.15 1.99 8.06 -52.49 -0.42 1.57 16 37 H 0.07 0.98 4.55 -51.93 -0.24 0.75 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 43 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 44 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.12 3.42 5.17 -51.93 -0.27 3.15 16 46 H 0.17 1.94 7.05 -52.49 -0.37 1.57 16 LS Contribution 370.29 15.07 5.58 5.58 Total: -1.00 -31.17 370.29 -8.62 -39.78 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -7.12 Total: 2.03 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: -1.97 Total: -2.88 kcal Atomic # 7 Polarization: -44.14 SS G_CDS: 0.01 Total: -44.13 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: -0.09 Total: -16.43 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.17 -8.62 -39.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597912460.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.620 kcal (2) G-P(sol) polarization free energy of solvation -31.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds