Wall clock time and date at job start Tue Mar 31 2020 14:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47331 * 2 1 4 4 O 1.42902 * 109.47290 * 119.99587 * 2 1 3 5 5 C 1.35711 * 117.00554 * 157.75601 * 4 2 1 6 6 C 1.38997 * 119.90821 * 357.99040 * 5 4 2 7 7 C 1.37704 * 120.09103 * 180.02562 * 6 5 4 8 8 C 1.39734 * 119.90661 * 359.97438 * 7 6 5 9 9 C 1.47600 * 120.08603 * 179.97438 * 8 7 6 10 10 O 1.21583 * 119.99807 * 46.35746 * 9 8 7 11 11 N 1.34771 * 120.00168 * 226.35741 * 9 8 7 12 12 C 1.46966 * 120.59367 * 355.44512 * 11 9 8 13 13 C 1.53814 * 108.40000 * 124.75819 * 12 11 9 14 14 N 1.46974 * 108.57556 * 49.63754 * 13 12 11 15 15 C 1.36940 * 120.58886 * 124.62734 * 14 13 12 16 16 H 1.08002 * 119.99551 * 213.00448 * 15 14 13 17 17 C 1.38811 * 120.00324 * 33.00967 * 15 14 13 18 18 N 1.31621 * 119.99652 * 9.65723 * 17 15 14 19 19 Si 1.86797 * 119.99911 * 189.66084 * 17 15 14 20 20 H 1.48495 * 109.47339 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46985 * 119.99934 * 19 17 15 22 22 H 1.48501 * 109.47001 * 239.99512 * 19 17 15 23 23 C 1.46959 * 118.81407 * 304.65122 * 14 13 12 24 24 C 1.46962 * 120.59642 * 175.72811 * 11 9 8 25 25 C 1.39737 * 119.82540 * 0.02562 * 8 7 6 26 26 C 1.37704 * 119.91312 * 359.97438 * 25 8 7 27 27 H 1.08997 * 109.47066 * 299.99946 * 1 2 3 28 28 H 1.09001 * 109.47138 * 60.00422 * 1 2 3 29 29 H 1.09007 * 109.46948 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47275 * 239.99311 * 2 1 3 31 31 H 1.08999 * 109.47504 * 59.99451 * 3 2 1 32 32 H 1.09000 * 109.47287 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.46665 * 299.99867 * 3 2 1 34 34 H 1.08004 * 119.95745 * 359.97438 * 6 5 4 35 35 H 1.07999 * 120.04497 * 179.72735 * 7 6 5 36 36 H 1.08998 * 109.61248 * 244.54407 * 12 11 9 37 37 H 1.09004 * 109.60743 * 5.05297 * 12 11 9 38 38 H 1.08996 * 109.73870 * 289.85137 * 13 12 11 39 39 H 1.08994 * 109.67594 * 169.38328 * 13 12 11 40 40 H 0.97002 * 119.99534 * 179.97438 * 18 17 15 41 41 H 1.09005 * 109.61024 * 295.48327 * 23 14 13 42 42 H 1.08998 * 109.75488 * 175.05920 * 23 14 13 43 43 H 1.09005 * 109.61266 * 354.94760 * 24 11 9 44 44 H 1.09006 * 109.61267 * 115.28317 * 24 11 9 45 45 H 1.07998 * 120.03869 * 180.02562 * 25 8 7 46 46 H 1.07998 * 119.95654 * 180.02562 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 3.2669 -1.1739 1.1181 6 6 4.0151 -1.0552 -0.0474 7 6 5.2943 -1.5620 -0.1012 8 6 5.8403 -2.1958 1.0181 9 6 7.2109 -2.7410 0.9646 10 8 8.1132 -2.0726 0.4984 11 7 7.4622 -3.9796 1.4325 12 6 6.4040 -4.7602 2.0888 13 6 6.2741 -6.1094 1.3617 14 7 7.6129 -6.7013 1.2303 15 6 7.8684 -7.9595 1.7066 16 1 8.8442 -8.1991 2.1025 17 6 6.8733 -8.9270 1.6804 18 7 5.7517 -8.6998 1.0302 19 14 7.1261 -10.5511 2.5679 20 1 8.4611 -10.5573 3.2181 21 1 6.0723 -10.7201 3.6005 22 1 7.0454 -11.6667 1.5911 23 6 8.6726 -5.9185 0.5791 24 6 8.8009 -4.5715 1.3012 25 6 5.0849 -2.3131 2.1878 26 6 3.8064 -1.8036 2.2336 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.6767 1.9564 0.8899 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 3.5922 -0.5656 -0.9122 35 1 5.8734 -1.4733 -1.0085 36 1 6.6674 -4.9283 3.1330 37 1 5.4598 -4.2187 2.0297 38 1 5.8439 -5.9545 0.3723 39 1 5.6340 -6.7770 1.9385 40 1 5.0564 -9.3760 1.0116 41 1 8.4132 -5.7499 -0.4661 42 1 9.6182 -6.4573 0.6389 43 1 9.4403 -3.9053 0.7218 44 1 9.2324 -4.7236 2.2906 45 1 5.5036 -2.8019 3.0550 46 1 3.2220 -1.8935 3.1374 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610397165.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:13 Heat of formation + Delta-G solvation = -29.667293 kcal Electronic energy + Delta-G solvation = -26925.020549 eV Core-core repulsion = 23201.388448 eV Total energy + Delta-G solvation = -3723.632101 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.74352 -40.82910 -38.66668 -38.16845 -35.64300 -34.23568 -33.37122 -32.25828 -31.79830 -30.87872 -28.68140 -28.13487 -25.88068 -24.81760 -24.54581 -23.76677 -22.34314 -21.66557 -20.50166 -19.34539 -18.91921 -17.85491 -17.42663 -16.96076 -16.67078 -16.52673 -16.08686 -15.79103 -15.50139 -15.44439 -15.25514 -14.96251 -14.91828 -14.49486 -14.34254 -13.98431 -13.77545 -13.51333 -13.31989 -13.21654 -13.13300 -12.98416 -12.77778 -12.70576 -12.47791 -12.26459 -12.16379 -12.03591 -11.95849 -11.70790 -11.66337 -11.49033 -10.93845 -10.60677 -10.05449 -9.87247 -9.22823 -8.59803 -7.87699 -5.43585 -0.00830 0.28049 1.48169 1.50498 1.60548 1.63195 2.01738 2.16240 2.50411 2.70201 3.28410 3.48958 3.60685 3.70943 3.77999 3.88040 3.99825 4.12217 4.18798 4.23097 4.24734 4.35206 4.36779 4.49757 4.56066 4.62114 4.71117 4.75885 4.80487 4.81899 4.85081 4.89609 4.94656 5.04371 5.12213 5.18135 5.22284 5.25696 5.31611 5.33601 5.53084 5.60253 5.62869 5.65390 6.38528 6.39164 6.42833 7.07780 7.12175 7.77026 8.33341 9.16921 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.016907 B = 0.003151 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.738061 B = 8883.001867 C =10055.736925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.063 3.937 3 C -0.178 4.178 4 O -0.316 6.316 5 C 0.151 3.849 6 C -0.212 4.212 7 C -0.037 4.037 8 C -0.184 4.184 9 C 0.557 3.443 10 O -0.587 6.587 11 N -0.594 5.594 12 C 0.083 3.917 13 C 0.167 3.833 14 N -0.609 5.609 15 C -0.265 4.265 16 H 0.069 0.931 17 C -0.044 4.044 18 N -0.934 5.934 19 Si 0.972 3.028 20 H -0.266 1.266 21 H -0.287 1.287 22 H -0.294 1.294 23 C 0.132 3.868 24 C 0.105 3.895 25 C -0.049 4.049 26 C -0.160 4.160 27 H 0.067 0.933 28 H 0.099 0.901 29 H 0.060 0.940 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.054 0.946 33 H 0.093 0.907 34 H 0.157 0.843 35 H 0.129 0.871 36 H 0.076 0.924 37 H 0.108 0.892 38 H -0.006 1.006 39 H 0.076 0.924 40 H 0.252 0.748 41 H 0.007 0.993 42 H 0.076 0.924 43 H 0.087 0.913 44 H 0.075 0.925 45 H 0.150 0.850 46 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.846 18.427 0.275 20.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.007 3.993 3 C -0.235 4.235 4 O -0.230 6.230 5 C 0.105 3.895 6 C -0.230 4.230 7 C -0.056 4.056 8 C -0.187 4.187 9 C 0.348 3.652 10 O -0.469 6.469 11 N -0.324 5.324 12 C -0.041 4.041 13 C 0.041 3.959 14 N -0.332 5.332 15 C -0.395 4.395 16 H 0.086 0.914 17 C -0.240 4.240 18 N -0.579 5.579 19 Si 0.799 3.201 20 H -0.191 1.191 21 H -0.213 1.213 22 H -0.221 1.221 23 C 0.006 3.994 24 C -0.019 4.019 25 C -0.067 4.067 26 C -0.179 4.179 27 H 0.086 0.914 28 H 0.117 0.883 29 H 0.079 0.921 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.112 0.888 34 H 0.175 0.825 35 H 0.147 0.853 36 H 0.095 0.905 37 H 0.126 0.874 38 H 0.013 0.987 39 H 0.094 0.906 40 H 0.061 0.939 41 H 0.025 0.975 42 H 0.094 0.906 43 H 0.105 0.895 44 H 0.093 0.907 45 H 0.167 0.833 46 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -9.638 18.630 0.176 20.976 hybrid contribution 0.271 -1.187 -0.122 1.224 sum -9.368 17.442 0.055 19.799 Atomic orbital electron populations 1.21876 0.90896 1.03335 1.04169 1.22818 0.96653 0.93017 0.86773 1.22377 1.01698 0.95267 1.04191 1.86100 1.26468 1.69108 1.41341 1.19320 0.84370 0.91932 0.93902 1.21351 0.95250 1.07394 0.99029 1.20991 0.94714 0.92792 0.97090 1.19737 0.94427 1.06867 0.97660 1.18673 0.88767 0.80901 0.76876 1.90694 1.47527 1.59684 1.49001 1.48043 1.12572 1.14626 1.57183 1.22993 0.91081 0.93241 0.96742 1.21055 0.87324 0.91284 0.96234 1.44211 1.07387 1.14500 1.67132 1.19533 0.98964 0.87432 1.33592 0.91367 1.25968 0.97524 1.00824 0.99670 1.70118 1.07942 1.35278 1.44576 0.85149 0.77915 0.79381 0.77607 1.19075 1.21350 1.22132 1.21365 0.93228 0.91338 0.93458 1.22083 0.83420 0.94896 1.01511 1.21289 0.93032 0.95362 0.97015 1.20572 0.95786 1.02703 0.98820 0.91427 0.88256 0.92070 0.90089 0.91537 0.92683 0.88817 0.82528 0.85286 0.90532 0.87407 0.98749 0.90596 0.93890 0.97460 0.90574 0.89517 0.90722 0.83290 0.82653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.56 71.98 0.69 -0.85 16 2 C 0.06 0.89 2.87 30.59 0.09 0.98 16 3 C -0.18 -2.10 9.20 71.98 0.66 -1.44 16 4 O -0.32 -6.47 9.80 -90.32 -0.89 -7.36 16 5 C 0.15 3.45 6.55 22.63 0.15 3.60 16 6 C -0.21 -4.76 8.22 22.33 0.18 -4.58 16 7 C -0.04 -1.02 9.69 22.51 0.22 -0.80 16 8 C -0.18 -5.68 5.19 -20.08 -0.10 -5.78 16 9 C 0.56 20.65 7.27 86.72 0.63 21.28 16 10 O -0.59 -24.79 16.42 -3.98 -0.07 -24.85 16 11 N -0.59 -22.08 2.94 -820.83 -2.41 -24.49 16 12 C 0.08 3.00 5.46 86.57 0.47 3.47 16 13 C 0.17 7.85 5.47 86.56 0.47 8.33 16 14 N -0.61 -30.19 2.95 -697.34 -2.06 -32.25 16 15 C -0.27 -14.14 9.57 84.03 0.80 -13.33 16 16 H 0.07 3.54 7.85 -2.91 -0.02 3.51 16 17 C -0.04 -2.38 5.06 84.86 0.43 -1.95 16 18 N -0.93 -53.47 11.08 21.65 0.24 -53.23 16 19 Si 0.97 43.45 29.56 68.60 2.03 45.48 16 20 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 21 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 22 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 23 C 0.13 5.66 6.67 86.42 0.58 6.23 16 24 C 0.10 3.90 6.58 86.42 0.57 4.47 16 25 C -0.05 -1.26 7.30 22.51 0.16 -1.09 16 26 C -0.16 -3.68 9.97 22.32 0.22 -3.45 16 27 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.08 1.06 6.10 -2.39 -0.01 1.05 16 31 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.05 0.77 7.12 -2.39 -0.02 0.76 16 33 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.16 2.65 5.58 -2.91 -0.02 2.64 16 35 H 0.13 3.51 8.06 -2.91 -0.02 3.49 16 36 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 37 H 0.11 3.41 4.12 -2.38 -0.01 3.40 16 38 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 39 H 0.08 3.93 6.10 -2.39 -0.01 3.92 16 40 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 41 H 0.01 0.34 8.14 -2.38 -0.02 0.32 16 42 H 0.08 3.06 7.94 -2.39 -0.02 3.04 16 43 H 0.09 3.16 7.01 -2.38 -0.02 3.14 16 44 H 0.07 2.62 8.14 -2.38 -0.02 2.60 16 45 H 0.15 3.47 6.58 -2.91 -0.02 3.45 16 46 H 0.16 2.89 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -67.83 364.81 4.05 -63.78 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: 0.98 Total: 17.86 kcal Atomic # 6 Polarization: 8.84 SS G_CDS: 6.23 Total: 15.06 kcal Atomic # 7 Polarization: -105.74 SS G_CDS: -4.23 Total: -109.97 kcal Atomic # 8 Polarization: -31.26 SS G_CDS: -0.95 Total: -32.21 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -67.83 4.05 -63.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610397165.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.112 kcal (2) G-P(sol) polarization free energy of solvation -67.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds