Wall clock time and date at job start Tue Mar 31 2020 14:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47281 * 2 1 4 4 O 1.42896 * 109.47216 * 120.00150 * 2 1 3 5 5 C 1.35502 * 116.99998 * 149.99519 * 4 2 1 6 6 C 1.39169 * 119.52197 * 179.97438 * 5 4 2 7 7 C 1.37956 * 119.25528 * 179.97438 * 6 5 4 8 8 C 1.40281 * 118.36474 * 359.97438 * 7 6 5 9 9 C 1.47615 * 120.50139 * 180.02562 * 8 7 6 10 10 O 1.21576 * 119.99607 * 309.44520 * 9 8 7 11 11 N 1.34768 * 119.99876 * 129.44700 * 9 8 7 12 12 C 1.46930 * 120.63426 * 3.80677 * 11 9 8 13 13 C 1.53198 * 108.77472 * 233.58598 * 12 11 9 14 14 C 1.53036 * 109.31075 * 305.36130 * 13 12 11 15 15 C 1.53040 * 109.53871 * 61.36721 * 14 13 12 16 16 H 1.09002 * 109.49975 * 58.58307 * 15 14 13 17 17 C 1.50704 * 109.49738 * 178.64674 * 15 14 13 18 18 H 1.07991 * 120.00277 * 0.02562 * 17 15 14 19 19 C 1.37884 * 120.00008 * 179.97438 * 17 15 14 20 20 N 1.31512 * 119.99794 * 359.97438 * 19 17 15 21 21 Si 1.86794 * 119.99936 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47252 * 90.00208 * 21 19 17 23 23 H 1.48504 * 109.46923 * 209.99678 * 21 19 17 24 24 H 1.48493 * 109.47185 * 330.00023 * 21 19 17 25 25 C 1.46932 * 120.62959 * 183.52421 * 11 9 8 26 26 C 1.39523 * 118.99981 * 0.02562 * 8 7 6 27 27 N 1.31674 * 120.62847 * 359.74551 * 26 8 7 28 28 H 1.09001 * 109.47070 * 59.99256 * 1 2 3 29 29 H 1.08996 * 109.46925 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46721 * 300.00409 * 1 2 3 31 31 H 1.08998 * 109.46576 * 240.00125 * 2 1 3 32 32 H 1.09003 * 109.47295 * 59.99795 * 3 2 1 33 33 H 1.08994 * 109.47328 * 180.02562 * 3 2 1 34 34 H 1.09005 * 109.47210 * 300.00205 * 3 2 1 35 35 H 1.07994 * 120.36979 * 0.02562 * 6 5 4 36 36 H 1.08000 * 120.81771 * 179.97438 * 7 6 5 37 37 H 1.08995 * 109.58556 * 353.37198 * 12 11 9 38 38 H 1.08999 * 109.58723 * 113.65933 * 12 11 9 39 39 H 1.09000 * 109.49634 * 65.31560 * 13 12 11 40 40 H 1.09003 * 109.49467 * 185.41253 * 13 12 11 41 41 H 1.09004 * 109.45968 * 181.38581 * 14 13 12 42 42 H 1.08999 * 109.46508 * 301.34845 * 14 13 12 43 43 H 0.96996 * 120.00028 * 180.02562 * 20 19 17 44 44 H 1.08998 * 109.58556 * 246.19933 * 25 11 9 45 45 H 1.09001 * 109.58579 * 6.62788 * 25 11 9 46 46 H 1.08001 * 119.68461 * 180.02562 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 3.1972 -1.3122 1.0653 6 6 3.7109 -1.9849 2.1700 7 6 4.9235 -2.6336 2.0604 8 6 5.5945 -2.5888 0.8293 9 6 6.8946 -3.2670 0.6595 10 8 7.7895 -3.0746 1.4595 11 7 7.0893 -4.0993 -0.3825 12 6 6.0475 -4.2779 -1.4030 13 6 5.7496 -5.7737 -1.5470 14 6 7.0514 -6.5230 -1.8400 15 6 8.0242 -6.3344 -0.6738 16 1 7.5676 -6.7042 0.2443 17 6 9.2930 -7.0998 -0.9483 18 1 9.3960 -7.6642 -1.8632 19 6 10.3229 -7.0787 -0.0317 20 7 10.1981 -6.3902 1.0818 21 14 11.8958 -8.0269 -0.3723 22 1 12.8537 -7.1531 -1.0963 23 1 12.4985 -8.4638 0.9127 24 1 11.5859 -9.2174 -1.2039 25 6 8.3501 -4.8407 -0.5228 26 6 5.0145 -1.8935 -0.2322 27 7 3.8525 -1.2918 -0.0850 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.6768 1.9564 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8900 35 1 3.1660 -1.9996 3.1023 36 1 5.3458 -3.1630 2.9017 37 1 5.1426 -3.7529 -1.0971 38 1 6.3969 -3.8794 -2.3555 39 1 5.3144 -6.1488 -0.6208 40 1 5.0486 -5.9276 -2.3674 41 1 6.8386 -7.5845 -1.9674 42 1 7.4988 -6.1304 -2.7532 43 1 10.9227 -6.3750 1.7264 44 1 8.8842 -4.4895 -1.4056 45 1 8.9649 -4.6873 0.3641 46 1 5.5213 -1.8522 -1.1850 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597912460.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:44 Heat of formation + Delta-G solvation = -63.081610 kcal Electronic energy + Delta-G solvation = -26949.746799 eV Core-core repulsion = 23224.665744 eV Total energy + Delta-G solvation = -3725.081055 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.07019 -40.86017 -39.13164 -38.28313 -35.36101 -34.29129 -33.67847 -33.48454 -31.94865 -31.01720 -28.14726 -27.14358 -26.64686 -25.18045 -24.58555 -23.45519 -22.18445 -21.63619 -20.16675 -19.56346 -18.79702 -18.17012 -17.79967 -17.05385 -16.72260 -16.50323 -16.03298 -15.78143 -15.42945 -15.36855 -15.14925 -14.83421 -14.52242 -14.47131 -14.34005 -14.06571 -13.78315 -13.70173 -13.45869 -13.26779 -13.15370 -12.88360 -12.88137 -12.64888 -12.29705 -12.24311 -11.94066 -11.83623 -11.72064 -11.65293 -11.29069 -11.05669 -10.97080 -10.86998 -10.59278 -10.50332 -9.61360 -9.40783 -8.10996 -6.27513 -0.23038 0.07597 1.41256 1.41951 1.52580 1.66282 1.91931 2.14295 2.42698 2.62608 3.10794 3.17651 3.48926 3.72845 3.90504 3.98048 4.01840 4.03241 4.06294 4.15410 4.31224 4.32301 4.53486 4.57739 4.64600 4.72587 4.74167 4.77963 4.83525 4.84617 4.88254 4.94227 5.04071 5.09133 5.21961 5.23953 5.26257 5.29595 5.31403 5.36402 5.53776 5.61913 5.89563 5.98764 6.16572 6.32734 6.57914 6.62051 6.85137 7.21234 7.42733 8.92743 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.028881 B = 0.002838 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.256423 B = 9862.046078 C =10352.117254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.071 3.929 3 C -0.165 4.165 4 O -0.304 6.304 5 C 0.333 3.667 6 C -0.186 4.186 7 C -0.001 4.001 8 C -0.222 4.222 9 C 0.552 3.448 10 O -0.588 6.588 11 N -0.599 5.599 12 C 0.097 3.903 13 C -0.126 4.126 14 C -0.105 4.105 15 C 0.039 3.961 16 H -0.013 1.013 17 C -0.534 4.534 18 H 0.063 0.937 19 C 0.010 3.990 20 N -0.916 5.916 21 Si 0.957 3.043 22 H -0.275 1.275 23 H -0.288 1.288 24 H -0.263 1.263 25 C 0.125 3.875 26 C 0.180 3.820 27 N -0.539 5.539 28 H 0.097 0.903 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.064 0.936 33 H 0.043 0.957 34 H 0.091 0.909 35 H 0.171 0.829 36 H 0.145 0.855 37 H 0.099 0.901 38 H 0.091 0.909 39 H 0.047 0.953 40 H 0.103 0.897 41 H 0.052 0.948 42 H 0.061 0.939 43 H 0.260 0.740 44 H 0.043 0.957 45 H 0.077 0.923 46 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.739 12.586 -5.096 24.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.015 3.985 3 C -0.223 4.223 4 O -0.211 6.211 5 C 0.154 3.846 6 C -0.206 4.206 7 C -0.026 4.026 8 C -0.228 4.228 9 C 0.341 3.659 10 O -0.469 6.469 11 N -0.329 5.329 12 C -0.024 4.024 13 C -0.164 4.164 14 C -0.142 4.142 15 C 0.020 3.980 16 H 0.005 0.995 17 C -0.573 4.573 18 H 0.081 0.919 19 C -0.190 4.190 20 N -0.555 5.555 21 Si 0.782 3.218 22 H -0.200 1.200 23 H -0.214 1.214 24 H -0.187 1.187 25 C 0.004 3.996 26 C 0.023 3.977 27 N -0.263 5.263 28 H 0.116 0.884 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.104 0.896 32 H 0.083 0.917 33 H 0.063 0.937 34 H 0.109 0.891 35 H 0.188 0.812 36 H 0.163 0.837 37 H 0.117 0.883 38 H 0.109 0.891 39 H 0.066 0.934 40 H 0.122 0.878 41 H 0.071 0.929 42 H 0.079 0.921 43 H 0.069 0.931 44 H 0.061 0.939 45 H 0.095 0.905 46 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -20.772 13.202 -5.023 25.120 hybrid contribution 1.921 -1.075 0.925 2.388 sum -18.851 12.127 -4.099 22.786 Atomic orbital electron populations 1.21919 0.90889 1.03322 1.04142 1.22661 0.95933 0.92877 0.86983 1.22202 1.01036 0.95293 1.03737 1.86276 1.30883 1.63899 1.40023 1.20173 0.85968 0.88726 0.89742 1.21156 0.97211 1.02078 1.00183 1.21511 0.92199 0.93152 0.95782 1.20666 0.97180 1.07078 0.97856 1.18563 0.87299 0.79222 0.80837 1.90777 1.45825 1.65032 1.45260 1.48458 1.18260 1.41993 1.24217 1.22237 0.90847 0.97774 0.91584 1.21904 0.97826 0.94435 1.02245 1.21518 0.94989 0.99480 0.98247 1.18982 0.94242 0.91162 0.93659 0.99497 1.21517 1.00699 1.30183 1.04876 0.91879 1.25890 1.02064 0.96263 0.94765 1.70078 1.33529 1.41930 1.09917 0.85567 0.79589 0.79205 0.77390 1.20030 1.21444 1.18710 1.21864 0.83859 0.92598 1.01326 1.22795 0.88747 0.88417 0.97706 1.67345 1.10271 1.24065 1.24610 0.88408 0.91953 0.91364 0.89608 0.91710 0.93741 0.89058 0.81175 0.83693 0.88291 0.89053 0.93405 0.87827 0.92939 0.92065 0.93130 0.93900 0.90507 0.79934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.56 71.98 0.69 -0.86 16 2 C 0.07 1.12 3.11 30.60 0.10 1.22 16 3 C -0.17 -2.34 9.53 71.98 0.69 -1.66 16 4 O -0.30 -6.28 9.75 -88.03 -0.86 -7.14 16 5 C 0.33 7.74 7.46 84.83 0.63 8.37 16 6 C -0.19 -4.20 10.02 22.43 0.22 -3.98 16 7 C 0.00 -0.02 9.88 22.70 0.22 0.20 16 8 C -0.22 -6.88 5.02 -20.00 -0.10 -6.98 16 9 C 0.55 22.77 7.25 86.72 0.63 23.40 16 10 O -0.59 -30.42 16.48 -3.95 -0.07 -30.49 16 11 N -0.60 -23.80 2.97 -821.72 -2.44 -26.23 16 12 C 0.10 2.75 5.38 86.36 0.46 3.22 16 13 C -0.13 -3.71 6.08 30.67 0.19 -3.53 16 14 C -0.10 -3.96 5.10 30.62 0.16 -3.80 16 15 C 0.04 1.94 2.26 -11.32 -0.03 1.91 16 16 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 17 C -0.53 -29.16 8.56 25.60 0.22 -28.95 16 18 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 19 C 0.01 0.54 5.30 84.66 0.45 0.98 16 20 N -0.92 -55.59 11.41 21.45 0.24 -55.34 16 21 Si 0.96 44.14 29.54 68.60 2.03 46.17 16 22 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 23 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 24 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 25 C 0.13 6.20 5.42 86.51 0.47 6.67 16 26 C 0.18 4.51 8.54 85.03 0.73 5.24 16 27 N -0.54 -12.76 8.61 -307.81 -2.65 -15.41 16 28 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.09 1.47 6.96 -2.39 -0.02 1.46 16 32 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 35 H 0.17 2.92 8.06 -2.91 -0.02 2.90 16 36 H 0.15 4.03 8.06 -2.91 -0.02 4.01 16 37 H 0.10 2.35 4.55 -2.39 -0.01 2.34 16 38 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.10 2.23 8.14 -2.39 -0.02 2.22 16 41 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 42 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 44 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 45 H 0.08 4.57 5.17 -2.39 -0.01 4.56 16 46 H 0.18 3.81 7.05 -2.91 -0.02 3.79 16 Total: -1.00 -72.47 370.29 2.95 -69.51 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: 0.97 Total: 17.48 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: 5.72 Total: 1.45 kcal Atomic # 7 Polarization: -92.14 SS G_CDS: -4.84 Total: -96.98 kcal Atomic # 8 Polarization: -36.70 SS G_CDS: -0.92 Total: -37.63 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -72.47 2.95 -69.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597912460.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.433 kcal (2) G-P(sol) polarization free energy of solvation -72.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds