Wall clock time and date at job start Tue Mar 31 2020 14:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47331 * 2 1 4 4 O 1.42902 * 109.47290 * 119.99587 * 2 1 3 5 5 C 1.35711 * 117.00554 * 157.75601 * 4 2 1 6 6 C 1.38997 * 119.90821 * 357.99040 * 5 4 2 7 7 C 1.37704 * 120.09103 * 180.02562 * 6 5 4 8 8 C 1.39734 * 119.90661 * 359.97438 * 7 6 5 9 9 C 1.47600 * 120.08603 * 179.97438 * 8 7 6 10 10 O 1.21583 * 119.99807 * 46.35746 * 9 8 7 11 11 N 1.34771 * 120.00168 * 226.35741 * 9 8 7 12 12 C 1.46966 * 120.59367 * 355.44512 * 11 9 8 13 13 C 1.53814 * 108.40000 * 124.75819 * 12 11 9 14 14 N 1.46974 * 108.57556 * 49.63754 * 13 12 11 15 15 C 1.36940 * 120.58886 * 124.62734 * 14 13 12 16 16 H 1.08002 * 119.99551 * 213.00448 * 15 14 13 17 17 C 1.38811 * 120.00324 * 33.00967 * 15 14 13 18 18 N 1.31621 * 119.99652 * 9.65723 * 17 15 14 19 19 Si 1.86797 * 119.99911 * 189.66084 * 17 15 14 20 20 H 1.48495 * 109.47339 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46985 * 119.99934 * 19 17 15 22 22 H 1.48501 * 109.47001 * 239.99512 * 19 17 15 23 23 C 1.46959 * 118.81407 * 304.65122 * 14 13 12 24 24 C 1.46962 * 120.59642 * 175.72811 * 11 9 8 25 25 C 1.39737 * 119.82540 * 0.02562 * 8 7 6 26 26 C 1.37704 * 119.91312 * 359.97438 * 25 8 7 27 27 H 1.08997 * 109.47066 * 299.99946 * 1 2 3 28 28 H 1.09001 * 109.47138 * 60.00422 * 1 2 3 29 29 H 1.09007 * 109.46948 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47275 * 239.99311 * 2 1 3 31 31 H 1.08999 * 109.47504 * 59.99451 * 3 2 1 32 32 H 1.09000 * 109.47287 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.46665 * 299.99867 * 3 2 1 34 34 H 1.08004 * 119.95745 * 359.97438 * 6 5 4 35 35 H 1.07999 * 120.04497 * 179.72735 * 7 6 5 36 36 H 1.08998 * 109.61248 * 244.54407 * 12 11 9 37 37 H 1.09004 * 109.60743 * 5.05297 * 12 11 9 38 38 H 1.08996 * 109.73870 * 289.85137 * 13 12 11 39 39 H 1.08994 * 109.67594 * 169.38328 * 13 12 11 40 40 H 0.97002 * 119.99534 * 179.97438 * 18 17 15 41 41 H 1.09005 * 109.61024 * 295.48327 * 23 14 13 42 42 H 1.08998 * 109.75488 * 175.05920 * 23 14 13 43 43 H 1.09005 * 109.61266 * 354.94760 * 24 11 9 44 44 H 1.09006 * 109.61267 * 115.28317 * 24 11 9 45 45 H 1.07998 * 120.03869 * 180.02562 * 25 8 7 46 46 H 1.07998 * 119.95654 * 180.02562 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 3.2669 -1.1739 1.1181 6 6 4.0151 -1.0552 -0.0474 7 6 5.2943 -1.5620 -0.1012 8 6 5.8403 -2.1958 1.0181 9 6 7.2109 -2.7410 0.9646 10 8 8.1132 -2.0726 0.4984 11 7 7.4622 -3.9796 1.4325 12 6 6.4040 -4.7602 2.0888 13 6 6.2741 -6.1094 1.3617 14 7 7.6129 -6.7013 1.2303 15 6 7.8684 -7.9595 1.7066 16 1 8.8442 -8.1991 2.1025 17 6 6.8733 -8.9270 1.6804 18 7 5.7517 -8.6998 1.0302 19 14 7.1261 -10.5511 2.5679 20 1 8.4611 -10.5573 3.2181 21 1 6.0723 -10.7201 3.6005 22 1 7.0454 -11.6667 1.5911 23 6 8.6726 -5.9185 0.5791 24 6 8.8009 -4.5715 1.3012 25 6 5.0849 -2.3131 2.1878 26 6 3.8064 -1.8036 2.2336 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.6767 1.9564 0.8899 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 3.5922 -0.5656 -0.9122 35 1 5.8734 -1.4733 -1.0085 36 1 6.6674 -4.9283 3.1330 37 1 5.4598 -4.2187 2.0297 38 1 5.8439 -5.9545 0.3723 39 1 5.6340 -6.7770 1.9385 40 1 5.0564 -9.3760 1.0116 41 1 8.4132 -5.7499 -0.4661 42 1 9.6182 -6.4573 0.6389 43 1 9.4403 -3.9053 0.7218 44 1 9.2324 -4.7236 2.2906 45 1 5.5036 -2.8019 3.0550 46 1 3.2220 -1.8935 3.1374 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610397165.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:14 Heat of formation + Delta-G solvation = -12.045737 kcal Electronic energy + Delta-G solvation = -26924.256421 eV Core-core repulsion = 23201.388448 eV Total energy + Delta-G solvation = -3722.867973 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.64293 -39.60887 -37.44379 -36.65188 -33.89407 -33.50916 -31.71810 -30.97626 -30.32775 -29.60925 -27.63322 -26.90150 -24.30959 -23.58419 -23.16043 -22.37685 -21.22913 -20.41696 -19.02561 -18.35944 -17.39759 -16.26826 -16.11354 -15.76339 -15.63180 -14.88172 -14.81442 -14.63397 -14.27276 -14.05265 -13.67083 -13.56746 -13.47096 -13.26365 -13.17073 -12.97624 -12.69605 -12.58587 -12.32093 -12.25672 -12.03002 -11.58499 -11.46599 -11.28088 -10.94595 -10.85904 -10.75132 -10.68930 -10.48236 -10.21997 -10.07099 -9.85014 -9.44839 -9.00998 -8.59859 -8.32011 -8.13565 -6.64240 -5.85559 -3.37071 1.08394 1.29387 2.94513 3.01131 3.32333 3.39983 3.41390 3.43842 3.82376 4.41291 4.42855 4.54467 4.65316 4.76800 4.78728 4.85304 5.13010 5.17865 5.22291 5.32294 5.35584 5.36550 5.38879 5.46832 5.58065 5.73870 5.80763 5.81935 5.88265 5.92256 5.94273 6.09575 6.13737 6.19844 6.26057 6.36386 6.42170 6.45599 6.59493 6.80137 6.94283 7.23870 7.26724 7.50793 7.71867 7.91613 8.39376 8.54900 9.13107 9.73148 10.32781 11.21549 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.016907 B = 0.003151 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.738061 B = 8883.001867 C =10055.736925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.074 3.926 3 C -0.181 4.181 4 O -0.308 6.308 5 C 0.148 3.852 6 C -0.218 4.218 7 C -0.027 4.027 8 C -0.156 4.156 9 C 0.556 3.444 10 O -0.558 6.558 11 N -0.588 5.588 12 C 0.065 3.935 13 C 0.160 3.840 14 N -0.592 5.592 15 C -0.255 4.255 16 H 0.066 0.934 17 C 0.006 3.994 18 N -0.903 5.903 19 Si 0.906 3.094 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.289 1.289 23 C 0.132 3.868 24 C 0.096 3.904 25 C -0.048 4.048 26 C -0.159 4.159 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.133 0.867 35 H 0.131 0.869 36 H 0.065 0.935 37 H 0.085 0.915 38 H 0.023 0.977 39 H 0.100 0.900 40 H 0.255 0.745 41 H 0.023 0.977 42 H 0.067 0.933 43 H 0.082 0.918 44 H 0.063 0.937 45 H 0.140 0.860 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.848 17.301 -0.430 19.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.018 3.982 3 C -0.239 4.239 4 O -0.222 6.222 5 C 0.102 3.898 6 C -0.237 4.237 7 C -0.046 4.046 8 C -0.160 4.160 9 C 0.345 3.655 10 O -0.438 6.438 11 N -0.319 5.319 12 C -0.059 4.059 13 C 0.033 3.967 14 N -0.314 5.314 15 C -0.385 4.385 16 H 0.084 0.916 17 C -0.193 4.193 18 N -0.547 5.547 19 Si 0.736 3.264 20 H -0.202 1.202 21 H -0.215 1.215 22 H -0.216 1.216 23 C 0.005 3.995 24 C -0.028 4.028 25 C -0.066 4.066 26 C -0.178 4.178 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.151 0.849 35 H 0.149 0.851 36 H 0.083 0.917 37 H 0.103 0.897 38 H 0.042 0.958 39 H 0.118 0.882 40 H 0.065 0.935 41 H 0.041 0.959 42 H 0.085 0.915 43 H 0.100 0.900 44 H 0.081 0.919 45 H 0.157 0.843 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -8.645 17.480 -0.534 19.508 hybrid contribution 0.039 -0.926 0.181 0.944 sum -8.606 16.554 -0.353 18.661 Atomic orbital electron populations 1.21844 0.92303 1.03357 1.03015 1.22480 0.95515 0.92593 0.87632 1.22390 1.02416 0.95915 1.03132 1.86087 1.27271 1.69167 1.39701 1.19161 0.83905 0.92709 0.93985 1.21159 0.96216 1.08160 0.98148 1.20895 0.93779 0.92541 0.97428 1.19822 0.95426 1.04743 0.95960 1.18242 0.87831 0.81387 0.78087 1.90724 1.46264 1.58993 1.47816 1.47986 1.12670 1.14355 1.56932 1.23203 0.89837 0.95716 0.97158 1.21255 0.88279 0.89437 0.97680 1.43952 1.06442 1.14416 1.66640 1.19229 0.98851 0.86494 1.33939 0.91628 1.25237 0.97671 0.97700 0.98691 1.69958 1.07231 1.34434 1.43117 0.86167 0.77695 0.83585 0.78980 1.20182 1.21494 1.21587 1.21305 0.93749 0.90251 0.94220 1.22238 0.82941 0.96403 1.01223 1.21214 0.92726 0.95177 0.97486 1.20328 0.96164 1.03353 0.97910 0.91466 0.90495 0.91460 0.90609 0.91421 0.91641 0.90979 0.84925 0.85126 0.91693 0.89738 0.95848 0.88197 0.93501 0.95907 0.91471 0.90006 0.91873 0.84274 0.84655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.56 37.16 0.36 -0.61 16 2 C 0.07 0.61 2.87 -26.73 -0.08 0.53 16 3 C -0.18 -1.29 9.20 37.16 0.34 -0.95 16 4 O -0.31 -3.49 9.80 -18.84 -0.18 -3.67 16 5 C 0.15 1.83 6.55 -39.02 -0.26 1.58 16 6 C -0.22 -2.63 8.22 -39.50 -0.32 -2.95 16 7 C -0.03 -0.39 9.69 -39.22 -0.38 -0.77 16 8 C -0.16 -2.46 5.19 -104.96 -0.55 -3.01 16 9 C 0.56 10.35 7.27 -12.44 -0.09 10.26 16 10 O -0.56 -11.75 16.42 5.29 0.09 -11.66 16 11 N -0.59 -11.05 2.94 -173.41 -0.51 -11.56 16 12 C 0.06 1.19 5.46 -3.36 -0.02 1.17 16 13 C 0.16 3.68 5.47 -3.36 -0.02 3.66 16 14 N -0.59 -14.51 2.95 -171.76 -0.51 -15.02 16 15 C -0.26 -6.79 9.57 -15.06 -0.14 -6.93 16 16 H 0.07 1.72 7.85 -52.49 -0.41 1.30 16 17 C 0.01 0.16 5.06 -17.43 -0.09 0.07 16 18 N -0.90 -25.39 11.08 55.49 0.61 -24.77 16 19 Si 0.91 21.08 29.56 -169.99 -5.03 16.05 16 20 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 C 0.13 2.79 6.67 -3.60 -0.02 2.77 16 24 C 0.10 1.80 6.58 -3.60 -0.02 1.78 16 25 C -0.05 -0.65 7.30 -39.22 -0.29 -0.93 16 26 C -0.16 -1.98 9.97 -39.50 -0.39 -2.37 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.47 8.14 -51.92 -0.42 0.04 16 30 H 0.08 0.60 6.10 -51.93 -0.32 0.28 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.53 7.12 -51.93 -0.37 0.16 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.13 1.27 5.58 -52.48 -0.29 0.98 16 35 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 36 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 37 H 0.08 1.38 4.12 -51.93 -0.21 1.16 16 38 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.10 2.52 6.10 -51.93 -0.32 2.21 16 40 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 41 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.07 1.35 7.94 -51.93 -0.41 0.94 16 43 H 0.08 1.50 7.01 -51.93 -0.36 1.14 16 44 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.14 1.74 6.58 -52.49 -0.35 1.40 16 46 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 364.81 15.07 5.50 5.50 Total: -1.00 -31.43 364.81 -8.83 -40.26 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -6.83 Total: 1.59 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: -1.97 Total: 3.30 kcal Atomic # 7 Polarization: -50.95 SS G_CDS: -0.40 Total: -51.35 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: -0.10 Total: -15.33 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.05 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.43 -8.83 -40.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610397165.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.210 kcal (2) G-P(sol) polarization free energy of solvation -31.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds