Wall clock time and date at job start Tue Mar 31 2020 14:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.47301 * 2 1 4 4 O 1.42904 * 109.47043 * 119.99800 * 2 1 3 5 5 C 1.35922 * 116.99880 * 83.64050 * 4 2 1 6 6 C 1.38858 * 120.40368 * 184.10284 * 5 4 2 7 7 N 1.31876 * 120.99692 * 180.02562 * 6 5 4 8 8 C 1.31681 * 121.94251 * 359.76139 * 7 6 5 9 9 C 1.39519 * 120.69079 * 0.50067 * 8 7 6 10 10 C 1.47861 * 120.53196 * 179.76871 * 9 8 7 11 11 O 1.21548 * 119.99840 * 326.84708 * 10 9 8 12 12 N 1.34780 * 120.00025 * 146.84520 * 10 9 8 13 13 C 1.46920 * 120.62795 * 174.54061 * 12 10 9 14 14 C 1.53191 * 108.89157 * 126.34564 * 13 12 10 15 15 C 1.53353 * 109.15094 * 54.57489 * 14 13 12 16 16 C 1.50707 * 109.40379 * 178.68440 * 15 14 13 17 17 H 1.07993 * 119.99635 * 120.12417 * 16 15 14 18 18 C 1.37875 * 119.99886 * 300.11827 * 16 15 14 19 19 N 1.31517 * 120.00175 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99849 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47567 * 89.99781 * 20 18 16 22 22 H 1.48501 * 109.47035 * 209.99934 * 20 18 16 23 23 H 1.48499 * 109.46741 * 329.99786 * 20 18 16 24 24 C 1.53041 * 109.60473 * 298.71124 * 15 14 13 25 25 C 1.46929 * 120.62853 * 354.56569 * 12 10 9 26 26 C 1.38843 * 120.40621 * 4.12239 * 5 4 2 27 27 H 1.08992 * 109.47040 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46850 * 300.00597 * 1 2 3 29 29 H 1.09005 * 109.46677 * 59.99612 * 1 2 3 30 30 H 1.08994 * 109.47107 * 239.99692 * 2 1 3 31 31 H 1.08998 * 109.46787 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.46711 * 299.99726 * 3 2 1 33 33 H 1.08999 * 109.46839 * 59.99929 * 3 2 1 34 34 H 1.08003 * 119.49965 * 0.02562 * 6 5 4 35 35 H 1.08010 * 119.65431 * 180.27136 * 8 7 6 36 36 H 1.09000 * 109.58659 * 246.19985 * 13 12 10 37 37 H 1.08998 * 109.58948 * 6.48246 * 13 12 10 38 38 H 1.09006 * 109.50081 * 174.65568 * 14 13 12 39 39 H 1.09007 * 109.49807 * 294.75188 * 14 13 12 40 40 H 1.08994 * 109.42835 * 58.76056 * 15 14 13 41 41 H 0.96997 * 120.00065 * 179.97438 * 19 18 16 42 42 H 1.08996 * 109.49947 * 301.42077 * 24 15 14 43 43 H 1.09003 * 109.49230 * 181.32656 * 24 15 14 44 44 H 1.08994 * 109.58857 * 353.36898 * 25 12 10 45 45 H 1.08993 * 109.58711 * 113.65840 * 25 12 10 46 46 H 1.07997 * 120.87776 * 359.95819 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.0856 -2.0292 1.1076 6 6 2.4576 -2.7610 2.2275 7 7 2.5387 -4.0765 2.1830 8 6 2.2691 -4.7545 1.0868 9 6 1.8932 -4.0952 -0.0839 10 6 1.5962 -4.8596 -1.3142 11 8 2.1981 -5.8889 -1.5504 12 7 0.6580 -4.4152 -2.1738 13 6 0.4348 -5.0966 -3.4561 14 6 -1.0500 -5.4543 -3.5758 15 6 -1.8903 -4.1866 -3.3796 16 6 -3.3510 -4.5262 -3.5283 17 1 -4.0320 -4.3520 -2.7084 18 6 -3.8179 -5.0591 -4.7110 19 7 -2.9887 -5.2707 -5.7096 20 14 -5.6287 -5.4794 -4.8956 21 1 -6.3588 -4.3006 -5.4270 22 1 -5.7790 -6.6196 -5.8351 23 1 -6.1877 -5.8522 -3.5713 24 6 -1.6393 -3.6154 -1.9821 25 6 -0.1604 -3.2397 -1.8464 26 6 1.7958 -2.6992 -0.0735 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5140 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 3.1301 1.4424 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 2.6840 -2.2450 3.1489 35 1 2.3433 -5.8320 1.0930 36 1 0.7186 -4.4359 -4.2753 37 1 1.0342 -6.0061 -3.4959 38 1 -1.2446 -5.8747 -4.5625 39 1 -1.3109 -6.1854 -2.8105 40 1 -1.6112 -3.4469 -4.1298 41 1 -3.3171 -5.6460 -6.5416 42 1 -1.8949 -4.3637 -1.2319 43 1 -2.2551 -2.7279 -1.8359 44 1 0.0443 -2.9254 -0.8231 45 1 0.0767 -2.4268 -2.5327 46 1 1.5034 -2.1572 -0.9607 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611674348.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:28 Heat of formation + Delta-G solvation = -51.897265 kcal Electronic energy + Delta-G solvation = -27599.632743 eV Core-core repulsion = 23875.036677 eV Total energy + Delta-G solvation = -3724.596065 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.29532 -40.85404 -39.48611 -38.42084 -35.58462 -34.31331 -34.00312 -32.81322 -31.55825 -31.27175 -28.35298 -28.04238 -26.12651 -25.22967 -24.43727 -23.78010 -22.15350 -21.74165 -20.54830 -19.00180 -18.67936 -18.17245 -17.89272 -17.44049 -17.06009 -16.55877 -16.50128 -16.18213 -15.43863 -15.25509 -15.05759 -14.87705 -14.60522 -14.51809 -14.36309 -14.14079 -13.87359 -13.46523 -13.31546 -13.28297 -13.08546 -13.05194 -12.85093 -12.83192 -12.47540 -12.22891 -12.01393 -11.96129 -11.69823 -11.50763 -11.46256 -11.20198 -10.87920 -10.81444 -10.50669 -10.39992 -9.70524 -9.50529 -8.08994 -6.22296 -0.45981 0.04998 1.40375 1.43223 1.51386 1.55939 1.88755 2.01762 2.43095 2.62524 3.13099 3.18309 3.41088 3.51892 3.66798 3.76637 3.89824 3.97120 3.99797 4.15650 4.21288 4.25270 4.35126 4.46206 4.49194 4.65227 4.70960 4.74704 4.75993 4.79968 4.85008 4.86338 4.91463 4.93501 5.10983 5.16942 5.26635 5.29041 5.31680 5.39528 5.46809 5.64383 5.95258 6.07460 6.15071 6.32143 6.36767 6.74665 6.88344 6.94602 7.46066 8.94491 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.014679 B = 0.003772 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.062373 B = 7420.611802 C = 8530.710799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.063 3.937 3 C -0.144 4.144 4 O -0.301 6.301 5 C 0.085 3.915 6 C 0.096 3.904 7 N -0.459 5.459 8 C 0.104 3.896 9 C -0.146 4.146 10 C 0.556 3.444 11 O -0.576 6.576 12 N -0.592 5.592 13 C 0.119 3.881 14 C -0.113 4.113 15 C 0.047 3.953 16 C -0.533 4.533 17 H 0.051 0.949 18 C 0.017 3.983 19 N -0.914 5.914 20 Si 0.947 3.053 21 H -0.274 1.274 22 H -0.287 1.287 23 H -0.273 1.273 24 C -0.116 4.116 25 C 0.095 3.905 26 C -0.140 4.140 27 H 0.052 0.948 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.095 0.905 33 H 0.071 0.929 34 H 0.195 0.805 35 H 0.164 0.836 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.020 0.980 40 H 0.010 0.990 41 H 0.260 0.740 42 H 0.041 0.959 43 H 0.078 0.922 44 H 0.106 0.894 45 H 0.088 0.912 46 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.894 13.915 12.179 20.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.008 3.992 3 C -0.201 4.201 4 O -0.214 6.214 5 C 0.036 3.964 6 C -0.064 4.064 7 N -0.167 5.167 8 C -0.053 4.053 9 C -0.151 4.151 10 C 0.345 3.655 11 O -0.457 6.457 12 N -0.323 5.323 13 C -0.003 4.003 14 C -0.151 4.151 15 C 0.028 3.972 16 C -0.571 4.571 17 H 0.069 0.931 18 C -0.182 4.182 19 N -0.553 5.553 20 Si 0.774 3.226 21 H -0.199 1.199 22 H -0.213 1.213 23 H -0.197 1.197 24 C -0.154 4.154 25 C -0.026 4.026 26 C -0.166 4.166 27 H 0.071 0.929 28 H 0.092 0.908 29 H 0.110 0.890 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.114 0.886 33 H 0.090 0.910 34 H 0.212 0.788 35 H 0.181 0.819 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.039 0.961 40 H 0.028 0.972 41 H 0.070 0.930 42 H 0.060 0.940 43 H 0.096 0.904 44 H 0.123 0.877 45 H 0.106 0.894 46 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 10.475 13.020 12.745 21.016 hybrid contribution -1.506 -0.426 -1.596 2.236 sum 8.969 12.594 11.148 19.061 Atomic orbital electron populations 1.22456 0.94061 1.03043 1.04625 1.22836 0.95119 0.94771 0.86523 1.21868 1.02123 0.91824 1.04323 1.86184 1.80508 1.13938 1.40767 1.20008 0.97207 0.84743 0.94393 1.22913 0.96823 0.88614 0.98018 1.67858 1.13447 1.08270 1.27159 1.22806 0.94605 1.01067 0.86796 1.20656 1.04783 0.94346 0.95347 1.18479 0.79645 0.84258 0.83155 1.90735 1.52922 1.25453 1.76592 1.48158 1.34897 1.30669 1.18595 1.21668 0.97734 0.97232 0.83651 1.21847 0.92016 0.99633 1.01646 1.18660 0.93648 0.92733 0.92130 1.21558 0.94831 1.41802 0.98899 0.93057 1.25651 1.01164 0.95598 0.95817 1.69959 1.35640 1.45355 1.04363 0.85720 0.81294 0.77817 0.77801 1.19949 1.21287 1.19731 1.21885 0.94499 1.00717 0.98332 1.22558 0.90731 0.86946 1.02384 1.22294 1.01215 0.93409 0.99714 0.92856 0.90838 0.88985 0.90601 0.91575 0.88608 0.90993 0.78796 0.81852 0.90964 0.91024 0.90582 0.96131 0.97180 0.93029 0.94013 0.90377 0.87666 0.89399 0.81567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.44 9.31 71.98 0.67 -1.77 16 2 C 0.06 0.85 2.87 30.60 0.09 0.94 16 3 C -0.14 -1.39 9.56 71.98 0.69 -0.70 16 4 O -0.30 -5.20 9.82 -92.67 -0.91 -6.11 16 5 C 0.08 1.70 6.56 22.56 0.15 1.85 16 6 C 0.10 1.93 11.13 84.83 0.94 2.87 16 7 N -0.46 -11.41 10.34 -194.39 -2.01 -13.42 16 8 C 0.10 2.86 10.77 85.02 0.92 3.78 16 9 C -0.15 -4.12 5.38 -20.01 -0.11 -4.22 16 10 C 0.56 19.37 7.43 86.79 0.64 20.01 16 11 O -0.58 -23.83 16.22 -3.87 -0.06 -23.89 16 12 N -0.59 -20.34 2.97 -822.32 -2.44 -22.78 16 13 C 0.12 4.65 6.43 86.36 0.56 5.20 16 14 C -0.11 -5.21 5.17 30.78 0.16 -5.05 16 15 C 0.05 2.16 2.07 -11.41 -0.02 2.13 16 16 C -0.53 -27.89 8.56 25.60 0.22 -27.67 16 17 H 0.05 2.65 7.74 -2.91 -0.02 2.63 16 18 C 0.02 0.89 5.30 84.65 0.45 1.33 16 19 N -0.91 -50.61 11.31 21.45 0.24 -50.36 16 20 Si 0.95 42.40 29.54 68.60 2.03 44.42 16 21 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 22 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 23 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 24 C -0.12 -4.21 5.30 30.67 0.16 -4.05 16 25 C 0.10 2.74 4.78 86.36 0.41 3.15 16 26 C -0.14 -3.14 5.87 22.83 0.13 -3.00 16 27 H 0.05 0.84 6.44 -2.39 -0.02 0.82 16 28 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 29 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 30 H 0.08 1.01 5.97 -2.39 -0.01 0.99 16 31 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.20 2.70 8.06 -2.91 -0.02 2.68 16 35 H 0.16 4.48 7.98 -2.91 -0.02 4.45 16 36 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 37 H 0.07 2.89 6.99 -2.39 -0.02 2.88 16 38 H 0.08 3.97 6.05 -2.38 -0.01 3.96 16 39 H 0.02 0.98 8.14 -2.38 -0.02 0.96 16 40 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 41 H 0.26 13.86 8.31 -92.71 -0.77 13.09 16 42 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 44 H 0.11 2.56 3.21 -2.39 -0.01 2.55 16 45 H 0.09 2.18 8.05 -2.39 -0.02 2.16 16 46 H 0.17 3.26 3.68 -2.91 -0.01 3.25 16 Total: -1.00 -64.34 361.90 3.89 -60.45 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: 0.99 Total: 16.90 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: 6.06 Total: -5.20 kcal Atomic # 7 Polarization: -82.35 SS G_CDS: -4.21 Total: -86.57 kcal Atomic # 8 Polarization: -29.03 SS G_CDS: -0.97 Total: -30.00 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.42 kcal Total: -64.34 3.89 -60.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611674348.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.551 kcal (2) G-P(sol) polarization free energy of solvation -64.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds